mRNA_L-elsbetiae_contig1857.5421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1857.5421.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE) HSP 1 Score: 419 bits (1076), Expect = 1.100e-122 Identity = 292/529 (55.20%), Postives = 345/529 (65.22%), Query Frame = 3 Query: 9 LLETGLRKWR-RWTSSSPLWRRSARSLAAAALAFVERAALSRWRAAHAHLLTLK------AAKVARRSRLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK----LLLRRTFGAWSARAQRSRDIEAHRCRTLARRGLAGWRRAAQEAGRARGRSTAIAFFMSRAAGRRRLRAWLRRRRRRVDALRAADDHRALSGLSPSAVRWRRQRRRDERLRMEAALRSWRTGARQRXXXXXXXXXXXXXXXXXXXXXXVEAWEGWATRRRRWRGLLADARAVRARRLGGEGLRGLRDGTLGTRARREALRIADELWRRR-GATVFAALRNLVKSRRRLLRRASALRLRVAARAGLRRWRRIVQNTRVARDGRIKGESWRRRKAMRAGVCALSDGSGRRVAQDRAMCAGRLHFSRALASRAAASWRVWTRRQAAAAELYDAATALHRSRIASAGLRALDRVARARTTRREAAHTADRHRLRTRGLGRWRAAAALRAHERGQAITATVHWATTLSSKVLVSWAAA 1559 LL TGLR WR R ++S RR A SLA+AAL F +R AL+ WRAAHA LL+ AA++AR+S LL XXXXXXX + LLLRRTF AW ARA+ SR++ HR R L RRGLA W RAA+EAGRARG +TA+AFFMSRA RRLRAW+ RRRRR++A RAA+DHRA + ++P A RWRRQRRRD++LRMEAA SWR R R + AW + R RGLLA+A RARRL +GLRG++ G L RA R+A+ + DE WRRR A V A LRNL +SRRR++RRA+AL LRVAARAGL RWR+ ++ RVAR+ +KGE+WRR KA R GV LS GRR DRA+ LH SR LA RA A WR WTRR+AAAA+LY+ A+ALHRS I SAGLRALDRVARART+RREA A+RH LR GLGRWRAAAA R R +A ATVHWA TLSSKVL+SW AA Sbjct: 2110 LLHTGLRIWRTRAAATSAFRRRCAPSLASAALVFSKRTALAAWRAAHARLLSRNTAAXXTAARLARQSSLLLRRECRLRRVTSGGXXXXXXXAGPGKPSVALAIVAVRRWHRRSDASLLLRRTFWAWRARARDSREVGRHRRRALERRGLAAWCRAAREAGRARGCATAVAFFMSRAVAGRRLRAWVERRRRRLEATRAAEDHRARAAVNPGAARWRRQRRRDQQLRMEAAWSSWRETTRGRKMSRSARRAVVEAVESRLRSSAIGAWRDFVDGRLARRGLLAEAAQSRARRLKRKGLRGVKGGALDARAPRDAVWVGDEHWRRRRAAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARDWRVAREACVKGEAWRRDKARRDGVSVLSGRLGRRAKHDRAIRVSTLHLSRRLAGRAVAVWRGWTRRRAAAADLYEGASALHRSWILSAGLRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAA 2638
BLAST of mRNA_L-elsbetiae_contig1857.5421.1 vs. uniprot
Match: D7G051_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G051_ECTSI) HSP 1 Score: 337 bits (864), Expect = 3.890e-104 Identity = 218/411 (53.04%), Postives = 262/411 (63.75%), Query Frame = 3 Query: 444 AQEAGRARGRSTAIAFFMSRAAGRRRLRAWLRRRRRRVDALRAADDHRALSGLSPSAVRWRRQRRRDERLRMEAALRSWRTGARQRXXXXXXXXXXXXXXXXXXXXXXVEAWEGWATRRRRWRGLLADARAVRARRLGGEGLRGLRDGTLGTRARREALRIADELWRRRGATVFAA-LRNLVKSRRRLLRRASALRLRVAARAGLRRWRRIVQNTRVARDGRIKGESWRRRKAMRAGVCALSDGSGRRVAQDRAMCAGRLHFSRALASRAAASWRVWTRRQAAAAELYDAATALHRSRIASAGLRALDRVARARTTRREAAHTADRHRLRTRGLGRWRAAAALRAHERGQAITATVHWATTLSSKVLVSWAAAXXXXXXXXXXXXXXXXXXXXXXXXXGLRAWAAVVFGHP 1673 A++ GRARGR+ A+AFF+SRA R LRAW+ RRRRR++A RAA+DHRA + +SP A RWRRQRRRD++LRMEAA SWR R R + AW G+A R R RGLLA+A RARRL G+GLRGL+ G L RA R+A+ + DE WRRRGA + A LRNL +SRRR++RRA+AL LRVAARAGL RWR+ +++RVAR+ +KGE+WRR KA R GV LS G R Q A A+WR WTRR+AAAA+LY+ A+ALHRS + SAG+RALDRVARART+RREA A+RH LR GLGRWRAAAA R R +A ATVHWA TLSSKVL+SW AA LRAW A V P Sbjct: 2 ARDTGRARGRAAAVAFFLSRAVAGRWLRAWVERRRRRLEATRAAEDHRARAAVSPGAARWRRQRRRDQQLRMEAAWSSWRATTRGRRTSRSARRAVVEAVESRLRSGAIGAWRGFADGRLRRRGLLAEAAQSRARRLKGKGLRGLKGGALDARAPRDAVWVGDEHWRRRGAAIVVARLRNLTESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSMLSGRLGGRAEQKXXXXXXXXXXXXXXXXXAVAAWRGWTRRRAAAADLYEGASALHRSWVLSAGMRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAAALQQWAETRQEEAAARHERLAGKRRALRAWMARVRSRP 412 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1857.5421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1857.5421.1 >prot_L-elsbetiae_contig1857.5421.1 ID=prot_L-elsbetiae_contig1857.5421.1|Name=mRNA_L-elsbetiae_contig1857.5421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=474bp MSRAAGRRRLRAWLRRRRRRVDALRAADDHRALSGLSPSAVRWRRQRRRDback to top mRNA from alignment at L-elsbetiae_contig1857:227..5352+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1857.5421.1 ID=mRNA_L-elsbetiae_contig1857.5421.1|Name=mRNA_L-elsbetiae_contig1857.5421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5126bp|location=Sequence derived from alignment at L-elsbetiae_contig1857:227..5352+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1857:227..5352+ >mRNA_L-elsbetiae_contig1857.5421.1 ID=mRNA_L-elsbetiae_contig1857.5421.1|Name=mRNA_L-elsbetiae_contig1857.5421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2844bp|location=Sequence derived from alignment at L-elsbetiae_contig1857:227..5352+ (Laminarionema elsbetiae ELsaHSoW15)back to top |