mRNA_L-elsbetiae_contig18597.5434.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18597.5434.1
Unique NamemRNA_L-elsbetiae_contig18597.5434.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18597.5434.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.610e-37
Identity = 74/116 (63.79%), Postives = 84/116 (72.41%), Query Frame = 1 
Query:    1 RFQPFGRAGGEGAKVAERLYEDFGMSGRKQYSPEAADERKLVLKWLEEEIRMGPRGIADMVEQEPRLAEQDTEAVSARLAWLKERLLLSDEQIRSLVHRRPSVLCRSVEDGMEPKV 348
            RFQPFGRAGGEG+KVAERLYEDFG++  K+YSPEA DERK VL WLE ++RM  R IADMVEQEPR+AEQ+T A+SARL                     PSVLCRSV+D MEPKV
Sbjct:   77 RFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKV 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18597.5434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI3.610e-3763.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18597contigL-elsbetiae_contig18597:548..2657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue6.4e-32
Seed eggNOG ortholog2880.D7FVG4
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000990.1
Exons2
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.0111637-CDS-L-elsbetiae_contig18597:547..8921622815775.0111637-CDS-L-elsbetiae_contig18597:547..892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18597 548..892 +
1691683093.9657564-CDS-L-elsbetiae_contig18597:547..8921691683093.9657564-CDS-L-elsbetiae_contig18597:547..892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18597 548..892 +
1622815775.0245721-CDS-L-elsbetiae_contig18597:2471..26571622815775.0245721-CDS-L-elsbetiae_contig18597:2471..2657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18597 2472..2657 +
1691683093.977493-CDS-L-elsbetiae_contig18597:2471..26571691683093.977493-CDS-L-elsbetiae_contig18597:2471..2657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18597 2472..2657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18597.5434.1prot_L-elsbetiae_contig18597.5434.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18597 548..2657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18597.5434.1

>prot_L-elsbetiae_contig18597.5434.1 ID=prot_L-elsbetiae_contig18597.5434.1|Name=mRNA_L-elsbetiae_contig18597.5434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
RFQPFGRAGGEGAKVAERLYEDFGMSGRKQYSPEAADERKLVLKWLEEEI
RMGPRGIADMVEQEPRLAEQDTEAVSARLAWLKERLLLSDEQIRSLVHRR
PSVLCRSVEDGMEPKVRWLQGELGLTDAEVAAMVASAPNVLTISIEGSMA
PKLGWLSRRLMLSNEQLAMVVTTCPQV
back to top

mRNA from alignment at L-elsbetiae_contig18597:548..2657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18597.5434.1 ID=mRNA_L-elsbetiae_contig18597.5434.1|Name=mRNA_L-elsbetiae_contig18597.5434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2110bp|location=Sequence derived from alignment at L-elsbetiae_contig18597:548..2657+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTTTCAGCCGTTCGGGCGCGCCGGGGGCGAGGGGGCCAAGGTCGCCGA
GCGCCTGTACGAGGACTTTGGGATGAGCGGCCGGAAGCAGTACTCCCCGG
AGGCGGCGGACGAGCGGAAGCTCGTCCTCAAGTGGCTGGAGGAGGAGATC
CGGATGGGGCCCCGGGGAATCGCGGACATGGTGGAGCAGGAGCCGCGCCT
GGCGGAGCAAGACACGGAGGCCGTCTCCGCGCGCCTGGCGTGGCTGAAGG
AGAGGCTCCTGTTGAGCGACGAGCAAATAAGGAGCCTGGTGCACAGGAGG
CCGTCCGTGCTGTGCCGGAGCGTGGAGGACGGCATGGAGCCCAAGGTGTG
GAAGGAGAGCGCGTTTCGGCGAGGCCGGGTCGGGTCGCTCCCGTGCCGGC
GCCCCCCTGTGTCGGCTTGCCGTCGTCGTCGGTTATGGCCCACCAAACGT
AAAAGCTGCGGCGTTTTTGTGTCCTGCTTTTTTATTCGCTACTTGACGGT
GGGTAGCTGCCCCCAGCTTCCGTGTTTTGTGCGATAGATCTTGATCAGCG
ATGCCGGTCTGTGTGAGCTTTACTGCAAAACTGCAGCTCGAGGCCGGCGG
CACGGCTTAGGAGGCGGGCGCGTTCCCGCCGGGAGCGTTGCTGACGGAAC
CCCAACACACACACACACACACACACACACACACACACATCTGTGGAACG
AAGAAAAATACCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCGTCTCATT
TTTTTTTTGTTTGTCTTTTGGGCGCCGCGCGGCGGGGGCCGGAAAGCCCC
ACAGACCGTNNNNNNNNNNCCCCAACACCCCACCACCAACACACACACAA
ACACACACACATCTGGGGAACGAAGAAAAATCCCCCCCCCCCCCCCCCGG
AATTTTGTCTCTCAGTGGTTTGTTGTTTGGCTCATGAGCGCGCACGGGCC
AGGTTGAGATTCAACCACGACGGCTTGAGGACAATGGGAGAGAAAAAACG
GCGTTTGGCGTGTCAACTCGACCAATTGTGTTACGGTGTGTTCCGTAGCA
ACCGACAGTCCCGCGGCCTCGTGCGCCCGGCGATACAGTAGTCAGTGGAG
CTTGTCGGGGTTAACGCCTCCAAACTTCTGACGATGACTGCCGTGTCTCC
AGCAACAGGCAAAGCTCTAATACATAGATTATGTATGTGTCTCCTGCTGT
ATACCGTACAACATGTCCTGGTTATCTAGAGCGAGTCAAATTAATTACAT
TTGTCTTGCTGCGGTGCCACAGGCTGGGCTGCAGCGGCCGGTTTGATGCC
GCAATGTACGTCTGCTAGTTCACGACAGGACTGCTGTGTATGTACCTGTA
CCAGCGTTGTCAACGGGCCGTTTCTCTTTTTTATTAGTGTATGCAAATGT
CAGCAGTCTATGTCCCGTCTGTGAAAATATCGTTCCAGAGGGGATCTGTT
GCAGGCATATTAAATAACTCCCGTCCTAAGATAAATATATTTATACTCGC
ACAAAATCCTCTTTTTTCAGTTTTTTTAGAAGAGATTCTGTTACAATCCG
TGAGTTCCCGAAAGGTTGCCTCGAGTGGTCGAACGATTCCCGCAACCGCC
GCCGCCGCCGCCGCCGCCGCTTTCTCCGCTTTCTTCGTCTTTGGTCAGAC
AATTTGCGGAAAGTAGGCCTATATTGTACACGAGCGTGCTTCAAAGCTGC
CCTTCCTAAATTCGACCCCTCAACTGCTACTGCTGTTTGTTACGAGCGTG
CTTCAAAGCTGCCCTCCCTAAATTCGGCCCCTCAACTGTTACTGCTGCTG
TTGCGAGCGTGCTTCAAAGCTGTCTTCCCTAAGTTCTACCCCTCAAAGTG
TTGCTGCTCCTGTTGCTGTTGCGTATTCACCCCCCCCGACACACTGCTGT
TCGATTATTTCCCCAACTCGCAAGGTGCGATGGCTGCAAGGAGAGCTTGG
TCTGACCGACGCCGAAGTGGCGGCGATGGTGGCGTCGGCGCCGAACGTGC
TCACCATCAGCATCGAGGGCAGCATGGCCCCGAAGCTGGGCTGGCTCTCC
CGGCGCCTCATGCTCTCGAACGAGCAGCTCGCCATGGTCGTCACCACCTG
TCCGCAGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18597:548..2657+

>mRNA_L-elsbetiae_contig18597.5434.1 ID=mRNA_L-elsbetiae_contig18597.5434.1|Name=mRNA_L-elsbetiae_contig18597.5434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig18597:548..2657+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTTTCAGCCGTTCGGGCGCGCCGGGGGCGAGGGGGCCAAGGTCGCCGA
GCGCCTGTACGAGGACTTTGGGATGAGCGGCCGGAAGCAGTACTCCCCGG
AGGCGGCGGACGAGCGGAAGCTCGTCCTCAAGTGGCTGGAGGAGGAGATC
CGGATGGGGCCCCGGGGAATCGCGGACATGGTGGAGCAGGAGCCGCGCCT
GGCGGAGCAAGACACGGAGGCCGTCTCCGCGCGCCTGGCGTGGCTGAAGG
AGAGGCTCCTGTTGAGCGACGAGCAAATAAGGAGCCTGGTGCACAGGAGG
CCGTCCGTGCTGTGCCGGAGCGTGGAGGACGGCATGGAGCCCAAGCGGTT
TCAGCCGTTCGGGCGCGCCGGGGGCGAGGGGGCCAAGGTCGCCGAGCGCC
TGTACGAGGACTTTGGGATGAGCGGCCGGAAGCAGTACTCCCCGGAGGCG
GCGGACGAGCGGAAGCTCGTCCTCAAGTGGCTGGAGGAGGAGATCCGGAT
GGGGCCCCGGGGAATCGCGGACATGGTGGAGCAGGAGCCGCGCCTGGCGG
AGCAAGACACGGAGGCCGTCTCCGCGCGCCTGGCGTGGCTGAAGGAGAGG
CTCCTGTTGAGCGACGAGCAAATAAGGAGCCTGGTGCACAGGAGGCCGTC
CGTGCTGTGCCGGAGCGTGGAGGACGGCATGGAGCCCAAGGTGCGATGGC
TGCAAGGAGAGCTTGGTCTGACCGACGCCGAAGTGGCGGCGATGGTGGCG
TCGGCGCCGAACGTGCTCACCATCAGCATCGAGGGCAGCATGGCCCCGAA
GCTGGGCTGGCTCTCCCGGCGCCTCATGCTCTCGAACGAGCAGCTCGCCA
TGGTCGTCACCACCTGTCCGCAGGTGGTGCGATGGCTGCAAGGAGAGCTT
GGTCTGACCGACGCCGAAGTGGCGGCGATGGTGGCGTCGGCGCCGAACGT
GCTCACCATCAGCATCGAGGGCAGCATGGCCCCGAAGCTGGGCTGGCTCT
CCCGGCGCCTCATGCTCTCGAACGAGCAGCTCGCCATGGTCGTCACCACC
TGTCCGCAGGTG
back to top