mRNA_L-elsbetiae_contig18639.5450.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18639.5450.1
Unique NamemRNA_L-elsbetiae_contig18639.5450.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 9.910e-67
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 1
Query:    7 PQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVFRSQGQTMRNIILDIRPPPGKGMDSAAVYVALSRATSLEALSLL 453
            PQFVLLGVCNNSDGIIR IELDPRE +  + + GYSVV LRYAPLR+F YIK+AD AGLHL+GL RGVIAVAPVE+ FTI G+ KR+FTF+RRQ+PL AGC+SSV+RSQGQTM  IILDIR PPG  +D AAVYVALSRAT L  L+LL
Sbjct:  143 PQFVLLGVCNNSDGIIRGIELDPREGYA-SSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 290          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 6.200e-66
Identity = 114/157 (72.61%), Postives = 128/157 (81.53%), Query Frame = 1
Query:    4 KPQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVFRSQGQTMRNIILDIRPPPGKGMD--SAAVYVALSRATSLEALSL-LPRDF 465
            +PQFVLLGVCNNSDGIIR IELDP EDFLL+P+PGYSVVNLRYAPL+VF YIKTADDAGLHLEGLDRGV+A+APVEK+ TIEG+GK +F F+RRQLPL AGCVSSVFRSQGQTM  IILDI PPPG  M   S + ++     + L   SL LP  F
Sbjct:  621 RPQFVLLGVCNNSDGIIRGIELDPLEDFLLDPTPGYSVVNLRYAPLQVFVYIKTADDAGLHLEGLDRGVVAIAPVEKECTIEGIGKGKFIFKRRQLPLPAGCVSSVFRSQGQTMPKIILDIHPPPGTAMKGGSTSTFICFRFVSRLPRASLALPYAF 777          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 5.410e-63
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 1
Query:    7 PQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVFRSQGQTMRNIILDIRPPPGKGMDSAAVYVALSRATSLEALSLL 453
            PQFVLLGVCNNSDGIIR IELDPRE +  + + GYSVV LRYAPLR+F YIK+AD AGLHL+GL RGVIAVAPVE+ FTI G+ KR+FTF+RRQ+PL AGC+SSV+RSQGQTM  IILDIR PPG  +D AAVYVALSRAT L  L+LL
Sbjct: 1850 PQFVLLGVCNNSDGIIRGIELDPREGYA-SSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 1997          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.230e-52
Identity = 89/115 (77.39%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    4 KPQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVFRSQGQTMR 348
            KPQFVLLGVCNNSDGIIR IELDPREDFLL+P+PGYSVVNLRYAPLRVF YIKTADDAGLHLEGLDRGV+A+APVEK+FTIEG+GKR+F F+RRQLP + G ++ + R   +T++
Sbjct: 2087 KPQFVLLGVCNNSDGIIRGIELDPREDFLLDPTPGYSVVNLRYAPLRVFVYIKTADDAGLHLEGLDRGVVAIAPVEKEFTIEGIGKRKFIFKRRQLPDILGIINYLHRLGKETLK 2201          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.010e-37
Identity = 77/149 (51.68%), Postives = 101/149 (67.79%), Query Frame = 1
Query:    7 PQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVFRSQGQTMRNIILDIRPPPGKGMDSAAVYVALSRATSLEALSLL 453
            PQ VLLGVC+N DGI+RAIELD RE  + N   GY VV+L++ P+RVF +I++ DD+GL L G  RGV+A  P+E++  + G   R FT +RRQLPL +GC+SSV          +ILD+R PPG  +D A++YVA SRA SL    LL
Sbjct: 1337 PQHVLLGVCSNRDGIVRAIELDQREQ-IQNHDGGYRVVHLKHLPVRVFVHIESMDDSGLKLPGFPRGVVAFGPIERNVVLTGKNGRNFTIKRRQLPLTSGCLSSV---------RVILDLRKPPGPRVDPASLYVARSRAKSLNDTYLL 1475          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: A0A6H5L437_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L437_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.580e-36
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    7 PQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVF 324
            PQ VLLGVCNNSDGI+RAIEL  RE  + N + GY VV+L+Y P+RVF +I++ADDAGL L GL RGV+A  PVE++F + G   R+FT +RRQLPL +GC+SSV+
Sbjct:   46 PQHVLLGVCNNSDGIVRAIELYQREQ-VQNHNDGYRVVHLKYPPVRVFVHIESADDAGLKLPGLPRGVVAFGPVERNFVLTGNNGRKFTIKRRQLPLTSGCLSSVY 150          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.030e-28
Identity = 76/164 (46.34%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    4 KPQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVG-KREFTFRRRQLPLVAGCVSSV-------------FRSQGQTMRNIILDIRPPPGKGMDSAAVYVALSRATSLEALSLL 453
            +PQFV+LGVCNNSDGIIR IE+  RE+                    VF YI+TA DAGL L  L RGV +V PVE++F+I     KR+FTF R+Q+PL AGC+S++               S   ++R IILD++ PP   +D A+ Y+ALSRAT LE L LL
Sbjct: 1733 QPQFVILGVCNNSDGIIRGIEITQREE--------------------VFVYIQTAYDAGLKLPDLCRGVTSVGPVERNFSIVITKTKRKFTFSRKQVPLTAGCLSALGSDYIASSCLYHPILSHCVSLRRIILDLQKPPQPLVDPASSYLALSRATYLEDLYLL 1876          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: A0A6H5JCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.790e-27
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    7 PQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCV 312
            PQFVLLGVCNNSDG+I +IELD RE++ ++ +PG+SVV LRY P+R              L+GL RGV+A APVEK F++ GVGKR+FT +RRQL   AG V
Sbjct:   59 PQFVLLGVCNNSDGVIDSIELDQREEYHVHSNPGHSVVYLRYTPVR--------------LDGLPRGVVAFAPVEKPFSVVGVGKRKFTIQRRQLLPTAGSV 146          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.470e-22
Identity = 60/158 (37.97%), Postives = 90/158 (56.96%), Query Frame = 1
Query:   52 IRAIELDPREDFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVFRSQ----------------------------GQTMRNIILDIRPPPGKGMDSAAVYVALSRATSLEA 441
            I +I+LDPRE  +     GY VV+L + P+RV  +I+TA DAGLHL  L+RG +AV    + F + G+  ++++F+R QLPL+ G +SSV+R+Q                            G+T++ ++L +  P    MD +A YVALSRATS E+
Sbjct: 1037 IVSIDLDPREAIVDGEPEGYRVVHLVHPPVRVVIFIQTAYDAGLHLPSLNRGEVAVGVESRSFDVRGLHDKKYSFKRGQLPLLPGHLSSVYRAQHFIHAYMHTSVLPQLVSFCLSSCYLSSKGETIKTLLLHMTKPVDGVMDPSAAYVALSRATSFES 1194          
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Match: UPI001B86C5E2 (uncharacterized protein n=2 Tax=Suillus paluster TaxID=48578 RepID=UPI001B86C5E2)

HSP 1 Score: 95.5 bits (236), Expect = 1.070e-21
Identity = 67/162 (41.36%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   22 LGVCNNSDGIIRAIELDPRE-DFLLNPSPGYSVVNLRYAPLRVFAYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLVAGCVSSVFRSQGQTMRNIILDIRPPPGKGMDSAAVYVALSRATSLEALSLLPRDFGGPQPATKQRHPC 504
            L + N S G I  I LD RE DF    SP  ++V L Y P   +  IK      + LEGL++ +I + P+E+ FT+   G    + RRRQLPL      + +RSQGQT+ N I+DI  PP  G+    VYVALSRA   + + LL RDF      T   HPC
Sbjct:   13 LDIANGSRGEITKIVLDERETDF----SPTAAIVELTYPP--AYVLIKLNRTKAVQLEGLEKNIIPLVPMERTFTVIH-GNHPKSIRRRQLPLTPAYSFTDYRSQGQTINNAIIDIATPPTAGLTPFNVYVALSRARGRDGVRLL-RDFDENLLMT---HPC 163          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18639.5450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2I1_ECTSI9.910e-6774.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXW4_9PHAE6.200e-6672.61ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G3U9_ECTSI5.410e-6374.50ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KIB1_9PHAE1.230e-5277.39ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE1.010e-3751.68ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L437_9PHAE2.580e-3661.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN07_9PHAE1.030e-2846.34ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JCW5_9PHAE2.790e-2756.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT57_9PHAE1.470e-2237.97ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI001B86C5E21.070e-2141.36uncharacterized protein n=2 Tax=Suillus paluster T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18639contigL-elsbetiae_contig18639:487..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue1.4e-55
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size531
Cds size531
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.6544526-CDS-L-elsbetiae_contig18639:486..10171622815776.6544526-CDS-L-elsbetiae_contig18639:486..1017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18639 487..1017 +
1691683095.087488-CDS-L-elsbetiae_contig18639:486..10171691683095.087488-CDS-L-elsbetiae_contig18639:486..1017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18639 487..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18639.5450.1prot_L-elsbetiae_contig18639.5450.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18639 487..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18639.5450.1

>prot_L-elsbetiae_contig18639.5450.1 ID=prot_L-elsbetiae_contig18639.5450.1|Name=mRNA_L-elsbetiae_contig18639.5450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MKPQFVLLGVCNNSDGIIRAIELDPREDFLLNPSPGYSVVNLRYAPLRVF
AYIKTADDAGLHLEGLDRGVIAVAPVEKDFTIEGVGKREFTFRRRQLPLV
AGCVSSVFRSQGQTMRNIILDIRPPPGKGMDSAAVYVALSRATSLEALSL
LPRDFGGPQPATKQRHPCHHQVPPST*
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mRNA from alignment at L-elsbetiae_contig18639:487..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18639.5450.1 ID=mRNA_L-elsbetiae_contig18639.5450.1|Name=mRNA_L-elsbetiae_contig18639.5450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=531bp|location=Sequence derived from alignment at L-elsbetiae_contig18639:487..1017+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCCCCAGTTTGTCCTCTTAGGCGTTTGCAACAATTCCGACGGCAT CATCCGGGCCATCGAACTTGATCCCCGCGAGGACTTCCTCCTCAACCCTT CGCCTGGTTACTCCGTCGTCAACCTGCGGTATGCGCCTCTTCGGGTCTTC GCCTACATCAAGACCGCCGACGACGCTGGACTGCATTTAGAAGGCTTGGA CCGTGGTGTAATCGCTGTCGCTCCCGTCGAAAAAGACTTCACCATCGAAG GCGTCGGCAAGAGAGAATTTACCTTCAGAAGACGGCAGCTTCCGCTAGTC GCTGGCTGCGTCTCCTCCGTCTTCCGAAGCCAGGGCCAAACCATGCGGAA CATCATCCTCGACATTCGACCTCCTCCCGGCAAAGGCATGGACAGCGCAG CCGTTTATGTTGCTTTATCTCGTGCCACGAGCCTAGAGGCCCTCAGTCTT CTTCCCCGTGACTTTGGAGGACCTCAACCAGCCACCAAACAAAGACATCC TTGCCATCATCAAGTACCTCCATCGACTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18639:487..1017+

>mRNA_L-elsbetiae_contig18639.5450.1 ID=mRNA_L-elsbetiae_contig18639.5450.1|Name=mRNA_L-elsbetiae_contig18639.5450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig18639:487..1017+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCCCCAGTTTGTCCTCTTAGGCGTTTGCAACAATTCCGACGGCAT
CATCCGGGCCATCGAACTTGATCCCCGCGAGGACTTCCTCCTCAACCCTT
CGCCTGGTTACTCCGTCGTCAACCTGCGGTATGCGCCTCTTCGGGTCTTC
GCCTACATCAAGACCGCCGACGACGCTGGACTGCATTTAGAAGGCTTGGA
CCGTGGTGTAATCGCTGTCGCTCCCGTCGAAAAAGACTTCACCATCGAAG
GCGTCGGCAAGAGAGAATTTACCTTCAGAAGACGGCAGCTTCCGCTAGTC
GCTGGCTGCGTCTCCTCCGTCTTCCGAAGCCAGGGCCAAACCATGCGGAA
CATCATCCTCGACATTCGACCTCCTCCCGGCAAAGGCATGGACAGCGCAG
CCGTTTATGTTGCTTTATCTCGTGCCACGAGCCTAGAGGCCCTCAGTCTT
CTTCCCCGTGACTTTGGAGGACCTCAACCAGCCACCAAACAAAGACATCC
TTGCCATCATCAAGTACCTCCATCGACTTGAATGAAGCCCCAGTTTGTCC
TCTTAGGCGTTTGCAACAATTCCGACGGCATCATCCGGGCCATCGAACTT
GATCCCCGCGAGGACTTCCTCCTCAACCCTTCGCCTGGTTACTCCGTCGT
CAACCTGCGGTATGCGCCTCTTCGGGTCTTCGCCTACATCAAGACCGCCG
ACGACGCTGGACTGCATTTAGAAGGCTTGGACCGTGGTGTAATCGCTGTC
GCTCCCGTCGAAAAAGACTTCACCATCGAAGGCGTCGGCAAGAGAGAATT
TACCTTCAGAAGACGGCAGCTTCCGCTAGTCGCTGGCTGCGTCTCCTCCG
TCTTCCGAAGCCAGGGCCAAACCATGCGGAACATCATCCTCGACATTCGA
CCTCCTCCCGGCAAAGGCATGGACAGCGCAGCCGTTTATGTTGCTTTATC
TCGTGCCACGAGCCTAGAGGCCCTCAGTCTTCTTCCCCGTGACTTTGGAG
GACCTCAACCAGCCACCAAACAAAGACATCCTTGCCATCATCAAGTACCT
CCATCGACTTGA
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