mRNA_L-elsbetiae_contig1858.5425.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1858.5425.1 vs. uniprot
Match: A0A6H5JUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH9_9PHAE) HSP 1 Score: 545 bits (1405), Expect = 1.070e-160 Identity = 613/1594 (38.46%), Postives = 755/1594 (47.37%), Query Frame = 1
Query: 163 KWHHKVTPSKRLKKHAQSGRLSERPVGETLNEAVDLVDASVAHQRRIRNLFSELETRQKTREEMDSDGEEEVHPVVQAAWQESRTQELRVSKKMTELTDDHECEDDILPVRTIQQIESYLLSSVAVLKSYMTTGVRVTATEILALMSQITFAAKTAEALSRWAGETLETLGSERNRAHALHRENAQVLREATMAQKGVLGLEAKLFHAGKEVESAKAYASRLKAESGDMRAVMSAIKDSVMVAGLPLVTHDENGELLGASQAAFSMIKELRETCVDQQDRIGR----------------------------------------------LEFFVEKGKLELEQAELTVKRMSQAATSKRARKRAAATAAAKAKHKGAYGTGSVXXXXXXXXXXXXXXXXSRSPTRSNLKAAAASLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSPRGAQRYGAASSTT--------------VDLDRAAVSVSASTAVESYDGATPNRSREGGGR--GRTATNANNFPGGSGH-----GRERGRTQAT------------------------EAERAEGTSATGGRGP--GEEGGSVVTSPRATGLVAADTAGGGDKDHRPALQQERTSNRFDADNQQDLLQQRQHDQVSPAVRSGSGESIEEQQQGEGGGEDGREGDATERTSGSGKKLLDEESPAEAMASGAATK---IVQDPPLGA--DQNYGTPEQQXXXXXXXLESPPDGRKTERATGGEESVHGQDGERGGTMGSKEEHG----GSISGRDLASVA----PPLNAGARRVEEQGGLEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVEKASRHASAAVKGLEYSLKKTLGAVPGVGAAAKEQLSAALRSQ------------VASLKDTIRKDMQEVAEEISASVATESLGTTTELAKREARITQLGSRIEDLQTRLKTINDAHAAEMKSLNE-LASEGRKRXXXXXXXXXXXXXXXXXXYQFLPLATSXXXXXXXXXXXXXXXXXXXXXXXXXXESSVTSALNGEGEHDFGXXXXXXXXXEEVAEGGRRATEHQEFGEHHPRYAGYPHQLYQHRDGSLPRGDLQHQHQTQQVGNTPERRRGRG-EGGVLTTRFGDAVGGRPRSDGILGSIQSSPPPARTPVDGGDGKDAHWEASKGIGTLRRGKSAGTFFLQQQLEQHXXXXXGRGSGRHEGGGSADDIARTSGAAGERGSKARSTGGRDSPPKEIGRSSVSEPSGRAP-NGDSYVTEPRTS----------AEDQQTVSVLTAATSLVQTSATGTAPPPPSGKQQRYPGEXXXXXXXXXXQRQRTDHEESSRAGGGERSTPPRCVSGQS--ISAMNAVGVAAGRAAERHASPTVPTSACLLSPKGRDGGSAHEAGHNYRGTTKSAGDMTAATNLAT----APXXXXXXXXXXXTSMKEMQGRARIQHAPKSMSDVVVTAAGESTTETPQTTPRGGKAGITAAA-RGSSGKTANPGAQGGG--------EAADAAAIERAGTGDESDGDGGDKKHQRQQIALRAFLQGADE 4506
+W HKVTPS+RLKKHAQ G L ERP+GETL +AV LVDASVAHQRRIRNLFSELE+R+KT E+ D++GE EV VVQ AW ESRTQE+RVSKKM EL DD +C++ I PVR IQQ+E+YLLS VAVLKSYMTTG R+T TEIL+LMSQ+TFAA TAEALSRWAGE +ETLG ER+RAH+LHRENAQV REAT+AQK ++ LEAK+FH KE+ESAKAYA+R+KAESGDMRAV AI DSV AGL L+THD +GE L A+QAAF MIK+LRETC+ QQD IGR LEFFV++GKL+LEQAE+T+K M + ++SKRA XXXXXXXXXXXXXXX SPT N KA+AAS+AV ++ A SS D D AVSVSA TAV+SY G GR GR ATN GGS GR R RTQA E R + ++ +GP GGSV + P A +G + P L++E + +N++ + D A ++ +EE++ E GE T+RTSG ++ EESP AS ATK + + A D+ XXXXXXX + GG +GE G +E G G ++G L A L G + E+Q P VE+A+R A A++ LE ++K LGA+PG+ AA+E LS ALR Q V LKDTI +D++EVAEE SA+ TES+ TELAKR+ARITQLGSRIEDLQTRL INDAH A ++ LNE A+E R Q PL XXXXXXXXXXX + T+ E D XXXXX + GR + ++ E RY L+ ++ G + D +H+H G EGG+ T +FG G G++G +QS PPP RTPVD G GKDAHWE S GIG LRRGKSAGTF QQQ QH RG G DSP ++ R PSGR +G + + R+S EDQQTVSVLTA TS Q+S G P G+QQR P + Q R G +R +P R + Q+ I V +G RHASP P S GG+ E + S+K+MQGRARIQH PK++ DVV+ AG E+P+ G AG A A RG GK A G G E A+ AG GDE+DG+ D+K QRQQ AL+AFL+G E
Sbjct: 13 RWQHKVTPSRRLKKHAQRGLLVERPIGETLTKAVGLVDASVAHQRRIRNLFSELESREKTLEQTDNNGEGEVPAVVQMAWHESRTQEIRVSKKMNELRDDADCDNAIAPVRAIQQLEAYLLSGVAVLKSYMTTGARITVTEILSLMSQVTFAAHTAEALSRWAGEAMETLGRERDRAHSLHRENAQVSREATLAQKEIMSLEAKIFHTRKELESAKAYAARIKAESGDMRAVFGAIDDSVTAAGLELITHDASGEPLSATQAAFGMIKKLRETCISQQDHIGRWERGKERRNGGGSVLGLRWDWRPPSAAKETPFQFLTNPRTQTRTRRLEFFVKRGKLDLEQAEMTIKDMGRDSSSKRAXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXRPPSPTHGN-KASAASIAVSTAMFMASSHSAARVPSGDTYSGTRAGSPSSSSYNTPTNDDDAATVTSTDAGQSITTXXXTATAADSSRAGMQASMRTPRAGAGADRDGTAVSVSACTAVDSYSNNNATDRVGGRGRRGGRRATNTETAIGGSDGSVPNLGRRR-RTQAXXXXXXXXXXXXXXXXXXXXATSRGERHRGSVSPSSAAKGPLGYSRGGSVSSPPTGRSRRAGGESGEARQQSPPPLREEESGTGEGEENEKXXSEPPAWDDAG-ATKTPEEVKVEEEEGEEEVGE-------TQRTSGI-QQPTGEESPGNEHASAVATKEAGVALPAVVSAREDRTXXXXXXXXXXXXXXXXXXXXXXXXXKDRGG-------NGEEGEDEAPREGKGCDAAGGVAGASLIMTAVMSPEALGEGEQEQEDQRA------------------EHDSSSSPASDADIRGGSLGEGAAGMVAPTVERANRRALEAMRVLEDAMKNRLGALPGLDPAAREHLSTALREQARDGFRGGGSECVLLLKDTIGRDVREVAEEASATAETESMRMMTELAKRDARITQLGSRIEDLQTRLVNINDAHEAGLEGLNEEAAAEARSARPGRREESESSPTV-----QQPPLNAQQXXXXXXXXXXXQLFFDSELELEPRGIADDTTT-----ELDEXXXXXXYQHGD-----GREGSARRQGWE--GRYRPERDALHNNQHGGVTSRD-EHRHXXXXXXXXXXXXXDGGPEGGIPTAQFGGGNVG-----GVIGDVQS-PPPTRTPVDSGHGKDAHWEGSTGIGLLRRGKSAGTFLAQQQ--QHSVSSPERGGGXXXXXXXXXXXXXXX------------XXXXDSPTRKTTRGLFRYPSGRVTESGGGHFGDNRSSNNLPGLGGRVEEDQQTVSVLTADTSFTQSSNIGVTTRP-LGQQQRDPRKGGRGGGRGQPQ--------GHRRGVDDRESPQRQENEQTGGIGVKGGDCVVSGCEGGRHASP--PAS----------GGNVSEXXXXXXXXXXXXXXXXXXXXXXSPDHLGEYGGGGGSLAPAASVKDMQGRARIQHMPKTVGDVVLAGAGGGVDESPEMAVIGAVAGKPAVAERGPLGKEAKHGGDEKGADGVRKEPEGAEGGGTGEAGAGDETDGEE-DRKRQRQQRALQAFLKGVSE 1507
BLAST of mRNA_L-elsbetiae_contig1858.5425.1 vs. uniprot
Match: D7G259_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G259_ECTSI) HSP 1 Score: 434 bits (1116), Expect = 2.680e-129 Identity = 232/315 (73.65%), Postives = 273/315 (86.67%), Query Frame = 1
Query: 163 KWHHKVTPSKRLKKHAQSGRLSERPVGETLNEAVDLVDASVAHQRRIRNLFSELETRQKTREEMDSDGEEEVHPVVQAAWQESRTQELRVSKKMTELTDDHECEDDILPVRTIQQIESYLLSSVAVLKSYMTTGVRVTATEILALMSQITFAAKTAEALSRWAGETLETLGSERNRAHALHRENAQVLREATMAQKGVLGLEAKLFHAGKEVESAKAYASRLKAESGDMRAVMSAIKDSVMVAGLPLVTHDENGELLGASQAAFSMIKELRETCVDQQDRIGRLEFFVEKGKLELEQAELTVKRMSQAATSKRAR 1107
+WHHKVTPS+RLKKHAQ G L ERP+GETL +AV LVDASVAHQRRI+NLFSELE+R++T E+MD++GEEEV VVQ AW ESRTQE+RVSKKM EL DD +C++ I PVR QQ+E+YLLS VAVLKSYMTTG R+TATEIL+LMSQ+TFAA TAEALSRWAGE +ETLG ER+RAHALHRENAQV REAT+AQK ++ LEAK+FH KE+ESAKAYA+R+KAESGDMR V AI DSV AGL L+THD +GE L A+QAAF MIK+LRETC+ QQD IGRLEFFVE+GKL+LEQAE+T+K M +A++SKRAR
Sbjct: 13 RWHHKVTPSRRLKKHAQRGLLVERPIGETLTKAVGLVDASVAHQRRIKNLFSELESRERTLEQMDNNGEEEVPAVVQMAWHESRTQEIRVSKKMNELRDDADCDNAIAPVRATQQLEAYLLSGVAVLKSYMTTGARITATEILSLMSQVTFAAHTAEALSRWAGEAMETLGRERDRAHALHRENAQVSREATLAQKEIMSLEAKIFHTRKELESAKAYAARIKAESGDMRVVFGAIDDSVTAAGLELMTHDASGEPLSATQAAFGMIKKLRETCISQQDHIGRLEFFVERGKLDLEQAEMTIKDMGRASSSKRAR 327
BLAST of mRNA_L-elsbetiae_contig1858.5425.1 vs. uniprot
Match: D7G258_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G258_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 3.870e-8 Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 4186 SMKEMQGRARIQHAPKSMSDVVVTAAGESTTETPQTTPRGGKAGITAAA-RGSSGKTAN-----PGAQG---GGEAADAAAIERAGTGDESDGDGGDKKHQRQQIALRAFLQGA 4500
S+K++QGRARIQH PK++ DVV+ AG E+P G AG A A RG+SGK A GA G E A+ AG GDE+DG+ D+K +RQQ AL+AFL+GA
Sbjct: 122 SVKDVQGRARIQHMPKTVGDVVLAVAGGGVDESPDMAVTGAVAGNPAVAERGASGKEARHSGDKKGADGVRRESEGAEGGGTGEAGAGDETDGEE-DRKRKRQQRALQAFLKGA 234 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1858.5425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1858.5425.1 >prot_L-elsbetiae_contig1858.5425.1 ID=prot_L-elsbetiae_contig1858.5425.1|Name=mRNA_L-elsbetiae_contig1858.5425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1808bp MPSSQFETAAQVAINVRKGLAPTKKAGVLYGGTAAHSDTPKSLKTALAVQback to top mRNA from alignment at L-elsbetiae_contig1858:438..14940- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1858.5425.1 ID=mRNA_L-elsbetiae_contig1858.5425.1|Name=mRNA_L-elsbetiae_contig1858.5425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=14503bp|location=Sequence derived from alignment at L-elsbetiae_contig1858:438..14940- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1858:438..14940- >mRNA_L-elsbetiae_contig1858.5425.1 ID=mRNA_L-elsbetiae_contig1858.5425.1|Name=mRNA_L-elsbetiae_contig1858.5425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=10848bp|location=Sequence derived from alignment at L-elsbetiae_contig1858:438..14940- (Laminarionema elsbetiae ELsaHSoW15)back to top |