mRNA_L-elsbetiae_contig1856.5411.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5411.1
Unique NamemRNA_L-elsbetiae_contig1856.5411.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:13523..13810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-146
Ec32 orthologEc-06_005410.1
Exons1
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.162172-CDS-L-elsbetiae_contig1856:13522..138101622815773.162172-CDS-L-elsbetiae_contig1856:13522..13810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 13523..13810 -
1691683092.77251-CDS-L-elsbetiae_contig1856:13522..138101691683092.77251-CDS-L-elsbetiae_contig1856:13522..13810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 13523..13810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5411.1prot_L-elsbetiae_contig1856.5411.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 13523..13810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5411.1

>prot_L-elsbetiae_contig1856.5411.1 ID=prot_L-elsbetiae_contig1856.5411.1|Name=mRNA_L-elsbetiae_contig1856.5411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MGVTVCDDFPQFEEWPDSKVYFLENMSLTSKNVLTERPTDVVITESMEIN
PNFKTHCEVCKERLVMYFHHEEEKWVFRDCRVLLDTVYHFPYCYEF
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mRNA from alignment at L-elsbetiae_contig1856:13523..13810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5411.1 ID=mRNA_L-elsbetiae_contig1856.5411.1|Name=mRNA_L-elsbetiae_contig1856.5411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:13523..13810- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGTGACCGTCTGCGACGACTTCCCACAATTCGAAGAGTGGCCGGA
TAGCAAAGTCTATTTCCTGGAAAATATGTCTTTGACATCAAAAAATGTTT
TGACAGAACGGCCGACTGACGTCGTCATCACCGAGAGTATGGAAATCAAC
CCAAATTTTAAGACCCATTGTGAAGTATGCAAGGAACGATTAGTCATGTA
CTTCCACCACGAGGAAGAGAAGTGGGTTTTCAGAGACTGCAGAGTCCTCC
TCGACACGGTGTACCACTTCCCTTATTGCTACGAGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:13523..13810-

>mRNA_L-elsbetiae_contig1856.5411.1 ID=mRNA_L-elsbetiae_contig1856.5411.1|Name=mRNA_L-elsbetiae_contig1856.5411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:13523..13810- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGTGACCGTCTGCGACGACTTCCCACAATTCGAAGAGTGGCCGGA
TAGCAAAGTCTATTTCCTGGAAAATATGTCTTTGACATCAAAAAATGTTT
TGACAGAACGGCCGACTGACGTCGTCATCACCGAGAGTATGGAAATCAAC
CCAAATTTTAAGACCCATTGTGAAGTATGCAAGGAACGATTAGTCATGTA
CTTCCACCACGAGGAAGAGAAGTGGGTTTTCAGAGACTGCAGAGTCCTCC
TCGACACGGTGTACCACTTCCCTTATTGCTACGAGTTTATGGGTGTGACC
GTCTGCGACGACTTCCCACAATTCGAAGAGTGGCCGGATAGCAAAGTCTA
TTTCCTGGAAAATATGTCTTTGACATCAAAAAATGTTTTGACAGAACGGC
CGACTGACGTCGTCATCACCGAGAGTATGGAAATCAACCCAAATTTTAAG
ACCCATTGTGAAGTATGCAAGGAACGATTAGTCATGTACTTCCACCACGA
GGAAGAGAAGTGGGTTTTCAGAGACTGCAGAGTCCTCCTCGACACGGTGT
ACCACTTCCCTTATTGCTACGAGTTT
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