prot_L-elsbetiae_contig18595.5432.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18595.5432.1
Unique Nameprot_L-elsbetiae_contig18595.5432.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length121
Homology
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 5.350e-73
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSR 119
            PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQ+TPPLKDIAAAIKVSGISKIDLSM+EVKLIV+TLVYDGLLEEVRGA SRFNRDAGDGPVYKMAP  EVVN FTEVPCGTCKV +
Sbjct:  153 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMK 271          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.630e-25
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 120
            PA EITGG WY++ EFD+EFV  +S +V +Y+K+ ++  L+DIA A++ +G SK+DLS D+V+ IV +L++DG +E V+           +GP+Y+  P        TE PCG C V+ +
Sbjct:  160 PATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNP-ILTQMGLDNGPLYRSKPKITTPQFVTENPCGICPVANQ 278          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A1Y1IK16_KLENI (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI)

HSP 1 Score: 102 bits (255), Expect = 3.750e-24
Identity = 53/122 (43.44%), Postives = 76/122 (62.30%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDA-GDGPVYKMAP-TAEVVNPFTEVPCGTCKVSRE 120
            P++EITGG WYT+QEFD EF+  L   V  +V+ Q    L++IAA +K SG +K+DL +++ + +  TLVYDG +EE+    S F+ D   D   Y+M+P +    N FT +PCG C V  E
Sbjct:  152 PSREITGGAWYTEQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEI----SEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHE 269          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A4D9CUF8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.390e-23
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPP-LKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 120
            PAKEITGGPWYT+ EFD+EF++ LS  +  ++K+Q+ PP L  I   ++ SG+SK++L+  EV+LI+ +L YD  +E V+ +       +   P YK++     +N FT+ PCG C V  +
Sbjct:  501 PAKEITGGPWYTEHEFDHEFIEELSRAIYLFIKQQRKPPSLGIIVDYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGALPSSDGTPCYKISRQVTPLNHFTDFPCGRCPVQAQ 621          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN)

HSP 1 Score: 101 bits (251), Expect = 1.610e-23
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKV 117
            P+ EITGGPWY +QEFD+ F+  LS++V   +K      LK I   +  SGISK+ L  DE++ I+ TL+YDG +EEVR    R    A     YK++      N  +E PCG C V
Sbjct:  153 PSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVRAV--RLTPGANHETKYKISQEISTFNALSETPCGVCPV 267          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A8J4FX84_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4FX84_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 2.700e-22
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 120
            P++E+TGG WYT+ +FD EF+  L     SY++ Q+   L DIAA I+  G SK++L ++++  IV TLVYDG ++EV   G   N D    P   + P A  +   T+VPCG C V+ E
Sbjct:  147 PSRELTGGAWYTENQFDSEFINVLREACYSYIQRQKDASLGDIAAFIRSRGFSKVELRIEDIHTIVMTLVYDGRIDEVEPEGEDDNEDHYR-PAVLVVPDATAL---TDVPCGVCPVAGE 262          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: K3X6G1_GLOUD (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6G1_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 6.280e-22
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 120
            P+ EITGGPWY +QEFD+ F+  LS++V   +K   T  L  I   +  SGISK+ L  +E++ I+ TL+YDG +EEVR    R          YK++      N  +E PCG C V  +
Sbjct:  150 PSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGTSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRTV--RLTPGVSHETKYKVSHDISTFNYLSETPCGVCPVFNQ 267          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC)

HSP 1 Score: 95.1 bits (235), Expect = 2.920e-21
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 120
            P+++ITGGPWY +QEFD++F+  LS++V  +++ +    L+ I   +  SGI+K+ L  DE+  IV TL+YD  +EEVR A  R          YK+     V +  +E PCG C V  +
Sbjct:  141 PSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVRTA--RLANGEMRDVSYKICRDVSVFDGLSEAPCGVCPVFEQ 258          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI)

HSP 1 Score: 95.1 bits (235), Expect = 3.270e-21
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKV 117
            P+ EITGGPWY +QEFD+ F+  LS++V   +K      L  I   +  SGISK+ L  +E++ I+ TL+YDG +EEVR A             YK++      N  +E PCG C V
Sbjct:  154 PSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSASHEVK--------YKVSQQITTFNYLSETPCGVCPV 262          
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A2J8A2J4_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A2J4_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 4.800e-21
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 0
Query:    1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 120
            P++E+TGG WYT+ +FD EF+  L     SY+  Q    L  IA+ I+  G SK++L +++++ IV TLVYDG ++EV   G   N D    P     P +    P T+VPCG C V  E
Sbjct:   84 PSRELTGGAWYTENQFDSEFINVLREACFSYIVRQGDASLGTIASFIRAKGFSKVELRIEDIQTIVMTLVYDGRVDEVEPEGDDDNEDHYR-PAVLCVPDS---TPLTDVPCGVCPVVGE 199          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT94_ECTSI5.350e-7392.44DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A7R9U7U3_9STRA1.630e-2541.67DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A1Y1IK16_KLENI3.750e-2443.44DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A4D9CUF8_9STRA1.390e-2341.32Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2D4BDY6_PYTIN1.610e-2342.74DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A8J4FX84_9CHLO2.700e-2241.67DNA-directed RNA polymerase III subunit RPC6 n=3 T... [more]
K3X6G1_GLOUD6.280e-2240.00DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A067BY85_SAPPC2.920e-2138.33DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A0W8DBA8_PHYNI3.270e-2140.17DNA-directed RNA polymerase III subunit RPC6 n=24 ... [more]
A0A2J8A2J4_9CHLO4.800e-2140.00DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 36..118
e-value: 1.6E-11
score: 44.2
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 1..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18595contigL-elsbetiae_contig18595:801..2918 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18595.5432.1mRNA_L-elsbetiae_contig18595.5432.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18595 801..2918 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18595.5432.1 ID=prot_L-elsbetiae_contig18595.5432.1|Name=mRNA_L-elsbetiae_contig18595.5432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVS
GISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPT
AEVVNPFTEVPCGTCKVSRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007832RNA_pol_Rpc34
IPR016049RNA_pol_Rpc34-like