mRNA_L-elsbetiae_contig1856.5412.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5412.1
Unique NamemRNA_L-elsbetiae_contig1856.5412.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5412.1 vs. uniprot
Match: B5LWB4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB4_9PHYC)

HSP 1 Score: 185 bits (470), Expect = 6.830e-55
Identity = 105/227 (46.26%), Postives = 137/227 (60.35%), Query Frame = 1 
Query:   37 FYKSLREENCVGQVSKLFDDLKNTERVSAFLTITA--QGNSVQAGPPGSHAPAEHMTHIHNHLDSSKIWKQILPWATEVEYTIPHPNGDITAFDTNSGGEAKVSRNSTIESFSATTTDAKDSTPWRIGFTRTLFEPTPKTDFNASRFSRVKIINTKRFFYETERSSWIFKLVVSWEGATKEEAKENGKTYSVFVET-NDTTKASIHPLHSTASFLEKVLDIVSLEGR 708
            FY S   ENCVG VSKLF  L   ++VSA L+      G  V  G          MT IH+HL SS+ WK++L W TEVEYTIPHP G++TA DT S GEAK+ R   + +  A   DA     W     R    P  K DFN +RFS VKI++TK F YET RS W FKL+V WEG +K+ A+++ K + V VE+  D  +  ++ +++ ASFLEK+LDIVSL+ +
Sbjct:    4 FYVSSENENCVGSVSKLFAALDREDKVSASLSERQCEDGEGVSMGS---------MTAIHHHLASSESWKEVLDWQTEVEYTIPHPAGEVTASDTASDGEAKIFREDRVSTLKALCGDA-----WGAKICRVKHTPVVKIDFNVTRFSSVKIMSTKSFVYETPRSCWRFKLIVFWEGESKDAAEKSPKKFRVLVESVRDKEQVGVNVMYTAASFLEKILDIVSLDSK 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWB4_9PHYC6.830e-5546.26Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:13933..14673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-98
Ec32 orthologEc-06_005830.1
Exons1
Model size741
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.1997182-UTR-L-elsbetiae_contig1856:13932..139471622815773.1997182-UTR-L-elsbetiae_contig1856:13932..13947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 13933..13947 +
1691683092.783129-UTR-L-elsbetiae_contig1856:13932..139471691683092.783129-UTR-L-elsbetiae_contig1856:13932..13947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 13933..13947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.2137127-CDS-L-elsbetiae_contig1856:13947..146731622815773.2137127-CDS-L-elsbetiae_contig1856:13947..14673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 13948..14673 +
1691683092.7945275-CDS-L-elsbetiae_contig1856:13947..146731691683092.7945275-CDS-L-elsbetiae_contig1856:13947..14673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 13948..14673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5412.1prot_L-elsbetiae_contig1856.5412.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 13948..14673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5412.1

>prot_L-elsbetiae_contig1856.5412.1 ID=prot_L-elsbetiae_contig1856.5412.1|Name=mRNA_L-elsbetiae_contig1856.5412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
MTCSSPNFYKSLREENCVGQVSKLFDDLKNTERVSAFLTITAQGNSVQAG
PPGSHAPAEHMTHIHNHLDSSKIWKQILPWATEVEYTIPHPNGDITAFDT
NSGGEAKVSRNSTIESFSATTTDAKDSTPWRIGFTRTLFEPTPKTDFNAS
RFSRVKIINTKRFFYETERSSWIFKLVVSWEGATKEEAKENGKTYSVFVE
TNDTTKASIHPLHSTASFLEKVLDIVSLEGRRQILDFKFEV*
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mRNA from alignment at L-elsbetiae_contig1856:13933..14673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5412.1 ID=mRNA_L-elsbetiae_contig1856.5412.1|Name=mRNA_L-elsbetiae_contig1856.5412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=741bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:13933..14673+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCAATCCCACCACATGACGTGTTCTTCGCCGAATTTCTACAAAAGTCT
TCGTGAGGAGAATTGTGTGGGGCAAGTGAGTAAGCTATTCGACGACTTGA
AGAATACGGAAAGGGTGTCTGCTTTTCTGACAATCACAGCACAAGGAAAT
TCTGTGCAAGCTGGACCACCCGGGAGCCATGCCCCCGCTGAGCACATGAC
CCATATACACAATCACCTTGACAGCTCCAAAATATGGAAGCAGATCCTGC
CCTGGGCGACGGAGGTGGAGTATACGATACCACACCCGAATGGTGACATC
ACAGCATTTGACACAAATTCCGGGGGAGAGGCGAAAGTTTCTAGAAATTC
TACAATTGAGTCTTTCTCCGCTACTACTACCGACGCCAAGGACTCTACTC
CTTGGAGAATCGGATTTACACGGACTCTCTTTGAACCTACTCCCAAGACG
GACTTCAATGCATCGAGATTCTCCCGAGTCAAGATCATAAATACTAAGAG
GTTTTTCTACGAAACGGAAAGATCTTCCTGGATTTTCAAGCTCGTCGTTT
CCTGGGAGGGTGCCACGAAAGAAGAGGCCAAAGAAAATGGAAAGACGTAC
AGTGTTTTTGTTGAGACGAATGACACTACAAAGGCTTCGATCCACCCATT
GCACAGCACTGCGTCCTTCTTGGAGAAGGTTCTGGATATCGTTTCTCTGG
AAGGTAGAAGGCAAATATTAGATTTTAAATTTGAAGTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:13933..14673+

>mRNA_L-elsbetiae_contig1856.5412.1 ID=mRNA_L-elsbetiae_contig1856.5412.1|Name=mRNA_L-elsbetiae_contig1856.5412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1452bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:13933..14673+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTGTTCTTCGCCGAATTTCTACAAAAGTCTTCGTGAGGAGAATTG
TGTGGGGCAAGTGAGTAAGCTATTCGACGACTTGAAGAATACGGAAAGGG
TGTCTGCTTTTCTGACAATCACAGCACAAGGAAATTCTGTGCAAGCTGGA
CCACCCGGGAGCCATGCCCCCGCTGAGCACATGACCCATATACACAATCA
CCTTGACAGCTCCAAAATATGGAAGCAGATCCTGCCCTGGGCGACGGAGG
TGGAGTATACGATACCACACCCGAATGGTGACATCACAGCATTTGACACA
AATTCCGGGGGAGAGGCGAAAGTTTCTAGAAATTCTACAATTGAGTCTTT
CTCCGCTACTACTACCGACGCCAAGGACTCTACTCCTTGGAGAATCGGAT
TTACACGGACTCTCTTTGAACCTACTCCCAAGACGGACTTCAATGCATCG
AGATTCTCCCGAGTCAAGATCATAAATACTAAGAGGTTTTTCTACGAAAC
GGAAAGATCTTCCTGGATTTTCAAGCTCGTCGTTTCCTGGGAGGGTGCCA
CGAAAGAAGAGGCCAAAGAAAATGGAAAGACGTACAGTGTTTTTGTTGAG
ACGAATGACACTACAAAGGCTTCGATCCACCCATTGCACAGCACTGCGTC
CTTCTTGGAGAAGGTTCTGGATATCGTTTCTCTGGAAGGTAGAAGGCAAA
TATTAGATTTTAAATTTGAAGTTTAAATGACGTGTTCTTCGCCGAATTTC
TACAAAAGTCTTCGTGAGGAGAATTGTGTGGGGCAAGTGAGTAAGCTATT
CGACGACTTGAAGAATACGGAAAGGGTGTCTGCTTTTCTGACAATCACAG
CACAAGGAAATTCTGTGCAAGCTGGACCACCCGGGAGCCATGCCCCCGCT
GAGCACATGACCCATATACACAATCACCTTGACAGCTCCAAAATATGGAA
GCAGATCCTGCCCTGGGCGACGGAGGTGGAGTATACGATACCACACCCGA
ATGGTGACATCACAGCATTTGACACAAATTCCGGGGGAGAGGCGAAAGTT
TCTAGAAATTCTACAATTGAGTCTTTCTCCGCTACTACTACCGACGCCAA
GGACTCTACTCCTTGGAGAATCGGATTTACACGGACTCTCTTTGAACCTA
CTCCCAAGACGGACTTCAATGCATCGAGATTCTCCCGAGTCAAGATCATA
AATACTAAGAGGTTTTTCTACGAAACGGAAAGATCTTCCTGGATTTTCAA
GCTCGTCGTTTCCTGGGAGGGTGCCACGAAAGAAGAGGCCAAAGAAAATG
GAAAGACGTACAGTGTTTTTGTTGAGACGAATGACACTACAAAGGCTTCG
ATCCACCCATTGCACAGCACTGCGTCCTTCTTGGAGAAGGTTCTGGATAT
CGTTTCTCTGGAAGGTAGAAGGCAAATATTAGATTTTAAATTTGAAGTTT
AA
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