mRNA_L-elsbetiae_contig1865.5454.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1865.5454.1
Unique NamemRNA_L-elsbetiae_contig1865.5454.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1865.5454.1 vs. uniprot
Match: A0A6H5KVF7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.820e-21
Identity = 56/82 (68.29%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 ALLLGIRFSKDRGDVNTRLRHLHDFASSELDRFSSEKAGAVALLALCGVQMGVQIRLGRPRGVLGTAKRVSALILSVPGLAR 246
            A LL IRFS+DRGDV TRL HLHDFA+SEL RF  E  GAVALLAL G  MGVQIRLGR  G+L TA+  S+LI   PGL R
Sbjct:  380 AQLLTIRFSRDRGDVATRLWHLHDFATSELRRFRQEGKGAVALLALIGPLMGVQIRLGRLDGILATAELASSLIRKCPGLVR 461
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BLAST of mRNA_L-elsbetiae_contig1865.5454.1 vs. uniprot
Match: D8LS51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS51_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.300e-5
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  277 LAVFRLHGLVEEYEALRTLLSKTTGETPPAFQDMQPKKP-LCGLVVCCLHADRLLSM 444
            +AVFRL+G  + Y+ALR LL+KT  +  PAF+DM P     C L +C  H  +LL M
Sbjct:    1 MAVFRLYGRRDAYDALRDLLAKTIQQDTPAFEDMSPSTSRFCDLPMCASHLRKLLKM 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1865.5454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVF7_9PHAE1.820e-2168.29Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LS51_ECTSI5.300e-547.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1865contigL-elsbetiae_contig1865:9530..10964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size697
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.956245-CDS-L-elsbetiae_contig1865:9530..99811622815776.956245-CDS-L-elsbetiae_contig1865:9530..9981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 9531..9981 -
1691683095.270935-CDS-L-elsbetiae_contig1865:9530..99811691683095.270935-CDS-L-elsbetiae_contig1865:9530..9981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 9531..9981 -
1622815776.967648-CDS-L-elsbetiae_contig1865:10719..109641622815776.967648-CDS-L-elsbetiae_contig1865:10719..10964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 10720..10964 -
1691683095.2795997-CDS-L-elsbetiae_contig1865:10719..109641691683095.2795997-CDS-L-elsbetiae_contig1865:10719..10964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 10720..10964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1865.5454.1prot_L-elsbetiae_contig1865.5454.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1865 9531..10964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1865.5454.1

>prot_L-elsbetiae_contig1865.5454.1 ID=prot_L-elsbetiae_contig1865.5454.1|Name=mRNA_L-elsbetiae_contig1865.5454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
ALLLGIRFSKDRGDVNTRLRHLHDFASSELDRFSSEKAGAVALLALCGVQ
MGVQIRLGRPRGVLGTAKRVSALILSVPGLARIYHSHAVHLSLAVFRLHG
LVEEYEALRTLLSKTTGETPPAFQDMQPKKPLCGLVVCCLHADRLLSMEV
LPPPPPPGGTAASPEAPPGVVGTNGACGAPDTAWAAGASSSGEGACATLA
PASTTPAPATDCSSRGGGGGGGGGGVKAAIKR
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mRNA from alignment at L-elsbetiae_contig1865:9530..10964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1865.5454.1 ID=mRNA_L-elsbetiae_contig1865.5454.1|Name=mRNA_L-elsbetiae_contig1865.5454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1435bp|location=Sequence derived from alignment at L-elsbetiae_contig1865:9530..10964- (Laminarionema elsbetiae ELsaHSoW15)
GCGCTGCTGCTTGGCATCCGGTTCTCCAAGGACCGCGGGGACGTGAACAC
GCGGCTGCGGCACCTCCACGACTTCGCCTCGTCTGAGCTCGACCGCTTCA
GCTCGGAGAAGGCCGGGGCGGTGGCGCTTTTGGCGCTGTGCGGAGTCCAG
ATGGGGGTCCAGATAAGGCTCGGGCGGCCCCGCGGCGTCTTGGGTACGGC
CAAGAGGGTGTCCGCCCTGATACTCTCGGTGCCTGGGTTGGCCAGGTGCG
GCGTCGTAAAATATATTTAGATGTACCTATTGTAGATACCTGGCAGGAAG
TAAGTTTTTTTTTCTTGTGTATTTACCCACTTCCTCCGTCTCATAAGTTG
GGTAACTATGGGGGGTAGATCATACCTCGCCGATGGGGCTGCCCACGATG
CTATAAATAGTCAGGTTCGTTGAAGCCGTTTTTTTGTGGCATTTATTTGC
TGATCCTTCGGGCCCGTTTTTATTTTCGTACATACCTATATATACAATAC
CTTTTTGGGGGTGTGTAAGTTGGCCTGTGACCACGGGAAATGACCGCATC
AAGTGTTGGAATAGTACGGGCGTACGGGCACATCGGGAGGTACTGGGTGG
AGAGATCGGAACGGTTTTGAACGTGAAGGCAACAACAACAACAACAACAA
CAACAACAACAACAAAACAATTAATTGCCGATCTCGAAAAAAGAAAAAAG
GTGGAAAGATATTTTCCAACGACCTTGATCACCCTTCCCCATCGTAGAAA
TACCGGGCCGGGCGGTGAAAAACTAGACTAATCGCACCCCATGTGCATTT
TCCCGCACTTCATACATAAATAGTCTACGCACATAAAAAAATAAAAAATA
AAAAATGCTGCTACTGTACAACAGTTCACGGTAAAGCCCCGCAAGACCCG
ATCCCACCAAAAACCGCACCGCTTCTTCTTCGCCCTTGCCGCTCGATCCC
CTCACTCTCTCTCTCTCCCCGCCCCGCGTCCAGGATCTACCACTCCCACG
CCGTCCACCTGTCCCTGGCGGTGTTTCGGCTGCACGGGCTCGTGGAAGAG
TACGAGGCCCTCCGGACCCTCCTGTCCAAGACGACCGGCGAGACACCGCC
GGCCTTCCAGGACATGCAGCCGAAGAAACCGCTCTGCGGCCTGGTCGTGT
GCTGTCTCCACGCCGATCGCCTGCTCTCGATGGAAGTGCTGCCGCCTCCT
CCTCCTCCGGGCGGCACCGCCGCGAGCCCGGAAGCGCCACCGGGCGTCGT
CGGCACGAACGGCGCCTGCGGCGCCCCCGACACGGCTTGGGCGGCCGGTG
CGAGCAGCAGCGGCGAGGGTGCCTGCGCCACTCTAGCCCCAGCCAGCACC
ACGCCAGCGCCGGCAACGGACTGCAGCAGTAGAGGGGGCGGTGGTGGTGG
TGGTGGTGGTGGTGTGAAAGCTGCTATCAAGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1865:9530..10964-

>mRNA_L-elsbetiae_contig1865.5454.1 ID=mRNA_L-elsbetiae_contig1865.5454.1|Name=mRNA_L-elsbetiae_contig1865.5454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig1865:9530..10964- (Laminarionema elsbetiae ELsaHSoW15)
GCGCTGCTGCTTGGCATCCGGTTCTCCAAGGACCGCGGGGACGTGAACAC
GCGGCTGCGGCACCTCCACGACTTCGCCTCGTCTGAGCTCGACCGCTTCA
GCTCGGAGAAGGCCGGGGCGGTGGCGCTTTTGGCGCTGTGCGGAGTCCAG
ATGGGGGTCCAGATAAGGCTCGGGCGGCCCCGCGGCGTCTTGGGTACGGC
CAAGAGGGTGTCCGCCCTGATACTCTCGGTGCCTGGGTTGGCCAGGCGCT
GCTGCTTGGCATCCGGTTCTCCAAGGACCGCGGGGACGTGAACACGCGGC
TGCGGCACCTCCACGACTTCGCCTCGTCTGAGCTCGACCGCTTCAGCTCG
GAGAAGGCCGGGGCGGTGGCGCTTTTGGCGCTGTGCGGAGTCCAGATGGG
GGTCCAGATAAGGCTCGGGCGGCCCCGCGGCGTCTTGGGTACGGCCAAGA
GGGTGTCCGCCCTGATACTCTCGGTGCCTGGGTTGGCCAGGATCTACCAC
TCCCACGCCGTCCACCTGTCCCTGGCGGTGTTTCGGCTGCACGGGCTCGT
GGAAGAGTACGAGGCCCTCCGGACCCTCCTGTCCAAGACGACCGGCGAGA
CACCGCCGGCCTTCCAGGACATGCAGCCGAAGAAACCGCTCTGCGGCCTG
GTCGTGTGCTGTCTCCACGCCGATCGCCTGCTCTCGATGGAAGTGCTGCC
GCCTCCTCCTCCTCCGGGCGGCACCGCCGCGAGCCCGGAAGCGCCACCGG
GCGTCGTCGGCACGAACGGCGCCTGCGGCGCCCCCGACACGGCTTGGGCG
GCCGGTGCGAGCAGCAGCGGCGAGGGTGCCTGCGCCACTCTAGCCCCAGC
CAGCACCACGCCAGCGCCGGCAACGGACTGCAGCAGTAGAGGGGGCGGTG
GTGGTGGTGGTGGTGGTGGTGTGAAAGCTGCTATCAAGAGGGATCTACCA
CTCCCACGCCGTCCACCTGTCCCTGGCGGTGTTTCGGCTGCACGGGCTCG
TGGAAGAGTACGAGGCCCTCCGGACCCTCCTGTCCAAGACGACCGGCGAG
ACACCGCCGGCCTTCCAGGACATGCAGCCGAAGAAACCGCTCTGCGGCCT
GGTCGTGTGCTGTCTCCACGCCGATCGCCTGCTCTCGATGGAAGTGCTGC
CGCCTCCTCCTCCTCCGGGCGGCACCGCCGCGAGCCCGGAAGCGCCACCG
GGCGTCGTCGGCACGAACGGCGCCTGCGGCGCCCCCGACACGGCTTGGGC
GGCCGGTGCGAGCAGCAGCGGCGAGGGTGCCTGCGCCACTCTAGCCCCAG
CCAGCACCACGCCAGCGCCGGCAACGGACTGCAGCAGTAGAGGGGGCGGT
GGTGGTGGTGGTGGTGGTGGTGTGAAAGCTGCTATCAAGAGG
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