mRNA_L-elsbetiae_contig1871.5472.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1871.5472.1
Unique NamemRNA_L-elsbetiae_contig1871.5472.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1871.5472.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.120e-7
Identity = 64/194 (32.99%), Postives = 79/194 (40.72%), Query Frame = 1 
Query:   10 EASVKHLLQPHNGLASHKQVYANTRSSDGETSLMGCIAHPLRCT---------RVARLLVDAGANTAESKARLTNKEGKVVVNDTVLTLTTRNIRSKKVAGRDAT----------------------AGWRVPPAAVECGHSSCCLLAVAQRRPLDRPESRGRATATLTPITVMLPILKRRARRSRVLVAATFR 498
            EASV+ LL+      S   V+A   SSDG          PL C+         R+ RLLVDAGA+T  S  R+TN  G V  NDT L +TT  +R K V G+ AT                        W  P  A    H+         RRP               P+++ LPILKRRA+   V VA   R
Sbjct:   33 EASVQFLLRQRRK-ESEMSVHAYANSSDGSGMT------PLSCSIEWCSSGNPRIVRLLVDAGADTT-STVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRP---------------PLSLTLPILKRRAKTCHVFVATLLR 203
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BLAST of mRNA_L-elsbetiae_contig1871.5472.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.190e-7
Identity = 65/181 (35.91%), Postives = 85/181 (46.96%), Query Frame = 1 
Query:   10 EASVKHLLQPHNGLASH--KQVYANTRSSDGETSLMGCIA-----HPLRCTRVARLLVDAGANTAESKARLTNKEGKVVVNDTVLTLTTRNIRSKKVAGRDATAG--WRVPPAA-----VECGHSSCCLLAVAQ----RRPLDRPESRGRATATLTPITVMLPILKRRARRSRVLVAATFR 498
            EASVK+LLQ H   A H     Y N R  +G T L+  I            RVARLLV+AGA+T  ++ R TN  G V+ + T L LT   ++ KKV G   +    WR+         VE  H+   L   +     RRP +  E      A    +  +LPIL+RRARR  V+  A  R
Sbjct:  243 EASVKYLLQNH---AKHYGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTT-TELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCR 419
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BLAST of mRNA_L-elsbetiae_contig1871.5472.1 vs. uniprot
Match: D8LB36_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB36_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 9.050e-5
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:   16 SVKHLLQPHNGLASHKQVYANTRSSDGETSLMGCIAHPLRCT-RVARLLVDAGANTAESKARLTNKEGKVVVNDTVLTLTTRNIRSKKVAGRD------ATAGWRVPPAAVEC 333
            SV+HLLQ     A+ ++ Y N     G T L+  I     C+ R+ARLLVDAGA+T  S   + + +G  ++  T   +  R IR KKV G++      + A WR P AA  C
Sbjct:  189 SVEHLLQRQKQTAAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARLLVDAGADTT-STVTMADVQGFGLMAYTPKEIAIRRIRRKKVEGKEDIVATSSCAAWR-PSAACCC 299
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1871.5472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSC5_ECTSI1.120e-732.99EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJF9_ECTSI1.190e-735.91EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LB36_ECTSI9.050e-537.17EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1871contigL-elsbetiae_contig1871:11667..12170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1871.5472.1prot_L-elsbetiae_contig1871.5472.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1871 11775..12167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.271241-UTR-L-elsbetiae_contig1871:11666..117741622815779.271241-UTR-L-elsbetiae_contig1871:11666..11774Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1871 11667..11774 +
1691683097.012585-UTR-L-elsbetiae_contig1871:11666..117741691683097.012585-UTR-L-elsbetiae_contig1871:11666..11774Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1871 11667..11774 +
1622815779.293906-UTR-L-elsbetiae_contig1871:12167..121701622815779.293906-UTR-L-elsbetiae_contig1871:12167..12170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1871 12168..12170 +
1691683097.0300105-UTR-L-elsbetiae_contig1871:12167..121701691683097.0300105-UTR-L-elsbetiae_contig1871:12167..12170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1871 12168..12170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.2810073-CDS-L-elsbetiae_contig1871:11774..121671622815779.2810073-CDS-L-elsbetiae_contig1871:11774..12167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1871 11775..12167 +
1691683097.021611-CDS-L-elsbetiae_contig1871:11774..121671691683097.021611-CDS-L-elsbetiae_contig1871:11774..12167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1871 11775..12167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1871.5472.1

>prot_L-elsbetiae_contig1871.5472.1 ID=prot_L-elsbetiae_contig1871.5472.1|Name=mRNA_L-elsbetiae_contig1871.5472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MGCIAHPLRCTRVARLLVDAGANTAESKARLTNKEGKVVVNDTVLTLTTR
NIRSKKVAGRDATAGWRVPPAAVECGHSSCCLLAVAQRRPLDRPESRGRA
TATLTPITVMLPILKRRARRSRVLVAATFR*
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mRNA from alignment at L-elsbetiae_contig1871:11667..12170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1871.5472.1 ID=mRNA_L-elsbetiae_contig1871.5472.1|Name=mRNA_L-elsbetiae_contig1871.5472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig1871:11667..12170+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGACATCGAAGCATCTGTGAAGCACCTCTTGCAGCCGCACAACGGATT
GGCTAGCCATAAACAGGTCTACGCGAACACCCGGAGCAGCGATGGCGAAA
CATCTTTGATGGGTTGTATTGCTCATCCCCTTCGATGTACGAGGGTTGCG
CGGCTCCTTGTTGACGCCGGGGCGAATACAGCAGAGTCGAAAGCTCGACT
CACAAACAAGGAGGGTAAGGTGGTTGTCAACGACACGGTCCTGACTCTCA
CAACCCGTAACATCCGTAGCAAGAAAGTCGCTGGAAGGGATGCCACCGCG
GGCTGGAGGGTTCCGCCGGCTGCTGTTGAGTGTGGACACAGTTCATGCTG
TCTCTTGGCTGTCGCCCAGCGGCGCCCCCTTGACCGCCCGGAGAGCAGAG
GAAGGGCCACGGCGACTCTGACCCCCATAACGGTAATGCTGCCGATCTTG
AAGCGAAGGGCTCGAAGATCCAGGGTGCTGGTGGCTGCGACCTTCAGGTG
AAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1871:11667..12170+

>mRNA_L-elsbetiae_contig1871.5472.1 ID=mRNA_L-elsbetiae_contig1871.5472.1|Name=mRNA_L-elsbetiae_contig1871.5472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig1871:11667..12170+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTGTATTGCTCATCCCCTTCGATGTACGAGGGTTGCGCGGCTCCT
TGTTGACGCCGGGGCGAATACAGCAGAGTCGAAAGCTCGACTCACAAACA
AGGAGGGTAAGGTGGTTGTCAACGACACGGTCCTGACTCTCACAACCCGT
AACATCCGTAGCAAGAAAGTCGCTGGAAGGGATGCCACCGCGGGCTGGAG
GGTTCCGCCGGCTGCTGTTGAGTGTGGACACAGTTCATGCTGTCTCTTGG
CTGTCGCCCAGCGGCGCCCCCTTGACCGCCCGGAGAGCAGAGGAAGGGCC
ACGGCGACTCTGACCCCCATAACGGTAATGCTGCCGATCTTGAAGCGAAG
GGCTCGAAGATCCAGGGTGCTGGTGGCTGCGACCTTCAGGTGAATGGGTT
GTATTGCTCATCCCCTTCGATGTACGAGGGTTGCGCGGCTCCTTGTTGAC
GCCGGGGCGAATACAGCAGAGTCGAAAGCTCGACTCACAAACAAGGAGGG
TAAGGTGGTTGTCAACGACACGGTCCTGACTCTCACAACCCGTAACATCC
GTAGCAAGAAAGTCGCTGGAAGGGATGCCACCGCGGGCTGGAGGGTTCCG
CCGGCTGCTGTTGAGTGTGGACACAGTTCATGCTGTCTCTTGGCTGTCGC
CCAGCGGCGCCCCCTTGACCGCCCGGAGAGCAGAGGAAGGGCCACGGCGA
CTCTGACCCCCATAACGGTAATGCTGCCGATCTTGAAGCGAAGGGCTCGA
AGATCCAGGGTGCTGGTGGCTGCGACCTTCAGGTGA
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