mRNA_L-elsbetiae_contig1856.5419.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5419.1
Unique NamemRNA_L-elsbetiae_contig1856.5419.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5419.1 vs. uniprot
Match: B5LWD1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWD1_9PHYC)

HSP 1 Score: 224 bits (570), Expect = 4.050e-67
Identity = 122/297 (41.08%), Postives = 174/297 (58.59%), Query Frame = 1 
Query:    1 FIKKMQEWGNFPVDDHRYYLHMVFRYFFKQYHDHAVAAGHVIPHPSYQYILDTISPNGCANCFPPEFRRFLVDASRRSIATVSLPVPIKGNSQDVTYGSNFEAVPHVSALRRKIESTVLDWRNNQHEVYPFYLRVGNPYNKHIIDAECRARKVGVVTEGLRKLEGVDLSKMAAVAEARPKSLTMYDEYTRHVFKTHGEQLHERMGFFMLSVYRHVFFALQEFNVLEELFVATGAGMEVFVSFQSFCTQSTKSPGFERDESLCRALLMVIVDICFFFYVFDNRVLKEEDPVEIVDKVV 891
            FIK +  WGN  + D RYYLHMVFR++ K+YHD A   G V+ HPSYQ+ILD+I P+  A+ FPPEFRRFL D   RS     +P+P+K ++ +VTY  NFE    +S  R  I+  +  W + +  VYP YLR G+  +  I++    ARKV  V+ G++KL  V   K+  V    P S T ++EY +HVF   GEQL ER GFF    Y  +FFA+++  + E+LF AT   +  + +F++FCT+  +      DE+  R LLM +VD+ F    ++ R L   D   I+ + V
Sbjct:  101 FIKVLHSWGNCVIHDSRYYLHMVFRFYLKEYHDTARKLGLVLEHPSYQFILDSIYPSTSASKFPPEFRRFLRDNPPRS---PRVPLPLKRSATEVTYAENFEDRSEISTARASIQRIMHKWSSERRCVYPEYLRPGSSKSDFIVERVAYARKVDEVSSGMKKLSAVCTIKLDKVVSQCPISATAHEEYMKHVFVQSGEQLKERFGFFSRESYHEIFFAVKDHGIHEKLFSATSFDVGGYDNFKAFCTRKGR---LSNDEASVRKLLMTVVDVVFLLGCYNRRRLARADAGSIIREAV 391
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BLAST of mRNA_L-elsbetiae_contig1856.5419.1 vs. uniprot
Match: Q6XM02_9PHYC (FirrV-1-B34 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM02_9PHYC)

HSP 1 Score: 137 bits (344), Expect = 1.280e-33
Identity = 83/231 (35.93%), Postives = 121/231 (52.38%), Query Frame = 1 
Query:    1 FIKKMQEWGNFPVDDHRYYLHMVFRYFFKQYHDHAVAAGHVIPHPSYQYILDTISPNGCANCFPPEFRRFLVDASRRSIATVSLPVPIKGNSQDVTYGSNFEAVPHVSALRRKIESTVLDWRNNQHEVYPFYLRVGNPYNKHIIDAECRARKVGVVTEGLRKLEGVD---LSKMAAVAEARPKSLTMYDEYTRHVFKTHGEQLHERMGFFMLSVYRHVFFALQEFNVLEEL 684
            F   +Q+W   P DD +YYLHMVFR++ K YHD  V  G VI +PSYQ ILD + P+  A  FPPEFR F+ DA  RS+ T   P+P+KG+++ V+   NFEA+P V+  RR IE     W+      YP YL  G P   ++ +     RK+  V + + KL       L+K+  +    P    +Y +Y ++  +   E+   R    ML  +R  F   +E  +  +L
Sbjct:  109 FTTVLQKWATMPEDDPKYYLHMVFRFYMKDYHDFLVNKGQVIFYPSYQTILDILYPSDAAIAFPPEFRAFMKDAHSRSLETPYTPLPVKGDAKKVSLQYNFEALPDVATQRRYIERVFDIWKQTSFCTYPTYLCTGKPGCGYVENQFIYFRKIKRVKKEMEKLVNFPRETLAKLDTLVCKYPLVHEVYLDYAKNSSQFSSERKQFRR--IMLQKFRKHFVMCKELGIHSDL 337
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWD1_9PHYC4.050e-6741.08Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM02_9PHYC1.280e-3335.93FirrV-1-B34 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:22358..23275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size918
Cds size906
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.4836795-CDS-L-elsbetiae_contig1856:22357..232631622815773.4836795-CDS-L-elsbetiae_contig1856:22357..23263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 22358..23263 -
1691683092.8860908-CDS-L-elsbetiae_contig1856:22357..232631691683092.8860908-CDS-L-elsbetiae_contig1856:22357..23263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 22358..23263 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.5016222-UTR-L-elsbetiae_contig1856:23263..232751622815773.5016222-UTR-L-elsbetiae_contig1856:23263..23275Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 23264..23275 -
1691683092.8998458-UTR-L-elsbetiae_contig1856:23263..232751691683092.8998458-UTR-L-elsbetiae_contig1856:23263..23275Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 23264..23275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5419.1prot_L-elsbetiae_contig1856.5419.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 22358..23263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5419.1

>prot_L-elsbetiae_contig1856.5419.1 ID=prot_L-elsbetiae_contig1856.5419.1|Name=mRNA_L-elsbetiae_contig1856.5419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=302bp
MQEWGNFPVDDHRYYLHMVFRYFFKQYHDHAVAAGHVIPHPSYQYILDTI
SPNGCANCFPPEFRRFLVDASRRSIATVSLPVPIKGNSQDVTYGSNFEAV
PHVSALRRKIESTVLDWRNNQHEVYPFYLRVGNPYNKHIIDAECRARKVG
VVTEGLRKLEGVDLSKMAAVAEARPKSLTMYDEYTRHVFKTHGEQLHERM
GFFMLSVYRHVFFALQEFNVLEELFVATGAGMEVFVSFQSFCTQSTKSPG
FERDESLCRALLMVIVDICFFFYVFDNRVLKEEDPVEIVDKVVREMGQKG
T*
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mRNA from alignment at L-elsbetiae_contig1856:22358..23275-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5419.1 ID=mRNA_L-elsbetiae_contig1856.5419.1|Name=mRNA_L-elsbetiae_contig1856.5419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:22358..23275- (Laminarionema elsbetiae ELsaHSoW15)
TTTATAAAAAAGATGCAGGAATGGGGGAATTTTCCCGTCGACGACCACCG
GTACTACCTACACATGGTTTTCCGGTACTTCTTTAAGCAGTACCACGACC
ATGCCGTTGCCGCCGGACACGTAATACCTCACCCTTCTTACCAATATATA
CTCGACACAATCTCCCCGAATGGGTGCGCGAATTGTTTTCCACCTGAGTT
CAGGAGGTTTCTGGTGGACGCCTCTAGGCGGTCAATCGCGACTGTCAGCC
TCCCAGTACCCATTAAGGGGAACTCGCAGGACGTGACCTACGGTAGTAAT
TTTGAGGCCGTTCCTCATGTTTCGGCACTCCGAAGGAAGATAGAATCCAC
AGTCTTAGACTGGAGGAATAACCAGCACGAGGTTTACCCTTTTTATCTAC
GCGTGGGAAATCCCTATAACAAGCACATTATCGATGCGGAGTGTCGGGCA
AGAAAAGTGGGCGTCGTCACTGAAGGACTACGCAAGCTCGAAGGTGTCGA
CCTTTCGAAAATGGCAGCGGTGGCAGAAGCTCGCCCAAAATCCTTGACTA
TGTACGATGAATACACGAGACATGTCTTCAAAACTCATGGAGAGCAGCTT
CATGAAAGAATGGGATTCTTCATGTTGTCAGTGTATCGCCACGTGTTCTT
TGCTCTTCAAGAGTTCAACGTCCTTGAGGAACTGTTCGTGGCGACCGGGG
CCGGAATGGAGGTTTTTGTATCTTTCCAATCGTTTTGTACACAATCCACT
AAGAGTCCTGGCTTCGAAAGGGATGAATCTCTTTGTCGCGCGCTTCTAAT
GGTTATCGTAGATATATGTTTCTTTTTCTACGTTTTCGACAATCGCGTAC
TTAAGGAAGAAGACCCCGTCGAAATCGTAGATAAAGTTGTGCGGGAGATG
GGTCAAAAAGGTACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:22358..23275-

>mRNA_L-elsbetiae_contig1856.5419.1 ID=mRNA_L-elsbetiae_contig1856.5419.1|Name=mRNA_L-elsbetiae_contig1856.5419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1812bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:22358..23275- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGAATGGGGGAATTTTCCCGTCGACGACCACCGGTACTACCTACA
CATGGTTTTCCGGTACTTCTTTAAGCAGTACCACGACCATGCCGTTGCCG
CCGGACACGTAATACCTCACCCTTCTTACCAATATATACTCGACACAATC
TCCCCGAATGGGTGCGCGAATTGTTTTCCACCTGAGTTCAGGAGGTTTCT
GGTGGACGCCTCTAGGCGGTCAATCGCGACTGTCAGCCTCCCAGTACCCA
TTAAGGGGAACTCGCAGGACGTGACCTACGGTAGTAATTTTGAGGCCGTT
CCTCATGTTTCGGCACTCCGAAGGAAGATAGAATCCACAGTCTTAGACTG
GAGGAATAACCAGCACGAGGTTTACCCTTTTTATCTACGCGTGGGAAATC
CCTATAACAAGCACATTATCGATGCGGAGTGTCGGGCAAGAAAAGTGGGC
GTCGTCACTGAAGGACTACGCAAGCTCGAAGGTGTCGACCTTTCGAAAAT
GGCAGCGGTGGCAGAAGCTCGCCCAAAATCCTTGACTATGTACGATGAAT
ACACGAGACATGTCTTCAAAACTCATGGAGAGCAGCTTCATGAAAGAATG
GGATTCTTCATGTTGTCAGTGTATCGCCACGTGTTCTTTGCTCTTCAAGA
GTTCAACGTCCTTGAGGAACTGTTCGTGGCGACCGGGGCCGGAATGGAGG
TTTTTGTATCTTTCCAATCGTTTTGTACACAATCCACTAAGAGTCCTGGC
TTCGAAAGGGATGAATCTCTTTGTCGCGCGCTTCTAATGGTTATCGTAGA
TATATGTTTCTTTTTCTACGTTTTCGACAATCGCGTACTTAAGGAAGAAG
ACCCCGTCGAAATCGTAGATAAAGTTGTGCGGGAGATGGGTCAAAAAGGT
ACATGAATGCAGGAATGGGGGAATTTTCCCGTCGACGACCACCGGTACTA
CCTACACATGGTTTTCCGGTACTTCTTTAAGCAGTACCACGACCATGCCG
TTGCCGCCGGACACGTAATACCTCACCCTTCTTACCAATATATACTCGAC
ACAATCTCCCCGAATGGGTGCGCGAATTGTTTTCCACCTGAGTTCAGGAG
GTTTCTGGTGGACGCCTCTAGGCGGTCAATCGCGACTGTCAGCCTCCCAG
TACCCATTAAGGGGAACTCGCAGGACGTGACCTACGGTAGTAATTTTGAG
GCCGTTCCTCATGTTTCGGCACTCCGAAGGAAGATAGAATCCACAGTCTT
AGACTGGAGGAATAACCAGCACGAGGTTTACCCTTTTTATCTACGCGTGG
GAAATCCCTATAACAAGCACATTATCGATGCGGAGTGTCGGGCAAGAAAA
GTGGGCGTCGTCACTGAAGGACTACGCAAGCTCGAAGGTGTCGACCTTTC
GAAAATGGCAGCGGTGGCAGAAGCTCGCCCAAAATCCTTGACTATGTACG
ATGAATACACGAGACATGTCTTCAAAACTCATGGAGAGCAGCTTCATGAA
AGAATGGGATTCTTCATGTTGTCAGTGTATCGCCACGTGTTCTTTGCTCT
TCAAGAGTTCAACGTCCTTGAGGAACTGTTCGTGGCGACCGGGGCCGGAA
TGGAGGTTTTTGTATCTTTCCAATCGTTTTGTACACAATCCACTAAGAGT
CCTGGCTTCGAAAGGGATGAATCTCTTTGTCGCGCGCTTCTAATGGTTAT
CGTAGATATATGTTTCTTTTTCTACGTTTTCGACAATCGCGTACTTAAGG
AAGAAGACCCCGTCGAAATCGTAGATAAAGTTGTGCGGGAGATGGGTCAA
AAAGGTACATGA
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