mRNA_L-elsbetiae_contig18589.5427.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18589.5427.1
Unique NamemRNA_L-elsbetiae_contig18589.5427.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18589.5427.1 vs. uniprot
Match: D7G2B9_ECTSI (Similar to dermatan 4-sulfotransferase-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B9_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.360e-67
Identity = 98/117 (83.76%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 KFKGAINDEPRKVFRDFMIGVRKDVRIRGCKVNSHWRPQYCFCSIARFRDSYRVIPFANMSSEAVNLVDHMRRPSPARADLLREFMVSRFSSNQDAKAQGATTKREKYFSREALDVI 351
            KF+ A+NDEPRKVFRDFM+GVR+DVR+ GCKVNSHWRPQ+CFCSIARFR+SY V+PFANMS+EAVNLVDHMRRPSP RA+LLREF+V RFSSNQDAKAQGAT+KRE+YFS+EALDVI
Sbjct:  123 KFRAAMNDEPRKVFRDFMLGVRRDVRLTGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSTEAVNLVDHMRRPSPDRAELLREFIVQRFSSNQDAKAQGATSKRERYFSQEALDVI 239
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BLAST of mRNA_L-elsbetiae_contig18589.5427.1 vs. uniprot
Match: A0A6H5JC58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC58_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.690e-30
Identity = 52/62 (83.87%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 KFKGAINDEPRKVFRDFMIGVRKDVRIRGCKVNSHWRPQYCFCSIARFRDSYRVIPFANMSS 186
            KF+ AINDEPRKVFRDFM+GV+KDVR+RGCKVNSHWRPQ+CFCSIARFR+SY V+PFANMS+
Sbjct:  288 KFRAAINDEPRKVFRDFMLGVQKDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSA 349
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18589.5427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2B9_ECTSI1.360e-6783.76Similar to dermatan 4-sulfotransferase-1 n=1 Tax=E... [more]
A0A6H5JC58_9PHAE2.690e-3083.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18589contigL-elsbetiae_contig18589:903..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue2e-53
Seed eggNOG ortholog2880.D7G2B9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2EWIE@1,2SYBY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCarbohydrate sulfotransferase-related
Ec32 orthologEc-16_001720.1
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.371913-CDS-L-elsbetiae_contig18589:902..10791622815774.371913-CDS-L-elsbetiae_contig18589:902..1079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18589 903..1079 -
1691683093.4974272-CDS-L-elsbetiae_contig18589:902..10791691683093.4974272-CDS-L-elsbetiae_contig18589:902..1079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18589 903..1079 -
1622815774.3821394-CDS-L-elsbetiae_contig18589:2799..29821622815774.3821394-CDS-L-elsbetiae_contig18589:2799..2982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18589 2800..2982 -
1691683093.5098484-CDS-L-elsbetiae_contig18589:2799..29821691683093.5098484-CDS-L-elsbetiae_contig18589:2799..2982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18589 2800..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18589.5427.1prot_L-elsbetiae_contig18589.5427.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18589 903..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18589.5427.1

>prot_L-elsbetiae_contig18589.5427.1 ID=prot_L-elsbetiae_contig18589.5427.1|Name=mRNA_L-elsbetiae_contig18589.5427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
KFKGAINDEPRKVFRDFMIGVRKDVRIRGCKVNSHWRPQYCFCSIARFRD
SYRVIPFANMSSEAVNLVDHMRRPSPARADLLREFMVSRFSSNQDAKAQG
ATTKREKYFSREALDVITTV
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mRNA from alignment at L-elsbetiae_contig18589:903..2982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18589.5427.1 ID=mRNA_L-elsbetiae_contig18589.5427.1|Name=mRNA_L-elsbetiae_contig18589.5427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2080bp|location=Sequence derived from alignment at L-elsbetiae_contig18589:903..2982- (Laminarionema elsbetiae ELsaHSoW15)
AAATTTAAGGGGGCGATCAACGACGAGCCGAGGAAGGTGTTCCGGGACTT
CATGATTGGGGTGCGCAAGGACGTCCGGATACGGGGGTGCAAGGTCAACT
CGCACTGGCGGCCGCAGTACTGCTTCTGCTCGATCGCCCGCTTCAGAGAT
TCCTACCGGGTCATCCCCTTCGCCAATATGTCTGTGAGTCGATGCCTTGG
ACGAGCGTGTGGGGGGCGCGACCAGCGAGCAGCCCTTGCAAAGCTTGTTG
GAGGTATTTGTGCATATAGGCTGATGTCGAGGTGGAGTGTGAGGAGAGCG
GTGGACAACCCTCGAAAAGCATGGGCTGGGGGGGTACTTGGGGTGCGATA
CGCCCACGGCGTGTACATAGCGCAGAGACAGGTGTTCTAGGTTGCCTGGT
CACCTGCATAATTACGTCTTGAATGCAACTTTTTACAGCATGATTGCATG
CGCGTGGTACATACAATACCTCGTTTGTTTTTGTTGTTTTTTCACATTTA
TTTCCAGTGCTCGATAGGCTCCTTTTGCCACGAGGGCACCTTGCCAGAGC
ACTGAACCGTGGTCACACACAAGGGTTCCTTTCCCCAAGGCCCCCACTCC
CCCCGTCTGCGGTGCTTGCCTAAATACATGAGTTTTTTTTTGTCGCGAGA
AGGGTTCAGCTATCCCTTTCCCTCGTCGACGGTGAGGTCGAACGTTTCGT
ATGTATGTACACATGAATTCCTGCGGAGGGAAGAGGTCGCGTGAACGAGG
GGGTTCTGCTGTTGAGTCACACACACATCCTGCTGTCTTTCTTTCACGCT
GCATCATGTTTAGCCCCCATATCGTGTGGAGGGGAGCGGAGGACTCCAGG
CTTTCCGTGTCTTGATCTTTTATGTTTATGTTTGGCTGACCCCTTCGGGT
CCGCTTTTCTATTTCGCAGCATACTAGTATACAGTATGTATAACATTTTC
AGGGTACATAAGTAAGTTAGCCTCGTTTGTGACCACGGCAATCGAACGCG
TCAAGCATTTTGGGCGCTTTAGTAGTGGCAGATGGGTGTACTGGAGACGA
GAGACCGCAACGGGTTTTGATGTGAAGACAACGACAGCATCACGGTGTTT
TCGAAAATATAACAGAGAATCAAGGAAAGGCCCTCCTCTACCGTAGGTGA
CACAAGATACCACACCCCTTGGACACATTTCCAAAGCTCGATTCCTCCCC
AGCAATAAGAGCGCCACTGCCGAAAGGGGTGGCGTTGGAAAGATTTAGGC
GAGGGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCGTTACG
GAGCAATGGAGCTCTAAAATTCGGCCCAGGGGGTGTGGTATCTTGTGTCA
CCTACGGTATGCAAGAAACCGCGGTCACTTTGTGGTGGTTGTTGTTGTTG
TTGTTGTTGTTTTTTTACATTAAAAACCGTTCCGATCTCTCCACCCAGTA
CCTCCCTATGGGCATACTGTTCCAACACCTGATGCGGTCAGTTCCCGTGG
TCACAAGGCTAACTTATACCTAAAAGGTATACGAAAATTAAATGTGGTGA
ATCAACAATTCCACACCTTTTTACGTTGTTGGGGTGTTGTTTCTTCACAT
TAGCTCGTACAGTCGAGATTGTTAATTCCAAAAATCTAGCAACTCACGGC
CCGTGGTCACAGAAGTGCTAAGAGCCATCAGAAGATCCGAAAAAGGACAT
ACGCAGATCCACCGGGCAAGGGTACCTACACAAAGTCGATGAGGTACACC
TATGAATATGCAGGTAAAAAACGTATACTTCGTATATGTGTAAGGATGTA
GGGATGTAGGATAATTTGGCCCGTCCGAGAACAGCACCTTAAAGTGTCTT
ATTTTTTCTCTCGCATCTATACATATATATCTTCTTTTTTTTTCGGTACA
AAGAGCGAGGCGGTTAATCTGGTGGACCACATGCGGCGGCCCTCGCCGGC
CCGAGCGGATCTTCTGCGCGAGTTCATGGTGAGCCGTTTCAGCAGCAACC
AGGACGCGAAGGCGCAGGGGGCCACGACCAAGCGGGAAAAGTACTTCTCC
AGGGAGGCGCTCGACGTCATAACGACGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18589:903..2982-

>mRNA_L-elsbetiae_contig18589.5427.1 ID=mRNA_L-elsbetiae_contig18589.5427.1|Name=mRNA_L-elsbetiae_contig18589.5427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig18589:903..2982- (Laminarionema elsbetiae ELsaHSoW15)
AAATTTAAGGGGGCGATCAACGACGAGCCGAGGAAGGTGTTCCGGGACTT
CATGATTGGGGTGCGCAAGGACGTCCGGATACGGGGGTGCAAGGTCAACT
CGCACTGGCGGCCGCAGTACTGCTTCTGCTCGATCGCCCGCTTCAGAGAT
TCCTACCGGGTCATCCCCTTCGCCAATATGTCTAAATTTAAGGGGGCGAT
CAACGACGAGCCGAGGAAGGTGTTCCGGGACTTCATGATTGGGGTGCGCA
AGGACGTCCGGATACGGGGGTGCAAGGTCAACTCGCACTGGCGGCCGCAG
TACTGCTTCTGCTCGATCGCCCGCTTCAGAGATTCCTACCGGGTCATCCC
CTTCGCCAATATGTCTAGCGAGGCGGTTAATCTGGTGGACCACATGCGGC
GGCCCTCGCCGGCCCGAGCGGATCTTCTGCGCGAGTTCATGGTGAGCCGT
TTCAGCAGCAACCAGGACGCGAAGGCGCAGGGGGCCACGACCAAGCGGGA
AAAGTACTTCTCCAGGGAGGCGCTCGACGTCATAACGACGGTAAGCGAGG
CGGTTAATCTGGTGGACCACATGCGGCGGCCCTCGCCGGCCCGAGCGGAT
CTTCTGCGCGAGTTCATGGTGAGCCGTTTCAGCAGCAACCAGGACGCGAA
GGCGCAGGGGGCCACGACCAAGCGGGAAAAGTACTTCTCCAGGGAGGCGC
TCGACGTCATAACGACGGTA
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