mRNA_L-elsbetiae_contig186.5435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig186.5435.1
Unique NamemRNA_L-elsbetiae_contig186.5435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig186.5435.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.820e-18
Identity = 66/201 (32.84%), Postives = 93/201 (46.27%), Query Frame = 2 
Query:  422 GKTALAVACRFTNSKSRFAVVRELLGGGASATVADKAGALALHEAAWKGHTDVFALLLSAAPTTISVCNWQGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMAVQRGDETMIRMFLDRKGIDAAGGLGVIPRAMFNALQFNNIKALQMPFNVEGEQKQKDWANAAVNSVTMLHSATMHRSFAGLQMLLSAG 1024
            G T L  ACR   +  R+ VVRELL GGA        G +ALH A+++  TDV  LLL  A  T++     G +                                      AVQ G + ++R+ LD  G+DA GGLG +P+A++ A +  + K L M   V GE+ ++ WA    N  T+LH AT   S + +  +LSAG
Sbjct:  115 GHTPLMQACRLFGAADRYVVVRELLRGGADPARQSDNGMIALHYASFRDDTDVIGLLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDH-GMDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPYNESTLLHCATSVGSLSVMSAILSAG 314
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig186.5435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAW5_9PHAE2.820e-1832.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig186contigL-elsbetiae_contig186:443..2726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue4.3e-14
Seed eggNOG ortholog2880.D8LME7
KEGG koko:K15503
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons2
Model size1744
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig186.5435.1prot_L-elsbetiae_contig186.5435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig186 843..1490 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.054366-UTR-L-elsbetiae_contig186:442..8421622815775.054366-UTR-L-elsbetiae_contig186:442..842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig186 443..842 +
1691683093.9886243-UTR-L-elsbetiae_contig186:442..8421691683093.9886243-UTR-L-elsbetiae_contig186:442..842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig186 443..842 +
1622815775.0816724-UTR-L-elsbetiae_contig186:1490..17671622815775.0816724-UTR-L-elsbetiae_contig186:1490..1767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig186 1491..1767 +
1691683094.0130997-UTR-L-elsbetiae_contig186:1490..17671691683094.0130997-UTR-L-elsbetiae_contig186:1490..1767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig186 1491..1767 +
1622815775.0941305-UTR-L-elsbetiae_contig186:2307..27261622815775.0941305-UTR-L-elsbetiae_contig186:2307..2726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig186 2308..2726 +
1691683094.0211751-UTR-L-elsbetiae_contig186:2307..27261691683094.0211751-UTR-L-elsbetiae_contig186:2307..2726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig186 2308..2726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.0679328-CDS-L-elsbetiae_contig186:842..14901622815775.0679328-CDS-L-elsbetiae_contig186:842..1490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig186 843..1490 +
1691683094.0010614-CDS-L-elsbetiae_contig186:842..14901691683094.0010614-CDS-L-elsbetiae_contig186:842..1490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig186 843..1490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig186.5435.1

>prot_L-elsbetiae_contig186.5435.1 ID=prot_L-elsbetiae_contig186.5435.1|Name=mRNA_L-elsbetiae_contig186.5435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
MLSTTMYGKTALAVACRFTNSKSRFAVVRELLGGGASATVADKAGALALH
EAAWKGHTDVFALLLSAAPTTISVCNWQGLSALGCATLNDHTEAVSFLLS
AGASDKAIWLEKGLSPLNMAVQRGDETMIRMFLDRKGIDAAGGLGVIPRA
MFNALQFNNIKALQMPFNVEGEQKQKDWANAAVNSVTMLHSATMHRSFAG
LQMLLSAGLISTPKP*
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mRNA from alignment at L-elsbetiae_contig186:443..2726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig186.5435.1 ID=mRNA_L-elsbetiae_contig186.5435.1|Name=mRNA_L-elsbetiae_contig186.5435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2284bp|location=Sequence derived from alignment at L-elsbetiae_contig186:443..2726+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTGTTTCCCATGGCCTCGCCCTCGCTGCGTTCGGGCCGGGCAGACGA
GAAGTACAGCTCGATGTCGGTGGACGAAAAGTTGTTGCTGCAGCTGTTTG
AAGGATCCAACCAAGCGGTGAAGCAGCTGCTAGACGACGGGGCGCTTGTA
GACGGCTCGCCGGGGCTTCCGTACCGACCGCTCATCGTGGCAGCTAGGTT
TGGACGGCTCGAATCAGCCAAGCTCCTGGTGCAGAGAGGTGCCAGCCTAG
ACGTGTCTCAATCGAATGATATGTGGAAAGATGAAGATGACCCAGCAGCC
AGCACGATAGTGCGTGCGGGGTCGCGTGCCCTACACGCAGCAGCGTTTGG
TGGCGCGGACGAAACCGTCCGCGCGCTGTTAGAGCTGGGTGCCGACCCAC
ATGCTGTCGACAACTATGTACGGCAAGACTGCTTTGGCGGTGGCCTGCAG
GTTCACTAACTCTAAGTCCCGCTTTGCCGTTGTGCGAGAGCTATTGGGCG
GGGGTGCAAGCGCTACCGTGGCGGACAAGGCTGGCGCACTGGCATTGCAC
GAGGCAGCCTGGAAAGGCCATACGGACGTTTTTGCCTTGTTACTGTCGGC
AGCACCAACAACAATCTCGGTTTGTAACTGGCAGGGCCTTTCCGCACTAG
GCTGTGCCACGTTAAACGACCACACGGAGGCAGTCTCGTTCCTGCTGTCG
GCGGGGGCGAGTGACAAGGCGATATGGTTGGAGAAGGGTTTGAGTCCGCT
GAACATGGCGGTCCAAAGAGGTGACGAAACCATGATTCGGATGTTTCTCG
ACAGAAAAGGAATCGACGCGGCCGGGGGGTTGGGCGTGATTCCGCGTGCC
ATGTTCAACGCACTTCAATTCAATAACATAAAGGCCCTCCAGATGCCTTT
CAACGTAGAGGGGGAGCAAAAGCAGAAGGACTGGGCGAATGCAGCCGTAA
ATAGTGTCACGATGCTGCACAGTGCGACGATGCACCGCTCGTTCGCAGGC
TTACAAATGCTCTTGTCGGCGGGGCTGATCTCAACGCCGAAACCGTGACG
GGCACCACAGCCCGGGACTTGATTGATGTCGAGCTCCCAGGCCACCAAGA
GAAGGACGAAGACGAGGAGGACGCGATGAAGGCGGCCCTCGACCGGTTGT
TCGAAAGGGCGCCGGCGTGCCTCGCCCGCTCCTGGGCGTGGCCTGCCGGG
ATCCTGACTGCTGCCGGAATAGCGTCAGATGTTGCGGTCTGGCGCAGGCA
AGCGGTAGCCGAGTCGTTGGGCGTGACGATCTTCCGGCCAACGAGAGGAG
GGTTTTTCTCCAGACGCTTCGCCAGGTAAGGGGTGCGCCGGGAGAAGCAC
CGCTGTCTTCACGCAGGCTGGCAAGGGCTCTCGGCACCTTGAATATATTC
TTATGTAATGATTTGTCTTAATTTTGTTCGATTCGTTGTATGTGTGCGCC
AAGCGTTACCGAACTGTGGTGTGTCGCGTCCAGTTCACCTGGCACGAGAA
GTGATGAAGTATTCCACCTTCAGTGGCGGTGGCTGGCAAAGTCGAGCACT
GATGTTATGCACTGCGTGCTCCAGTCACGCACCCGCAACACTGTCGGCAT
CTTTCCTCGCCCAGGTGACTTGTTAAGGTCATGCTTGGCTTCGCCTTGCC
CTTAGAACTTTGTCATATTTAGCCCCACAGTTATATAGCCCCTATGAGGA
GCCAGTCGCCGCGTTTAGTGTGTTGACCTCGATTCTATTGCACTCCCGAT
TCGCGCTGTAAAACACTTTTTTTACCGCTGTGCGCCCACATCTCCTCTGG
GGTAGCGTGTGAGAGAGGTGACCATGACGACGATTTATTTCCCTTTGACG
ATGCTCTGATGACAGGTACTCTCAAAAGTGACAGGAAAATCCGCGACGCA
CTGCTGTCACGATGTGAGCATTGGAAGGGCAAATCTGCCACTGGAGACAA
TTCGGACTGATTGGATACCAGCCAATGTTGAGTTATTGGCATTACCGCGC
TATTGATGCTGGTGCTGCTAGTGCTGCGGAAAGCCCTGCTCTTCTTTGAG
TGCCTGTAATCGCATACGCGTTCAGGCACTTATGATCGATTCGACCCGCC
GGAAATTCAGGCTTGTACTCGCGTAAGACCAGAAGCAGCCAGCATGGCTC
GGTTTATCTGGTACGTAGAAAGCGATGGAAAGCACCGAAATACGTACTTA
ACCCGTTGCCTTGAGTACACGCGCGCGTTGTTGGGCCGAGTATCTGCATA
GAGGGTCGCCATGTTCCCGCGTGGCTGATTACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig186:443..2726+

>mRNA_L-elsbetiae_contig186.5435.1 ID=mRNA_L-elsbetiae_contig186.5435.1|Name=mRNA_L-elsbetiae_contig186.5435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig186:443..2726+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTCGACAACTATGTACGGCAAGACTGCTTTGGCGGTGGCCTGCAG
GTTCACTAACTCTAAGTCCCGCTTTGCCGTTGTGCGAGAGCTATTGGGCG
GGGGTGCAAGCGCTACCGTGGCGGACAAGGCTGGCGCACTGGCATTGCAC
GAGGCAGCCTGGAAAGGCCATACGGACGTTTTTGCCTTGTTACTGTCGGC
AGCACCAACAACAATCTCGGTTTGTAACTGGCAGGGCCTTTCCGCACTAG
GCTGTGCCACGTTAAACGACCACACGGAGGCAGTCTCGTTCCTGCTGTCG
GCGGGGGCGAGTGACAAGGCGATATGGTTGGAGAAGGGTTTGAGTCCGCT
GAACATGGCGGTCCAAAGAGGTGACGAAACCATGATTCGGATGTTTCTCG
ACAGAAAAGGAATCGACGCGGCCGGGGGGTTGGGCGTGATTCCGCGTGCC
ATGTTCAACGCACTTCAATTCAATAACATAAAGGCCCTCCAGATGCCTTT
CAACGTAGAGGGGGAGCAAAAGCAGAAGGACTGGGCGAATGCAGCCGTAA
ATAGTGTCACGATGCTGCACAGTGCGACGATGCACCGCTCGTTCGCAGGC
TTACAAATGCTCTTGTCGGCGGGGCTGATCTCAACGCCGAAACCGTGAAT
GCTGTCGACAACTATGTACGGCAAGACTGCTTTGGCGGTGGCCTGCAGGT
TCACTAACTCTAAGTCCCGCTTTGCCGTTGTGCGAGAGCTATTGGGCGGG
GGTGCAAGCGCTACCGTGGCGGACAAGGCTGGCGCACTGGCATTGCACGA
GGCAGCCTGGAAAGGCCATACGGACGTTTTTGCCTTGTTACTGTCGGCAG
CACCAACAACAATCTCGGTTTGTAACTGGCAGGGCCTTTCCGCACTAGGC
TGTGCCACGTTAAACGACCACACGGAGGCAGTCTCGTTCCTGCTGTCGGC
GGGGGCGAGTGACAAGGCGATATGGTTGGAGAAGGGTTTGAGTCCGCTGA
ACATGGCGGTCCAAAGAGGTGACGAAACCATGATTCGGATGTTTCTCGAC
AGAAAAGGAATCGACGCGGCCGGGGGGTTGGGCGTGATTCCGCGTGCCAT
GTTCAACGCACTTCAATTCAATAACATAAAGGCCCTCCAGATGCCTTTCA
ACGTAGAGGGGGAGCAAAAGCAGAAGGACTGGGCGAATGCAGCCGTAAAT
AGTGTCACGATGCTGCACAGTGCGACGATGCACCGCTCGTTCGCAGGCTT
ACAAATGCTCTTGTCGGCGGGGCTGATCTCAACGCCGAAACCGTGA
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