mRNA_L-elsbetiae_contig18666.5457.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18666.5457.1
Unique NamemRNA_L-elsbetiae_contig18666.5457.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18666.5457.1 vs. uniprot
Match: D8LU12_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU12_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.020e-12
Identity = 54/139 (38.85%), Postives = 62/139 (44.60%), Query Frame = 1 
Query:    1 SGALAERVREFVRAPAFLSWVHELRRSEA---PSHLCSFPGGXXXXXXXXXGSGGWVD--------EPLAGGPRGAGAAVAXXXXXXXXXXXXXXXXXXXXXXXGDGGQG----RDPLVFLARFKDEVRVPARLGLDDC 372
            SG LAERVREFVR+PAF+SWV+ELRR++A    S+  SF  G             WVD         P+ GG    G A                         GDGG+G    RDP VF ARFKDE     R   D C
Sbjct:  213 SGVLAERVREFVRSPAFMSWVNELRRADAGAAKSYASSFIDGACCSSDE------WVDGVRAGGRDHPVVGGIGDGGGA----------------------GRKGDGGRGGGRERDPFVFFARFKDEAEGNLRWSCDYC 323
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BLAST of mRNA_L-elsbetiae_contig18666.5457.1 vs. uniprot
Match: D8LCP6_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.120e-8
Identity = 51/136 (37.50%), Postives = 57/136 (41.91%), Query Frame = 1 
Query:    1 SGALAERVREFVRAPAFLSWVHELRRSEAPSHLCSFP--------GGXXXXXXXXXGSGGWVDEPLAGGPRGAGAAVAXXXXXXXXXXXXXXXXXXXXXXXGDGGQG----RDPLVFLARFKDEVRVPARLGLDDC 372
            SGAL  R+REFVR PAFLSWV ELRR   P  L S+         GG           GG     + G P+G  + V                        G+GG G    RDPLVF ARFKDE     R   D C
Sbjct: 1081 SGALTCRLREFVRTPAFLSWVQELRR---PGDLDSYGLWRAWSDGGGNERCRLGTVWRGG-----VHGAPKGGASVVGEGREDAAPVACAGRRGE------GEGGGGGTNRRDPLVFCARFKDETAGNLRWSCDSC 1202
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BLAST of mRNA_L-elsbetiae_contig18666.5457.1 vs. uniprot
Match: A0A6H5JGJ4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.450e-7
Identity = 46/132 (34.85%), Postives = 51/132 (38.64%), Query Frame = 1 
Query:    1 SGALAERVREFVRAPAFLSWVHELRRSEAPSHLCSFPGGXXXXXXXXXGSGGWVDEPLAGGP--RGAGAAVAXXXXXXXXXXXXXXXXXXXXXXXGDGGQG------RDPLVFLARFKDEVRVPARLGLDDC 372
            SGAL  R+REF+R PAFLSWV +LRR          PG           S G VDEP  G    RG G                           G+G         RDP VF ARFKDE     R   + C
Sbjct:  918 SGALTCRLREFLRTPAFLSWVQKLRR----------PGDLDCGGLWRAWSDGGVDEPCRGSTVGRGGGNGAPKGGTSVVGEGREGAVPVACAGGRGEGXXXXXXSTRRDPFVFCARFKDETTGNLRWSCNTC 1039
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18666.5457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU12_ECTSI4.020e-1238.85Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCP6_ECTSI2.120e-837.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JGJ4_9PHAE3.450e-734.85Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18666contigL-elsbetiae_contig18666:185..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000680.1
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.2244453-CDS-L-elsbetiae_contig18666:184..5561622815777.2244453-CDS-L-elsbetiae_contig18666:184..556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18666 185..556 -
1691683095.430467-CDS-L-elsbetiae_contig18666:184..5561691683095.430467-CDS-L-elsbetiae_contig18666:184..556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18666 185..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18666.5457.1prot_L-elsbetiae_contig18666.5457.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18666 185..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18666.5457.1

>prot_L-elsbetiae_contig18666.5457.1 ID=prot_L-elsbetiae_contig18666.5457.1|Name=mRNA_L-elsbetiae_contig18666.5457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
SGALAERVREFVRAPAFLSWVHELRRSEAPSHLCSFPGGGDGGGGACCGS
GGWVDEPLAGGPRGAGAAVASAATAVDAVGDIGGGGGGGGRSSGDGGQGR
DPLVFLARFKDEVRVPARLGLDDC
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mRNA from alignment at L-elsbetiae_contig18666:185..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18666.5457.1 ID=mRNA_L-elsbetiae_contig18666.5457.1|Name=mRNA_L-elsbetiae_contig18666.5457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig18666:185..556- (Laminarionema elsbetiae ELsaHSoW15)
TCCGGCGCCTTGGCCGAACGGGTGCGGGAGTTCGTTCGAGCGCCGGCGTT
CTTGTCGTGGGTGCACGAGCTGCGGCGCTCGGAGGCCCCATCGCACTTGT
GTTCCTTCCCCGGCGGCGGAGACGGCGGCGGCGGCGCTTGTTGCGGCTCG
GGCGGGTGGGTCGATGAACCGCTTGCCGGGGGGCCCCGCGGTGCCGGTGC
TGCTGTCGCTTCTGCTGCCACTGCTGTCGACGCTGTTGGGGATATTGGTG
GTGGTGGTGGTGGTGGTGGCCGTAGCAGCGGCGACGGCGGTCAGGGGAGG
GATCCGTTGGTTTTCCTTGCTCGCTTCAAAGACGAGGTGAGAGTGCCAGC
TCGCTTGGGACTGGACGATTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18666:185..556-

>mRNA_L-elsbetiae_contig18666.5457.1 ID=mRNA_L-elsbetiae_contig18666.5457.1|Name=mRNA_L-elsbetiae_contig18666.5457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig18666:185..556- (Laminarionema elsbetiae ELsaHSoW15)
TCCGGCGCCTTGGCCGAACGGGTGCGGGAGTTCGTTCGAGCGCCGGCGTT
CTTGTCGTGGGTGCACGAGCTGCGGCGCTCGGAGGCCCCATCGCACTTGT
GTTCCTTCCCCGGCGGCGGAGACGGCGGCGGCGGCGCTTGTTGCGGCTCG
GGCGGGTGGGTCGATGAACCGCTTGCCGGGGGGCCCCGCGGTGCCGGTGC
TGCTGTCGCTTCTGCTGCCACTGCTGTCGACGCTGTTGGGGATATTGGTG
GTGGTGGTGGTGGTGGTGGCCGTAGCAGCGGCGACGGCGGTCAGGGGAGG
GATCCGTTGGTTTTCCTTGCTCGCTTCAAAGACGAGGTGAGAGTGCCAGC
TCGCTTGGGACTGGACGATTGTTCCGGCGCCTTGGCCGAACGGGTGCGGG
AGTTCGTTCGAGCGCCGGCGTTCTTGTCGTGGGTGCACGAGCTGCGGCGC
TCGGAGGCCCCATCGCACTTGTGTTCCTTCCCCGGCGGCGGAGACGGCGG
CGGCGGCGCTTGTTGCGGCTCGGGCGGGTGGGTCGATGAACCGCTTGCCG
GGGGGCCCCGCGGTGCCGGTGCTGCTGTCGCTTCTGCTGCCACTGCTGTC
GACGCTGTTGGGGATATTGGTGGTGGTGGTGGTGGTGGTGGCCGTAGCAG
CGGCGACGGCGGTCAGGGGAGGGATCCGTTGGTTTTCCTTGCTCGCTTCA
AAGACGAGGTGAGAGTGCCAGCTCGCTTGGGACTGGACGATTGT
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