mRNA_L-elsbetiae_contig18595.5432.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI) HSP 1 Score: 228 bits (581), Expect = 5.350e-73 Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSR 357 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQ+TPPLKDIAAAIKVSGISKIDLSM+EVKLIV+TLVYDGLLEEVRGA SRFNRDAGDGPVYKMAP EVVN FTEVPCGTCKV + Sbjct: 153 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMK 271
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.630e-25 Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 360 PA EITGG WY++ EFD+EFV +S +V +Y+K+ ++ L+DIA A++ +G SK+DLS D+V+ IV +L++DG +E V+ +GP+Y+ P TE PCG C V+ + Sbjct: 160 PATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNP-ILTQMGLDNGPLYRSKPKITTPQFVTENPCGICPVANQ 278
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A1Y1IK16_KLENI (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI) HSP 1 Score: 102 bits (255), Expect = 3.750e-24 Identity = 53/122 (43.44%), Postives = 76/122 (62.30%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDA-GDGPVYKMAP-TAEVVNPFTEVPCGTCKVSRE 360 P++EITGG WYT+QEFD EF+ L V +V+ Q L++IAA +K SG +K+DL +++ + + TLVYDG +EE+ S F+ D D Y+M+P + N FT +PCG C V E Sbjct: 152 PSREITGGAWYTEQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEI----SEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHE 269
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A4D9CUF8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF8_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.390e-23 Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPP-LKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 360 PAKEITGGPWYT+ EFD+EF++ LS + ++K+Q+ PP L I ++ SG+SK++L+ EV+LI+ +L YD +E V+ + + P YK++ +N FT+ PCG C V + Sbjct: 501 PAKEITGGPWYTEHEFDHEFIEELSRAIYLFIKQQRKPPSLGIIVDYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGALPSSDGTPCYKISRQVTPLNHFTDFPCGRCPVQAQ 621
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN) HSP 1 Score: 101 bits (251), Expect = 1.610e-23 Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKV 351 P+ EITGGPWY +QEFD+ F+ LS++V +K LK I + SGISK+ L DE++ I+ TL+YDG +EEVR R A YK++ N +E PCG C V Sbjct: 153 PSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVRAV--RLTPGANHETKYKISQEISTFNALSETPCGVCPV 267
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A8J4FX84_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4FX84_9CHLO) HSP 1 Score: 97.8 bits (242), Expect = 2.700e-22 Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 360 P++E+TGG WYT+ +FD EF+ L SY++ Q+ L DIAA I+ G SK++L ++++ IV TLVYDG ++EV G N D P + P A + T+VPCG C V+ E Sbjct: 147 PSRELTGGAWYTENQFDSEFINVLREACYSYIQRQKDASLGDIAAFIRSRGFSKVELRIEDIHTIVMTLVYDGRIDEVEPEGEDDNEDHYR-PAVLVVPDATAL---TDVPCGVCPVAGE 262
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: K3X6G1_GLOUD (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6G1_GLOUD) HSP 1 Score: 97.1 bits (240), Expect = 6.280e-22 Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 360 P+ EITGGPWY +QEFD+ F+ LS++V +K T L I + SGISK+ L +E++ I+ TL+YDG +EEVR R YK++ N +E PCG C V + Sbjct: 150 PSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGTSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRTV--RLTPGVSHETKYKVSHDISTFNYLSETPCGVCPVFNQ 267
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC) HSP 1 Score: 95.1 bits (235), Expect = 2.920e-21 Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 360 P+++ITGGPWY +QEFD++F+ LS++V +++ + L+ I + SGI+K+ L DE+ IV TL+YD +EEVR A R YK+ V + +E PCG C V + Sbjct: 141 PSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVRTA--RLANGEMRDVSYKICRDVSVFDGLSEAPCGVCPVFEQ 258
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI) HSP 1 Score: 95.1 bits (235), Expect = 3.270e-21 Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKV 351 P+ EITGGPWY +QEFD+ F+ LS++V +K L I + SGISK+ L +E++ I+ TL+YDG +EEVR A YK++ N +E PCG C V Sbjct: 154 PSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSASHEVK--------YKVSQQITTFNYLSETPCGVCPV 262
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Match: A0A2J8A2J4_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A2J4_9CHLO) HSP 1 Score: 93.2 bits (230), Expect = 4.800e-21 Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 1 PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGAGSRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVSRE 360 P++E+TGG WYT+ +FD EF+ L SY+ Q L IA+ I+ G SK++L +++++ IV TLVYDG ++EV G N D P P + P T+VPCG C V E Sbjct: 84 PSRELTGGAWYTENQFDSEFINVLREACFSYIVRQGDASLGTIASFIRAKGFSKVELRIEDIQTIVMTLVYDGRVDEVEPEGDDDNEDHYR-PAVLCVPDS---TPLTDVPCGVCPVVGE 199 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18595.5432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18595.5432.1 >prot_L-elsbetiae_contig18595.5432.1 ID=prot_L-elsbetiae_contig18595.5432.1|Name=mRNA_L-elsbetiae_contig18595.5432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQQTPPLKDIAAAIKVSback to top mRNA from alignment at L-elsbetiae_contig18595:801..2918- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18595.5432.1 ID=mRNA_L-elsbetiae_contig18595.5432.1|Name=mRNA_L-elsbetiae_contig18595.5432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2118bp|location=Sequence derived from alignment at L-elsbetiae_contig18595:801..2918- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18595:801..2918- >mRNA_L-elsbetiae_contig18595.5432.1 ID=mRNA_L-elsbetiae_contig18595.5432.1|Name=mRNA_L-elsbetiae_contig18595.5432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig18595:801..2918- (Laminarionema elsbetiae ELsaHSoW15)back to top |