mRNA_L-elsbetiae_contig1869.5466.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1869.5466.1
Unique NamemRNA_L-elsbetiae_contig1869.5466.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 563 bits (1452), Expect = 1.210e-191
Identity = 343/436 (78.67%), Postives = 353/436 (80.96%), Query Frame = 2 
Query:    2 RMDHDGLSASVERLNLGDAPEAGALAAAVASAAVGATSSPASASGFSKAVDDSSSNNQGGSQTPG-TGPAAHDKDNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSNRPAETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSGRTPRGEFAGGSSPALGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGNAAGSYGQQPAYGYPAAGYGYNAQLYSAPTAYGYAGRGAGAAYSAEGGTTAGSFPVTLPPQAAYGLQAQDGQAPYTQAEYAAALRNQQQAQAQXXXXXXXXXXXXTRTAGEGSYGSQPY 1306
            RMD +GL   VERLNLGDAPEAGALAAAVASAAVGATSSPASASGFSKAV++SSSN QGG Q PG  G  AHDKDNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFED+ VLD+ILSQEHKIDGKVVDVKRAVPKSEAPGPSSRS+RPAETNKIFVGGLAPTVMMAEFRKYFETFG VVDAVVMFDRQTQRSRGFGFVTFQED+VVH+IMMGTHEINGKMVEVKRAEPKENRSGR PRGEFAGGSSPALGG                     XXXXXXXXXX           NGNAA SYGQQ                           RGAGAAYSAEGGTTAGSFPVTLPPQAAYGL   DGQA YTQAEYAAA+RNQQQAQAQ XXXXXXXXXXX R   EG+YGSQPY
Sbjct:   70 RMDVNGLGEGVERLNLGDAPEAGALAAAVASAAVGATSSPASASGFSKAVEESSSN-QGGPQAPGIAGSVAHDKDNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGKMVEVKRAEPKENRSGRAPRGEFAGGSSPALGGGVAAPFTGTRGRAQPFGAGGRXXXXXXXXXXSFPYNNGGAPFNGNAAASYGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGAAYSAEGGTTAGSFPVTLPPQAAYGLP--DGQAQYTQAEYAAAMRNQQQAQAQVXXXXXXXXXXXARNPAEGTYGSQPY 502
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A6H5JV91_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV91_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 7.480e-130
Identity = 248/325 (76.31%), Postives = 254/325 (78.15%), Query Frame = 2 
Query:  332 MKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSNRPAETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSGRTPRGEFAGGSSPALGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGNAAGSYGQQPAYGYPAAGYGYNAQLYSAPTAYGYAGRGAGAAYSAEGGTTAGSFPVTLPPQAAYGLQAQDGQAPYTQAEYAAALRNQQQAQAQXXXXXXXXXXXXTRTAGEGSYGSQPY 1306
            MKDKYTGHPRGFGFIKFED+ VLD+ILSQEHKIDGKVVDVKRAVPKSEAPGPSSRS+RPAETNKIFVGGLAPTVMMAEFRKYFETFG VVDAVVMFDRQTQRSRGFGFVTFQED+VVHEIMMGTHEINGKMVEVKRAEPKENRSGR PRGEFAGGSSPALGG                     XXXXXXXXXX           NGNAA SYGQQ                           RGAGAAYSAEGGTTAGSFPVTLPPQAAYGL   DGQA YTQAEYAAA+RNQQQAQAQXXXXXXXXXXXX R   EG+YGSQPY
Sbjct:    1 MKDKYTGHPRGFGFIKFEDVTVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHEIMMGTHEINGKMVEVKRAEPKENRSGRAPRGEFAGGSSPALGGGVAAPFTGTRGRAQPFGAGGRXXXXXXXXXXSFPYNNGGAPFNGNAAASYGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGAAYSAEGGTTAGSFPVTLPPQAAYGLP--DGQAQYTQAEYAAAMRNQQQAQAQXXXXXXXXXXXXXRNPAEGTYGSQPY 323
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 280 bits (716), Expect = 3.680e-84
Identity = 141/193 (73.06%), Postives = 165/193 (85.49%), Query Frame = 2 
Query:  215 DKDNDVEGKLFIG---GISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSNRPAETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSGRTPRG 781
            DKD+DV GKLF+G   GISWQT+EE L +HF K+G LAD+ALMKDKYTG PRGFGFIKFED +VLD +L+Q EH IDG+VVDVKRAVPKSEAPGP+ R+ R A+ NK+FVGGLAP+V  AEFR+YFE FG+V DAVVMFDRQTQRSRGFGFVTFQ++SVV  ++MGTHE+NGKMVEVK AEPKE+R   +P G
Sbjct:    8 DKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGG 199
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 261 bits (667), Expect = 4.730e-79
Identity = 128/169 (75.74%), Postives = 148/169 (87.57%), Query Frame = 2 
Query:  215 DKDNDVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSNRPAETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEING 718
            DKDND+ GK+F+GGISWQT++E L  +F K+G LAD+ALMKDKYTG PRGFGFIKFED AV+D +L+Q EH IDG+ VDVKRAVPKSEAPGPS R+ RPA+TNK+FVGGLAP+V +AEFR YFE FG+V DAVVMFDRQT RSRGFGFVTFQEDSVV  ++MGTHEING
Sbjct:   16 DKDNDILGKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPS-RTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEING 183
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.910e-65
Identity = 119/206 (57.77%), Postives = 150/206 (72.82%), Query Frame = 2 
Query:  236 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSE-APGPSSRSNRPA-----------ETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSGRTPRGEFAGGSSPALGG 817
            GKLFIGG+SW+TTEE LR HFGKYG L D ALMKDK++G PRGFGF+ F D+AVLD +L + H IDG+ V+VKRA+P+ + A GPS   +  A           E+ K+FVGGL P+V   +FR+YFE FG + DAVVMFDR+TQRSRGFGFVTF+E+  V E++  THE++GK+VE+KRAEPKE RSG    G ++GG     GG
Sbjct:  102 GKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVVEIKRAEPKEARSG----GGYSGGYGGRSGG 303
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A484E761_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E761_BRELC)

HSP 1 Score: 228 bits (581), Expect = 8.410e-63
Identity = 113/186 (60.75%), Postives = 138/186 (74.19%), Query Frame = 2 
Query:  236 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSE-APGPSS----RSNRPA----ETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSG 766
            GKLFIGG+SW+TTE+ LR HFGKYG L D ALMKDKYTG PRGFGF+ F D   +D +L + H +DG+ V+VKRA+P+   APGPS     R N  +    E  KIFVGGLAPTV   +FR YFE FG + DAVVM DR TQRSRGFGF+TF+++S V E++  +HEI+GK VE+KRAEPKE R+G
Sbjct:  119 GKLFIGGVSWETTEDTLRQHFGKYGVLTDAALMKDKYTGQPRGFGFVTFADALAIDRVLEETHTLDGRSVEVKRAIPRERTAPGPSDFRGGRGNNSSGGYTEQKKIFVGGLAPTVAEEDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEDESSVVEVISKSHEIHGKTVEIKRAEPKEARAG 304
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL)

HSP 1 Score: 223 bits (569), Expect = 1.120e-62
Identity = 112/192 (58.33%), Postives = 139/192 (72.40%), Query Frame = 2 
Query:  236 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSE-APGPS----SRSNRPA----------ETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSG 766
            GKLFIGG+SW+TTE+ LR HFGKYG L D ALMKDKYTG PRGFGF+ F D + +D +L + H +DG+ V+VKRA+P+   APG S    +RS   +          E+ KIFVGGLAPT+   +FR YFE FG + DAVVM DR TQRSRGFGF+TF+++S V E++   HEI+GK VE+KRAEPKE RSG
Sbjct:  127 GKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTAPGSSEFRGARSGYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKNHEIHGKSVEIKRAEPKEARSG 318
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A3M6VT05_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT05_9STRA)

HSP 1 Score: 226 bits (575), Expect = 6.550e-62
Identity = 112/187 (59.89%), Postives = 136/187 (72.73%), Query Frame = 2 
Query:  236 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSE-APGPSS---------RSNRPAETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSG 766
            GKLFIGG+SW+TTE+ LR HFGKYG L D ALMKDKYTG PRGFGF+ F D + +D +L + H +DG+ V+VKRA+P+   APG S           S    E  KIFVGGLAPTV   +FR YFE FG   DAVVM DR TQRSRGFGF+TF+E+S V E++  +HEI+GK+VE+KRAEPKE+R G
Sbjct:  115 GKLFIGGVSWETTEDTLRQHFGKYGPLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTAPGSSEIRGGGRGGFSSGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKTTDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKSHEIHGKIVEIKRAEPKESRGG 301
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A6A3TQ19_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TQ19_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.420e-61
Identity = 119/218 (54.59%), Postives = 142/218 (65.14%), Query Frame = 2 
Query:  236 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSE-APGPSSRSNRP-----------------------AETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRSGRTPRGEFAGGSSPALGG 817
            GKLFIGG+SW+TTEE L  HFGKYG L D ALMKDKYTG PRGFGF+ FED   +D +L + H +DG+ V+VKRA+P+ + APG  S   R                         E  KIFVGGLAPTV   +FR+YFE FG + DAVVM DR TQRSRGFGF+TF+E+S V E++  +HEI+GK VE+KRAEPKE RSG        GGS    GG
Sbjct:  124 GKLFIGGVSWETTEETLTQHFGKYGVLTDAALMKDKYTGQPRGFGFVTFEDATAIDRVLEETHMLDGRSVEVKRAIPREKTAPGGGSSDFRGXXXXXXXXXXXXXXXXXXXXXXFTEQKKIFVGGLAPTVAERDFRQYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVLSKSHEIHGKTVEIKRAEPKEARSGGXXXXGSYGGSRGRGGG 341
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BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Match: A0A225W0H2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W0H2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.680e-61
Identity = 112/188 (59.57%), Postives = 137/188 (72.87%), Query Frame = 2 
Query:  236 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVKRAVPKSE-APGPSS-RSNRPA----------ETNKIFVGGLAPTVMMAEFRKYFETFGSVVDAVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKENRS 763
            GKLFIGG+SW+TTE+ LR HFGKYG+L D ALMKDKYTG PRGFGF+ F D + +D +L + H +DG+ V+VKRA+P+   APG S  RS R            E  KIFVGGLAPTV   +FR YFE FG + DAVVM DR TQRSRGFGF+TF+E+S V E++   H+I+GK VE+KRAEPKE R+
Sbjct:  104 GKLFIGGVSWETTEDTLRQHFGKYGSLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLDEAHTLDGRSVEVKRAIPRERTAPGSSDFRSGRSGFGFGGGGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKNHDIHGKSVEIKRAEPKEARA 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1869.5466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW71_ECTSI1.210e-19178.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV91_9PHAE7.480e-13076.31RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZAL5_9STRA3.680e-8473.06Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CMD2_9STRA4.730e-7975.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0WG76_9STRA1.910e-6557.77Uncharacterized protein AlNc14C88G5606 n=1 Tax=Alb... [more]
A0A484E761_BRELC8.410e-6360.75Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AWA8_PLAHL1.120e-6258.33Heterogeneous nuclear ribonucleoprotein 1-like iso... [more]
A0A3M6VT05_9STRA6.550e-6259.89Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6A3TQ19_9STRA1.420e-6154.59Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A225W0H2_9STRA1.680e-6159.57Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1869contigL-elsbetiae_contig1869:9532..13907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score566.6
Seed ortholog evalue9.9e-159
Seed eggNOG ortholog2880.D7FW71
KEGG koko:K14411
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-01_003630.1
Exons4
Model size2340
Cds size1305
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1869.5466.1prot_L-elsbetiae_contig1869.5466.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1869 10563..13903 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.0970676-UTR-L-elsbetiae_contig1869:9531..105621622815778.0970676-UTR-L-elsbetiae_contig1869:9531..10562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1869 9532..10562 -
1691683096.0417728-UTR-L-elsbetiae_contig1869:9531..105621691683096.0417728-UTR-L-elsbetiae_contig1869:9531..10562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1869 9532..10562 -
1622815778.154697-UTR-L-elsbetiae_contig1869:13903..139071622815778.154697-UTR-L-elsbetiae_contig1869:13903..13907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1869 13904..13907 -
1691683096.0873475-UTR-L-elsbetiae_contig1869:13903..139071691683096.0873475-UTR-L-elsbetiae_contig1869:13903..13907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1869 13904..13907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.1118243-CDS-L-elsbetiae_contig1869:10562..113761622815778.1118243-CDS-L-elsbetiae_contig1869:10562..11376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 10563..11376 -
1691683096.0541725-CDS-L-elsbetiae_contig1869:10562..113761691683096.0541725-CDS-L-elsbetiae_contig1869:10562..11376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 10563..11376 -
1622815778.12336-CDS-L-elsbetiae_contig1869:12758..128581622815778.12336-CDS-L-elsbetiae_contig1869:12758..12858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 12759..12858 -
1691683096.0624442-CDS-L-elsbetiae_contig1869:12758..128581691683096.0624442-CDS-L-elsbetiae_contig1869:12758..12858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 12759..12858 -
1622815778.1358485-CDS-L-elsbetiae_contig1869:13201..133081622815778.1358485-CDS-L-elsbetiae_contig1869:13201..13308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 13202..13308 -
1691683096.0707996-CDS-L-elsbetiae_contig1869:13201..133081691683096.0707996-CDS-L-elsbetiae_contig1869:13201..13308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 13202..13308 -
1622815778.1452806-CDS-L-elsbetiae_contig1869:13619..139031622815778.1452806-CDS-L-elsbetiae_contig1869:13619..13903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 13620..13903 -
1691683096.0789776-CDS-L-elsbetiae_contig1869:13619..139031691683096.0789776-CDS-L-elsbetiae_contig1869:13619..13903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1869 13620..13903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1869.5466.1

>prot_L-elsbetiae_contig1869.5466.1 ID=prot_L-elsbetiae_contig1869.5466.1|Name=mRNA_L-elsbetiae_contig1869.5466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=435bp
MDHDGLSASVERLNLGDAPEAGALAAAVASAAVGATSSPASASGFSKAVD
DSSSNNQGGSQTPGTGPAAHDKDNDVEGKLFIGGISWQTTEEGLRHHFGK
YGTLADIALMKDKYTGHPRGFGFIKFEDLAVLDDILSQEHKIDGKVVDVK
RAVPKSEAPGPSSRSNRPAETNKIFVGGLAPTVMMAEFRKYFETFGSVVD
AVVMFDRQTQRSRGFGFVTFQEDSVVHEIMMGTHEINGKMVEVKRAEPKE
NRSGRTPRGEFAGGSSPALGGGGPAQFTGGRGRNQPFGAGGRGAGAGYGG
GGSFPYNNGGAPFNGNAAGSYGQQPAYGYPAAGYGYNAQLYSAPTAYGYA
GRGAGAAYSAEGGTTAGSFPVTLPPQAAYGLQAQDGQAPYTQAEYAAALR
NQQQAQAQVQQQAQAQVQQQTRTAGEGSYGSQPY*
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mRNA from alignment at L-elsbetiae_contig1869:9532..13907-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1869.5466.1 ID=mRNA_L-elsbetiae_contig1869.5466.1|Name=mRNA_L-elsbetiae_contig1869.5466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4376bp|location=Sequence derived from alignment at L-elsbetiae_contig1869:9532..13907- (Laminarionema elsbetiae ELsaHSoW15)
CAGGATGGATCACGACGGGTTGTCAGCAAGTGTGGAGCGATTGAACTTAG
GCGATGCCCCGGAAGCCGGTGCGCTGGCAGCTGCGGTTGCTTCTGCCGCA
GTAGGAGCCACGTCGTCCCCTGCTTCCGCGTCGGGGTTTTCAAAGGCGGT
CGACGACTCTTCCTCGAACAACCAGGGAGGGTCTCAAACGCCTGGTACCG
GCCCCGCTGCCCACGATAAGGACAACGATGTCGAGGGAAAGCTCTTCATC
GGAGGAATATCGTGGCAGACGACAGAGGAGGGCCTCAGGTGTGAAATTGA
AAATTGTTCGTTCTTGCCTTTTCTCTCACGCACGAGCGGTGTGTTTTGAG
CCGTTGCCTTGCGCGGTACGGCCGTCGGGGCCTCGCGCTACCGACTCTCG
TTTTGTGGCGTAGACTTGTGTGTTTTGGGAATGTTTGTATTTGTCTTCTC
TGTTCTATTTTTGTTCGCGCGGCCCTTTATTTGAAAACAGCCGTAGTCTA
TTTTTTATCTCCTGTAATTTTTAATTTTTGAAGATACACATAACCGCCTA
ATTGTGTTCGCTGCTTGCTGTATGGCACCTGCGTATCATGTGTGTGCAGA
CATCATTTTGGGAAGTATGGCACCCTGGCGGACATTGCGCTGATGAAGGA
CAAGTATACGGGACACCCCAGGGGATTCGGCTTCATCAAGTTCGAGGATT
TAGCAGGTAGTCTATGTGTACATATCTTACTTGTATCTAAATATCAATAT
TTACATACTTATCGACCGCGCCTCGCTCGTGTAGGTCAACCTGTTAAATA
GTTGCCGCGTTCCGCAGTTTCGAACGAGTAGACGATCAGAAAAAAAAGGT
GCGTGCCCGTAATTACGTCATGAGAGGCAATGCAGTTATGGTTCAGGCAG
CGGCGTGGCTAAATCTCGCGTAAATGGGTTTCTATAACACCATCTGAAAC
CCCCCGGCTGCTCTGTTCCTTCCTTGGTAGTTTGTATTTATTTTTGTCCC
GTCGGGTCCGGTGCTCTGTCTACTCCTTTTTGTGATGCCCAACAACTAGT
TCTGGACGATATTTTGTCGCAAGAACACAAGATCGACGGCAAGGTGGTGG
ATGTCAAGCGTGCTGTACCCAAGAGCGAGGCACCTGGGCCCTCCTCAAGG
TACGATGCTTTGCTCATGATTCGCCGTTTTTGGGAAAGTTGAAAACAATG
CGACAGTATTATCTAGGTATGTACCTACCTCAGTAAGTAACACAGTGCCT
TTCGTCCAGACGCTCTGTGCGGCGGTTTGGAAAAGATGGAGTCATGCGAC
GCCTCGGTCCTCGCATGAGGCAGCGTGTGATGTGCACGTGCTGTGGCAAC
ATCGAGAGTTCTTGGAGGATCGGCGAGCGCTCCAAAACACGATATTGAAA
TATATTTGTGAATGTAGACTATACGAATGCAGTTGTCCGAAACGCCTCGT
GTCCCCAGATGATCACACTGGACGATGGAGCGGAGTGAATGGTTTAGACC
TAGCCGTTGTTAGCAAATTCACAATTGTGATACACATATATATGTATTAC
AATCCTCGGGTACGAGGCCTGGTAATATTGCAATGTTGGATGGTGTCAAA
AGAACAGTCTCGCCCGCGTCACGACCAAGTCGGTGGTCGCTCTGCGTGAC
CGCTGGCGCGCCTGGGCTGTTCGCCGAAAATCGACACGAGTTTCCTACTA
GGTCTACCTCAGCTAAAAGTGTTTTTGCTGGGGTGCGGCGGCTTTGTCCC
GCACAGCTCGCTTGCGCCCCACGCACGGGGCGAACATGTTGTTGTTGCTG
TTGTCTTCGCATTAAAAACCGCTCTGATCTCTCTATCCAACACCTGACGC
GGACGATTCCCGTGATCCACAGGCTAACTCACCCTAGAAAGGATAAACTG
TAAAAACAAAATGGACCCAAAGGGTTCAGTAAGCAAACACACAAAATGTT
AGACACATATTGTCTGGAGCCCTGCGCTCCCCTCTACATGCTCTATGTGA
GGTAAACATAAAACTGGAAAAGCCAGCATCACCCGGTGAGGTGATTCTAT
CTTGATATGCCGGGGTGTTTCACGCCTGGATTCCCGCCGGTCAGTCAGGC
CAGCCAATTTAGTCCTCGCCACCGACTACACCGCACGCATTGTACAACAA
GAGAGGGAACGGACATCGGACAAGAAACAAACCGGAAGTGCAAACAGACA
CGTAAAAACCCCACACAAAATACGTAACAAACACGTCATCACCTCAAGGT
GCAAGCCTTCCCTATTGAACCCACTGAACCATAGTGAAGGTACAATCTCT
TGAGGCACACACGAGCACACGAACCCTAAGACCGGCTACTATATTCGGTG
CATGCTGTTCTGTATTTTGTTCTTCCACTGCACTTTTTTCGCGGCGGAGA
AGCCGTGGAAACAACAACGATAGATGACCATTTGCAGAGGGAAAAACTGG
TGCTTGATGTTGACTATCATCGGCCCTGACAGTGCTGGTCCACGCTTACG
TTCACTATTCCCCCGATTCCACACTCCCCAGGTCCAACAGGCCAGCAGAG
ACCAACAAGATATTCGTCGGAGGCCTGGCCCCAACCGTCATGATGGCGGA
GTTCAGGAAGTACTTCGAGACGTTCGGTAGCGTAGTGGATGCAGTGGTCA
TGTTCGACAGGCAGACGCAGCGCTCGCGTGGCTTTGGCTTTGTTACTTTC
CAGGAGGACTCGGTTGTCCACGAGATCATGATGGGCACGCACGAGATCAA
CGGCAAGATGGTGGAGGTGAAGCGTGCCGAGCCCAAGGAGAACCGCAGTG
GCCGTACCCCTCGCGGAGAGTTTGCCGGTGGCTCCTCCCCTGCGCTTGGA
GGTGGGGGCCCTGCGCAGTTTACAGGAGGTCGGGGAAGGAACCAACCATT
CGGTGCTGGTGGCCGTGGTGCTGGGGCTGGCTACGGTGGGGGAGGATCGT
TCCCATACAACAACGGCGGCGCCCCCTTTAACGGTAATGCGGCGGGCTCG
TACGGCCAGCAGCCAGCTTACGGATACCCGGCGGCGGGATACGGGTACAA
CGCCCAGCTGTATTCTGCCCCCACTGCCTATGGTTACGCCGGGCGAGGGG
CTGGAGCTGCCTACAGTGCTGAAGGAGGGACAACAGCGGGGTCATTCCCC
GTCACCCTTCCGCCCCAGGCGGCATACGGGCTGCAAGCCCAGGACGGCCA
GGCACCCTACACCCAAGCAGAATATGCTGCTGCCCTGCGAAACCAGCAGC
AGGCCCAGGCTCAAGTGCAGCAACAGGCACAGGCTCAAGTGCAACAGCAG
ACGCGTACTGCGGGTGAAGGATCTTACGGCAGCCAGCCCTACTAAGTTTC
TGAGGGCTGCGCGAGCTCCATGAGCGTGACAGCTATCCAGCCTCAACGCG
GCAGGTTGCGTCGAGGGGCCGGTGATAATTGGGGGGCATTGGGTCCAAGT
GGACTTCGTTTTTTTTCTGTCGAATTGTTTTGAAAGATTGCGACTGAGAG
TGGTTGGCGATGGTACAATACAACGTGTGCCTGGGCGTGTTGGGTTTCAC
TTGTACCAAAGAAAACACGTGTTCGGTGTAGTTTTGCACGATCGATGGTA
GAGTTCGTGAAGTTTGGTAGGTTAACAAGTTGGTGTATGTTGCTGTTCCT
TGACCGAGTGTGATGACGTTTGAAAAGGGTTAGCCAAAGAGCCGAGTAAA
AATGACGTGATTGTATGGCGCGTTGCCAGATTTTTGGATCCGGGTCCCAG
CAAGGCTTTGGATCTGCAGCTTTGTTGGCGCGACTACTGGTTTTTCACCT
TGGTGCAATTTTGTCCATCTGAATGCTGTCGCGCATTTGCTTTCTGAACC
ATGCTACATACGTACGTCGTTGCCATATCCTGTCTGATCTACTTGTATTT
GTCCGCGCGCCCTACGCGTTGCAAAATTTTTCTATGATATGTGTTTTTGT
TTAGACAAGACACAATACTCCCGTATCAACAGTTATGTGATTTTCCAGTC
GTGGTGCGGGCTCGCTTCGATGTCTTGAGGTTTCCTTTGGTGTTGCAGCA
GCCTGGTTTTGCCCCACGCGAAGAATATCGTAGCGCTTTCTCTGGGTGAC
AGTATAGTAAAATAGGTGGTGGGTACGTCGTGGGCTTATTTTGGATACAT
AGACTCGGACGGCTCCGTGTGCCAAGTAAAACATACAGAAGTAGCACCTT
TAACCTGTTTGTAGCAGCAGCGGTAAGTGTAGTTGCATTTACCTACCCTA
TGAAGGCTTTACCCTGCCCAATTAATTATTTTTGGGTTGGAGGAATTTGA
GACATACGCACTCCTGACGTAACGATTTTTTTTTACTACCCACCACCCTT
GGCGTGGGCGTGGGAGTGTCCCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1869:9532..13907-

>mRNA_L-elsbetiae_contig1869.5466.1 ID=mRNA_L-elsbetiae_contig1869.5466.1|Name=mRNA_L-elsbetiae_contig1869.5466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2610bp|location=Sequence derived from alignment at L-elsbetiae_contig1869:9532..13907- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCACGACGGGTTGTCAGCAAGTGTGGAGCGATTGAACTTAGGCGA
TGCCCCGGAAGCCGGTGCGCTGGCAGCTGCGGTTGCTTCTGCCGCAGTAG
GAGCCACGTCGTCCCCTGCTTCCGCGTCGGGGTTTTCAAAGGCGGTCGAC
GACTCTTCCTCGAACAACCAGGGAGGGTCTCAAACGCCTGGTACCGGCCC
CGCTGCCCACGATAAGGACAACGATGTCGAGGGAAAGCTCTTCATCGGAG
GAATATCGTGGCAGACGACAGAGGAGGGCCTCAGATGGATCACGACGGGT
TGTCAGCAAGTGTGGAGCGATTGAACTTAGGCGATGCCCCGGAAGCCGGT
GCGCTGGCAGCTGCGGTTGCTTCTGCCGCAGTAGGAGCCACGTCGTCCCC
TGCTTCCGCGTCGGGGTTTTCAAAGGCGGTCGACGACTCTTCCTCGAACA
ACCAGGGAGGGTCTCAAACGCCTGGTACCGGCCCCGCTGCCCACGATAAG
GACAACGATGTCGAGGGAAAGCTCTTCATCGGAGGAATATCGTGGCAGAC
GACAGAGGAGGGCCTCAGACATCATTTTGGGAAGTATGGCACCCTGGCGG
ACATTGCGCTGATGAAGGACAAGTATACGGGACACCCCAGGGGATTCGGC
TTCATCAAGTTCGAGGATTTAGCAGACATCATTTTGGGAAGTATGGCACC
CTGGCGGACATTGCGCTGATGAAGGACAAGTATACGGGACACCCCAGGGG
ATTCGGCTTCATCAAGTTCGAGGATTTAGCAGTTCTGGACGATATTTTGT
CGCAAGAACACAAGATCGACGGCAAGGTGGTGGATGTCAAGCGTGCTGTA
CCCAAGAGCGAGGCACCTGGGCCCTCCTCAAGTTCTGGACGATATTTTGT
CGCAAGAACACAAGATCGACGGCAAGGTGGTGGATGTCAAGCGTGCTGTA
CCCAAGAGCGAGGCACCTGGGCCCTCCTCAAGGTCCAACAGGCCAGCAGA
GACCAACAAGATATTCGTCGGAGGCCTGGCCCCAACCGTCATGATGGCGG
AGTTCAGGAAGTACTTCGAGACGTTCGGTAGCGTAGTGGATGCAGTGGTC
ATGTTCGACAGGCAGACGCAGCGCTCGCGTGGCTTTGGCTTTGTTACTTT
CCAGGAGGACTCGGTTGTCCACGAGATCATGATGGGCACGCACGAGATCA
ACGGCAAGATGGTGGAGGTGAAGCGTGCCGAGCCCAAGGAGAACCGCAGT
GGCCGTACCCCTCGCGGAGAGTTTGCCGGTGGCTCCTCCCCTGCGCTTGG
AGGTGGGGGCCCTGCGCAGTTTACAGGAGGTCGGGGAAGGAACCAACCAT
TCGGTGCTGGTGGCCGTGGTGCTGGGGCTGGCTACGGTGGGGGAGGATCG
TTCCCATACAACAACGGCGGCGCCCCCTTTAACGGTAATGCGGCGGGCTC
GTACGGCCAGCAGCCAGCTTACGGATACCCGGCGGCGGGATACGGGTACA
ACGCCCAGCTGTATTCTGCCCCCACTGCCTATGGTTACGCCGGGCGAGGG
GCTGGAGCTGCCTACAGTGCTGAAGGAGGGACAACAGCGGGGTCATTCCC
CGTCACCCTTCCGCCCCAGGCGGCATACGGGCTGCAAGCCCAGGACGGCC
AGGCACCCTACACCCAAGCAGAATATGCTGCTGCCCTGCGAAACCAGCAG
CAGGCCCAGGCTCAAGTGCAGCAACAGGCACAGGCTCAAGTGCAACAGCA
GACGCGTACTGCGGGTGAAGGATCTTACGGCAGCCAGCCCTACTAAGTCC
AACAGGCCAGCAGAGACCAACAAGATATTCGTCGGAGGCCTGGCCCCAAC
CGTCATGATGGCGGAGTTCAGGAAGTACTTCGAGACGTTCGGTAGCGTAG
TGGATGCAGTGGTCATGTTCGACAGGCAGACGCAGCGCTCGCGTGGCTTT
GGCTTTGTTACTTTCCAGGAGGACTCGGTTGTCCACGAGATCATGATGGG
CACGCACGAGATCAACGGCAAGATGGTGGAGGTGAAGCGTGCCGAGCCCA
AGGAGAACCGCAGTGGCCGTACCCCTCGCGGAGAGTTTGCCGGTGGCTCC
TCCCCTGCGCTTGGAGGTGGGGGCCCTGCGCAGTTTACAGGAGGTCGGGG
AAGGAACCAACCATTCGGTGCTGGTGGCCGTGGTGCTGGGGCTGGCTACG
GTGGGGGAGGATCGTTCCCATACAACAACGGCGGCGCCCCCTTTAACGGT
AATGCGGCGGGCTCGTACGGCCAGCAGCCAGCTTACGGATACCCGGCGGC
GGGATACGGGTACAACGCCCAGCTGTATTCTGCCCCCACTGCCTATGGTT
ACGCCGGGCGAGGGGCTGGAGCTGCCTACAGTGCTGAAGGAGGGACAACA
GCGGGGTCATTCCCCGTCACCCTTCCGCCCCAGGCGGCATACGGGCTGCA
AGCCCAGGACGGCCAGGCACCCTACACCCAAGCAGAATATGCTGCTGCCC
TGCGAAACCAGCAGCAGGCCCAGGCTCAAGTGCAGCAACAGGCACAGGCT
CAAGTGCAACAGCAGACGCGTACTGCGGGTGAAGGATCTTACGGCAGCCA
GCCCTACTAA
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