mRNA_L-elsbetiae_contig18636.5449.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18636.5449.1
Unique NamemRNA_L-elsbetiae_contig18636.5449.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18636.5449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18636contigL-elsbetiae_contig18636:838..2505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size769
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18636.5449.1prot_L-elsbetiae_contig18636.5449.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18636 1152..2503 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.5589156-UTR-L-elsbetiae_contig18636:837..11511622815776.5589156-UTR-L-elsbetiae_contig18636:837..1151Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18636 838..1151 -
1691683095.037826-UTR-L-elsbetiae_contig18636:837..11511691683095.037826-UTR-L-elsbetiae_contig18636:837..1151Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18636 838..1151 -
1622815776.6094315-UTR-L-elsbetiae_contig18636:2503..25051622815776.6094315-UTR-L-elsbetiae_contig18636:2503..2505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18636 2504..2505 -
1691683095.0770593-UTR-L-elsbetiae_contig18636:2503..25051691683095.0770593-UTR-L-elsbetiae_contig18636:2503..2505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18636 2504..2505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.5718608-CDS-L-elsbetiae_contig18636:1151..12691622815776.5718608-CDS-L-elsbetiae_contig18636:1151..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18636 1152..1269 -
1691683095.0472052-CDS-L-elsbetiae_contig18636:1151..12691691683095.0472052-CDS-L-elsbetiae_contig18636:1151..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18636 1152..1269 -
1622815776.584618-CDS-L-elsbetiae_contig18636:1910..20981622815776.584618-CDS-L-elsbetiae_contig18636:1910..2098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18636 1911..2098 -
1691683095.0584087-CDS-L-elsbetiae_contig18636:1910..20981691683095.0584087-CDS-L-elsbetiae_contig18636:1910..2098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18636 1911..2098 -
1622815776.5982466-CDS-L-elsbetiae_contig18636:2356..25031622815776.5982466-CDS-L-elsbetiae_contig18636:2356..2503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18636 2357..2503 -
1691683095.0681124-CDS-L-elsbetiae_contig18636:2356..25031691683095.0681124-CDS-L-elsbetiae_contig18636:2356..2503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18636 2357..2503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18636.5449.1

>prot_L-elsbetiae_contig18636.5449.1 ID=prot_L-elsbetiae_contig18636.5449.1|Name=mRNA_L-elsbetiae_contig18636.5449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MLGIDMEFVLSPRIAWLQSYPGLSADGVASVIKASPSVLGLTVESLGGKA
VWLERRLDVDRRAVSKTVERNPSLFGTSIGSLEPKLVWLRGKLGLEDPDV
ARVIRGCPNILRCSVEENLEPTIVWLQNRLHLDRKVRTVFRSSEDGGGRF
*
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mRNA from alignment at L-elsbetiae_contig18636:838..2505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18636.5449.1 ID=mRNA_L-elsbetiae_contig18636.5449.1|Name=mRNA_L-elsbetiae_contig18636.5449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig18636:838..2505- (Laminarionema elsbetiae ELsaHSoW15)
AGATGCTCGGTATCGACATGGAGTTTGTCCTCAGCCCCCGAATCGCGTGG
CTTCAGAGCTACCCGGGCCTCTCGGCAGACGGAGTGGCTAGCGTTATCAA
GGCCTCCCCGAGTGTCCTGGGTCTCACTGTCGAGAGCCTGGGAGGGAAGG
TGAGATTTGGGTGGTGATTGTACTAAATAGTGCTCTTATTCCCTGTCCCA
ATACTGGTACCCCAATGGCTCTTTCTCTTCAAACGGGTGACCGCTAGCAG
AGCAGAGAAGAAGCTGCACTGGCGGCAGAGAATCGCGTACCAGGTACTGG
CTAAGGGGCAAGAGACGCTTGAGGGCCGCCGGCGTTGTTGTCTCTTCCGT
CAGGTCGAATCGGTTCGGATGCTGATTGGTTGACGATTGATGGTTGGTCG
CGCGCAGGCCGTGTGGCTGGAGAGGCGGCTGGACGTGGACCGCCGGGCGG
TGTCCAAGACCGTCGAACGGAACCCGTCGCTTTTTGGGACCAGCATCGGA
TCCCTTGAGCCGAAGCTGGTGTGGCTGAGGGGGAAACTGGGGCTAGAGGA
CCCAGACGTTGCCCGCGTGATCCGGGGCTGTCCCAACATTCTCAGGCAAA
TACATAAAAAACAGTTTCAAGACAGACGATTAAAATTGCAAGTACATCTC
ACGGGGGACTCTCTCGCTTGTTGTCTAGCGGGCGCTGTTCATTTTTGCTT
CCTGCCCAAGAAAGGAAGTGTGGGGGGGCGCGAACAGTACACACCTTACC
CAGAAGAAAACACCAAGATCGAGGGGTTTGAAGCGATCAGATTAATCAGG
AAGTGGGTGAGGTTGATGGGTTGCTCTTTGGGCGGGCCACCGTTTTCTAT
TTCGCCAGGCTTGGTCTAATTTGTGTTGTCACCTCTAGGTATCGCCGATG
GGCGAATGGTGTTGTGAAGTGCAACTGGGCGTATGCAGCTAGATATGTAT
CGGCTATCCACCAAACATACCTGCTCGACACCCGCCGTAGTATCAACCCA
TCATTGCAGCCATGCCTTGCAAAAACTAGCCCGCCCCTCTCTCAGATACT
GTGTCTGGGTTTAACCCTCCTTCTCCCCTTCGTGCTGCTTGGTCGGCAAG
AGCTTGTTGATGTGCTCCGTCCCGTTGTTGTACATGGTTCGAAGATATGT
GCCGAAGTGGGGGCCCGGGACAACCTGCGGATATGCACCTTGACGAAATC
GACCTCCGCCGTTCCTCCTCCCTTCGTATCTATCAGATGTAGCGTGGAGG
AGAACCTGGAGCCCACGATAGTGTGGTTGCAGAACCGGCTGCACTTGGAC
CGCAAGGTTCGTACAGTTTTTAGGAGTAGCGAAGATGGTGGTGGTCGATT
TTAGTGTTGGGTATGATAATGTACTTTCTTATTCCCGAGTCCTGAGTGTC
GAAACGGCTATCTGCGGCCGCGGTATCCACTTGTCTTGCCTGCCTGAATC
CAGAGCGAGCTGCTATTTAGTACATTTTACTGATGGGTTGAGGCGACGGA
CACTACGGGTGGCGTATCTTTGTTTTTTGGGGTACAAGCAGGCACTGCGT
GACTTTGTGCACTTCGCTTGCTCTCTGTGGTCGTCGTGAACGTATTGTTT
TGTACGGGTGGGAGACAAGCCAAGTGCTCCGAGGAGGCGTCGGTTCTCCT
TCGCGCTTAATCTTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18636:838..2505-

>mRNA_L-elsbetiae_contig18636.5449.1 ID=mRNA_L-elsbetiae_contig18636.5449.1|Name=mRNA_L-elsbetiae_contig18636.5449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig18636:838..2505- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGGTATCGACATGGAGTTTGTCCTCAGCCCCCGAATCGCGTGGCT
TCAGAGCTACCCGGGCCTCTCGGCAGACGGAGTGGCTAGCGTTATCAAGG
CCTCCCCGAGTGTCCTGGGTCTCACTGTCGAGAGCCTGGGAGGGAAGATG
CTCGGTATCGACATGGAGTTTGTCCTCAGCCCCCGAATCGCGTGGCTTCA
GAGCTACCCGGGCCTCTCGGCAGACGGAGTGGCTAGCGTTATCAAGGCCT
CCCCGAGTGTCCTGGGTCTCACTGTCGAGAGCCTGGGAGGGAAGGCCGTG
TGGCTGGAGAGGCGGCTGGACGTGGACCGCCGGGCGGTGTCCAAGACCGT
CGAACGGAACCCGTCGCTTTTTGGGACCAGCATCGGATCCCTTGAGCCGA
AGCTGGTGTGGCTGAGGGGGAAACTGGGGCTAGAGGACCCAGACGTTGCC
CGCGTGATCCGGGGCTGTCCCAACATTCTCAGGCCGTGTGGCTGGAGAGG
CGGCTGGACGTGGACCGCCGGGCGGTGTCCAAGACCGTCGAACGGAACCC
GTCGCTTTTTGGGACCAGCATCGGATCCCTTGAGCCGAAGCTGGTGTGGC
TGAGGGGGAAACTGGGGCTAGAGGACCCAGACGTTGCCCGCGTGATCCGG
GGCTGTCCCAACATTCTCAGATGTAGCGTGGAGGAGAACCTGGAGCCCAC
GATAGTGTGGTTGCAGAACCGGCTGCACTTGGACCGCAAGGTTCGTACAG
TTTTTAGGAGTAGCGAAGATGGTGGTGGTCGATTTTAGATGTAGCGTGGA
GGAGAACCTGGAGCCCACGATAGTGTGGTTGCAGAACCGGCTGCACTTGG
ACCGCAAGGTTCGTACAGTTTTTAGGAGTAGCGAAGATGGTGGTGGTCGA
TTTTAG
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