mRNA_L-elsbetiae_contig1856.5408.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5408.1
Unique NamemRNA_L-elsbetiae_contig1856.5408.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5408.1 vs. uniprot
Match: B5LWB0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB0_9PHYC)

HSP 1 Score: 89.4 bits (220), Expect = 4.900e-22
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   16 GASGVSLLSGSGVVVGDSIVLVSGGRSWRIRLPSTKESAENVLVIEYRSGVVWRQAAIYIVPP 204
            G +GVSLLSGSG+VVG+SI L SGGRSWR+RLPS+ ES +N+LV EY+SG  W QAA++ +PP
Sbjct:    7 GNTGVSLLSGSGIVVGESITLFSGGRSWRLRLPSSSESEDNILVFEYKSGARWVQAAVFAIPP 69
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BLAST of mRNA_L-elsbetiae_contig1856.5408.1 vs. uniprot
Match: Q6XM23_9PHYC (FirrV-1-B13 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM23_9PHYC)

HSP 1 Score: 81.3 bits (199), Expect = 7.390e-19
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 MDGGS-GASGVSLLSGSGVVVGDSIVLVSGGRSWRIRLPSTKESAENVLVIEYRSGVVWRQAAIYIVP 201
            MDG S G +GVSLLSGSG++V  SI L SGGRSWR RLPS+ ES  N+LV+EY+ G  W QAA+Y VP
Sbjct:    1 MDGTSTGTAGVSLLSGSGLLVESSITLYSGGRSWRFRLPSSSESENNILVVEYKLGAQWVQAAVYRVP 68
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BLAST of mRNA_L-elsbetiae_contig1856.5408.1 vs. uniprot
Match: Q6XLU2_9PHYC (FirrV-1-I4 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU2_9PHYC)

HSP 1 Score: 76.3 bits (186), Expect = 7.080e-17
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   16 GASGVSLLSGSGVVVGDSIVLVSGGRSWRIRLPSTKESAENVLVIEYRSGVVWRQAAIYIV 198
            G +GVSLLSGS ++V  SI L SGGRSWR RLPS+ ES +N+LV+EY+SG  W QA +Y V
Sbjct:    7 GTAGVSLLSGSRLLVESSITLFSGGRSWRFRLPSSSESEKNILVVEYKSGARWVQAGVYAV 67
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BLAST of mRNA_L-elsbetiae_contig1856.5408.1 vs. uniprot
Match: Q8QNI2_ESV1K (EsV-1-95 n=2 Tax=root TaxID=1 RepID=Q8QNI2_ESV1K)

HSP 1 Score: 61.6 bits (148), Expect = 4.440e-11
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 MDGGSGAS-GVSLLSGSGVVVGDSIVLVSGGRSWRIRLPSTKESAENVLVIEYRSGVVWRQAAIYIV 198
            M+GGS    GV+L +G     GDS+ LVSGGR WR+R+PS +ES++N+L++E + G+ W  A  ++V
Sbjct:    1 MEGGSSNGFGVTLENGMSTTGGDSMTLVSGGRIWRLRVPSIQESSDNILILEVKHGITWYPAQQFVV 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
B5LWB0_9PHYC4.900e-2266.67Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM23_9PHYC7.390e-1964.71FirrV-1-B13 n=1 Tax=Feldmannia irregularis virus a... [more]
Q6XLU2_9PHYC7.080e-1762.30FirrV-1-I4 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q8QNI2_ESV1K4.440e-1146.27EsV-1-95 n=2 Tax=root TaxID=1 RepID=Q8QNI2_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:11416..11625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-95
Ec32 orthologEc-06_005860.1
Exons1
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.0479212-CDS-L-elsbetiae_contig1856:11415..116251622815773.0479212-CDS-L-elsbetiae_contig1856:11415..11625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 11416..11625 -
1691683092.7293363-CDS-L-elsbetiae_contig1856:11415..116251691683092.7293363-CDS-L-elsbetiae_contig1856:11415..11625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 11416..11625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5408.1prot_L-elsbetiae_contig1856.5408.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 11416..11625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5408.1

>prot_L-elsbetiae_contig1856.5408.1 ID=prot_L-elsbetiae_contig1856.5408.1|Name=mRNA_L-elsbetiae_contig1856.5408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MDGGSGASGVSLLSGSGVVVGDSIVLVSGGRSWRIRLPSTKESAENVLVI
EYRSGVVWRQAAIYIVPPA*
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mRNA from alignment at L-elsbetiae_contig1856:11416..11625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5408.1 ID=mRNA_L-elsbetiae_contig1856.5408.1|Name=mRNA_L-elsbetiae_contig1856.5408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:11416..11625- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGAGGGTCAGGGGCTTCAGGAGTTTCTCTTTTGTCCGGGTCCGG
TGTAGTTGTGGGAGATAGTATTGTCCTCGTTTCCGGGGGAAGGTCTTGGA
GGATAAGGTTACCATCCACAAAAGAATCCGCGGAGAATGTACTTGTTATT
GAATACAGGTCGGGAGTTGTGTGGAGGCAGGCGGCTATCTACATCGTGCC
ACCTGCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:11416..11625-

>mRNA_L-elsbetiae_contig1856.5408.1 ID=mRNA_L-elsbetiae_contig1856.5408.1|Name=mRNA_L-elsbetiae_contig1856.5408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:11416..11625- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGAGGGTCAGGGGCTTCAGGAGTTTCTCTTTTGTCCGGGTCCGG
TGTAGTTGTGGGAGATAGTATTGTCCTCGTTTCCGGGGGAAGGTCTTGGA
GGATAAGGTTACCATCCACAAAAGAATCCGCGGAGAATGTACTTGTTATT
GAATACAGGTCGGGAGTTGTGTGGAGGCAGGCGGCTATCTACATCGTGCC
ACCTGCCTGAATGGATGGAGGGTCAGGGGCTTCAGGAGTTTCTCTTTTGT
CCGGGTCCGGTGTAGTTGTGGGAGATAGTATTGTCCTCGTTTCCGGGGGA
AGGTCTTGGAGGATAAGGTTACCATCCACAAAAGAATCCGCGGAGAATGT
ACTTGTTATTGAATACAGGTCGGGAGTTGTGTGGAGGCAGGCGGCTATCT
ACATCGTGCCACCTGCCTGA
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