mRNA_L-elsbetiae_contig18629.5444.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18629.5444.1
Unique NamemRNA_L-elsbetiae_contig18629.5444.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18629.5444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18629contigL-elsbetiae_contig18629:514..1008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size406
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.112185-CDS-L-elsbetiae_contig18629:513..7421622815776.112185-CDS-L-elsbetiae_contig18629:513..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18629 514..742 +
1691683094.7279513-CDS-L-elsbetiae_contig18629:513..7421691683094.7279513-CDS-L-elsbetiae_contig18629:513..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18629 514..742 +
1622815776.1222005-CDS-L-elsbetiae_contig18629:831..10071622815776.1222005-CDS-L-elsbetiae_contig18629:831..1007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18629 832..1007 +
1691683094.7368195-CDS-L-elsbetiae_contig18629:831..10071691683094.7368195-CDS-L-elsbetiae_contig18629:831..1007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18629 832..1007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18629.5444.1prot_L-elsbetiae_contig18629.5444.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18629 514..1007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18629.5444.1

>prot_L-elsbetiae_contig18629.5444.1 ID=prot_L-elsbetiae_contig18629.5444.1|Name=mRNA_L-elsbetiae_contig18629.5444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
VQKSAFHAGLSLGWSFLSACSNFRGFLAISRSRGTAFTRSYSKGWFFTPG
AFSRLVFSRPMLKYRWSCSCSKRPFFFFTPAARSQRVAFSVLLFLMLSPL
RLMGLYIYFHLLFRQRFLTPAAFSQPVAFSALLPF
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mRNA from alignment at L-elsbetiae_contig18629:514..1008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18629.5444.1 ID=mRNA_L-elsbetiae_contig18629.5444.1|Name=mRNA_L-elsbetiae_contig18629.5444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=495bp|location=Sequence derived from alignment at L-elsbetiae_contig18629:514..1008+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCAAAAGTCTGCTTTTCACGCCGGCCTCTCTCTCGGTTGGTCTTTTCT
CAGCGCATGCTCAAACTTTCGGGGCTTTTTGGCCATCTCACGCTCACGCG
GCACAGCTTTCACGCGCTCATATTCTAAAGGTTGGTTTTTCACGCCGGGT
GCTTTCTCTCGGTTGGTGTTTTCTCGGCCCATGCTCAAATACCGATGGTC
GTGCTCCTGTTCAAAGCGCCCTTTTTTTTTTTTTTTTTTTTTTAACGCCG
GACGCGCTCTCTCGGCTTGTCGCTTTCTCGGCCCTTTCAATATTTATCAT
TTTCTGTTCCGCCGGCACTTTTCACGCCGGCCGCTCGTTCTCAGCGGGTC
GCTTTCTCGGTGCTTCTCTTTCTCATGCTCAGCCCGCTCAGGCTCATGGG
GCTTTACATATATTTTCATCTTCTGTTCCGCCAGCGTTTTCTCACACCGG
CCGCTTTTTCTCAGCCTGTCGCTTTCTCGGCGCTTCTCCCCTTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18629:514..1008+

>mRNA_L-elsbetiae_contig18629.5444.1 ID=mRNA_L-elsbetiae_contig18629.5444.1|Name=mRNA_L-elsbetiae_contig18629.5444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig18629:514..1008+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCAAAAGTCTGCTTTTCACGCCGGCCTCTCTCTCGGTTGGTCTTTTCT
CAGCGCATGCTCAAACTTTCGGGGCTTTTTGGCCATCTCACGCTCACGCG
GCACAGCTTTCACGCGCTCATATTCTAAAGGTTGGTTTTTCACGCCGGGT
GCTTTCTCTCGGTTGGTGTTTTCTCGGCCCATGCTCAAATACCGATGGTC
GTGCTCCTGTTCAAAGCGCCCTTTTTTTTGTTCAAAAGTCTGCTTTTCAC
GCCGGCCTCTCTCTCGGTTGGTCTTTTCTCAGCGCATGCTCAAACTTTCG
GGGCTTTTTGGCCATCTCACGCTCACGCGGCACAGCTTTCACGCGCTCAT
ATTCTAAAGGTTGGTTTTTCACGCCGGGTGCTTTCTCTCGGTTGGTGTTT
TCTCGGCCCATGCTCAAATACCGATGGTCGTGCTCCTGTTCAAAGCGCCC
TTTTTTTTTTTTCACGCCGGCCGCTCGTTCTCAGCGGGTCGCTTTCTCGG
TGCTTCTCTTTCTCATGCTCAGCCCGCTCAGGCTCATGGGGCTTTACATA
TATTTTCATCTTCTGTTCCGCCAGCGTTTTCTCACACCGGCCGCTTTTTC
TCAGCCTGTCGCTTTCTCGGCGCTTCTCCCCTTTTTTTCACGCCGGCCGC
TCGTTCTCAGCGGGTCGCTTTCTCGGTGCTTCTCTTTCTCATGCTCAGCC
CGCTCAGGCTCATGGGGCTTTACATATATTTTCATCTTCTGTTCCGCCAG
CGTTTTCTCACACCGGCCGCTTTTTCTCAGCCTGTCGCTTTCTCGGCGCT
TCTCCCCTTT
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