mRNA_L-elsbetiae_contig1856.5407.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5407.1
Unique NamemRNA_L-elsbetiae_contig1856.5407.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5407.1 vs. uniprot
Match: B5LWA9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA9_9PHYC)

HSP 1 Score: 110 bits (275), Expect = 4.430e-29
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:   16 LVLSKIPEVEREYIWDWCKSRHLDDIFPVVALTYWTRARVHIAIEFLVKPGMKDIYMVICIHIGLKWLGYDEAHRCNFFKDLTDINEHLHPETHRKMEMDLLKALDW 336
            + L  I   E++++W WC+ RHLDD++ V+ALT W R +  I + FL+    K  YMV C+HI LK+LGYDE  +C+F +D+  ++     E H+ +E+ +L+ LDW
Sbjct:    1 MKLLPIKHDEKDFVWTWCRERHLDDVYTVLALTIWIRVKPGITVFFLLDDRRKATYMVACVHIALKYLGYDELAKCDFLRDIRQVDPGASTEYHQNIEIQILEILDW 107
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BLAST of mRNA_L-elsbetiae_contig1856.5407.1 vs. uniprot
Match: Q6XLU3_9PHYC (FirrV-1-I3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU3_9PHYC)

HSP 1 Score: 106 bits (264), Expect = 2.530e-27
Identity = 42/100 (42.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   43 EREYIWDWCKSRHLDDIFPVVALTYWTRARVHIAI-EFLVKP-GMKDIYMVICIHIGLKWLGYDEAHRCNFFKDLTDINEHLHPETHRKMEMDLLKALDW 336
            ERE++W W ++R LDD++ V+A T W R +  +A+  F ++   +K++Y+++CIHI +K+LGYDE  RCNF  DL  ++  +   TH+++E ++L ALDW
Sbjct:   16 EREFMWTWTRTRSLDDVYAVLASTIWIRIKDQVALFSFSIRSDSVKEVYLIVCIHIAMKYLGYDEVFRCNFVHDLVQVSPTMDAHTHQRLEFEVLHALDW 115
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BLAST of mRNA_L-elsbetiae_contig1856.5407.1 vs. uniprot
Match: D8LPB1_ECTSI (EsV-1-79 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB1_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.620e-24
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:   13 DLVLSKIPEVEREYIWDWCKSRHLDDIFPVVALTYWTRARVHIAIEFLVKPGMKDIYMVICIHIGLKWLGYDEAHRCNFFKDLTDINEHLHPETHRKMEMDLLKALDWLM 342
            ++  S + + ER Y  +W   R+L   + V+ALTYW R R  I    LVK   K++YM++CIHI LKWLGYDE   CNF +DL ++   +  + H+++E  +L  L WL+
Sbjct:   39 EIAASPVTDEERAYFLEWVTKRNLSKQYFVLALTYWMRVRSKIWANMLVKEHRKELYMIVCIHIALKWLGYDEVLSCNFVQDLREVAA-VTMDVHQEIEFLVLSELGWLL 147
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BLAST of mRNA_L-elsbetiae_contig1856.5407.1 vs. uniprot
Match: Q8QNJ4_ESV1K (EsV-1-79 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ4_ESV1K)

HSP 1 Score: 97.8 bits (242), Expect = 9.720e-24
Identity = 43/110 (39.09%), Postives = 68/110 (61.82%), Query Frame = 1 
Query:   13 DLVLSKIPEVEREYIWDWCKSRHLDDIFPVVALTYWTRARVHIAIEFLVKPGMKDIYMVICIHIGLKWLGYDEAHRCNFFKDLTDINEHLHPETHRKMEMDLLKALDWLM 342
            ++V S + + ER Y  +W  +R+L   + V+ALTYW R R  I    L+K   K+ YM++CIH+ LKWLGYDE  +CNF +DL ++   +  + H+++E  +L  L W +
Sbjct:   36 EIVASPVTDKERAYFLEWVTARNLPKQYFVLALTYWMRVRSKIWANVLIKQHPKEFYMIVCIHVALKWLGYDEVLKCNFVQDLREVAA-VTMDVHQEIEFLVLTELGWFL 144
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BLAST of mRNA_L-elsbetiae_contig1856.5407.1 vs. uniprot
Match: Q6XM24_9PHYC (FirrV-1-B12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM24_9PHYC)

HSP 1 Score: 91.3 bits (225), Expect = 1.600e-21
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   22 LSKIPEVEREYIWDWCKSRHLDDIFPVVALTYWTRARVHIAIEFLVKPGMKDIYMVICIHIGLKWLGYDEAHRCNFFKDLTDINEHLHPETHRKMEMDLLKALDW 336
            +S +   ER + W W ++R+L+D++ V+ALT W RA+ ++     V    +++ M+ICIHI +K+LGYDE   C F  DL      +  + H ++E  +L+ALDW
Sbjct:    1 MSAVTPEERNFFWTWTRTRYLEDVYTVLALTIWIRAKRYVIELRRVHAVPREVCMIICIHISMKYLGYDELFACRFRDDLLPYYCTMTAKMHEQLEYKILRALDW 105
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B5LWA9_9PHYC4.430e-2941.12Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLU3_9PHYC2.530e-2742.00FirrV-1-I3 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPB1_ECTSI2.620e-2440.91EsV-1-79 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNJ4_ESV1K9.720e-2439.09EsV-1-79 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
Q6XM24_9PHYC1.600e-2137.14FirrV-1-B12 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:10923..11267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-79 cyclin-like
Ec32 orthologEc-06_006010.1
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.0067189-CDS-L-elsbetiae_contig1856:10922..112671622815773.0067189-CDS-L-elsbetiae_contig1856:10922..11267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 10923..11267 -
1691683092.7184505-CDS-L-elsbetiae_contig1856:10922..112671691683092.7184505-CDS-L-elsbetiae_contig1856:10922..11267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 10923..11267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5407.1prot_L-elsbetiae_contig1856.5407.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 10923..11267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5407.1

>prot_L-elsbetiae_contig1856.5407.1 ID=prot_L-elsbetiae_contig1856.5407.1|Name=mRNA_L-elsbetiae_contig1856.5407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MENKDLVLSKIPEVEREYIWDWCKSRHLDDIFPVVALTYWTRARVHIAIE
FLVKPGMKDIYMVICIHIGLKWLGYDEAHRCNFFKDLTDINEHLHPETHR
KMEMDLLKALDWLM*
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mRNA from alignment at L-elsbetiae_contig1856:10923..11267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5407.1 ID=mRNA_L-elsbetiae_contig1856.5407.1|Name=mRNA_L-elsbetiae_contig1856.5407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:10923..11267- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAATAAAGATTTAGTTCTGTCGAAGATACCAGAGGTTGAACGCGA
GTACATCTGGGATTGGTGTAAGTCACGACACCTGGACGACATCTTCCCCG
TTGTCGCACTGACGTATTGGACAAGGGCTAGGGTTCATATAGCAATAGAG
TTCCTCGTCAAACCGGGTATGAAGGACATCTACATGGTCATCTGTATCCA
CATCGGGCTAAAATGGTTAGGATACGACGAAGCGCACAGGTGCAACTTCT
TCAAAGACCTCACAGATATTAACGAGCACCTTCATCCCGAAACCCATAGA
AAGATGGAGATGGACTTACTTAAGGCACTGGACTGGTTAATGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:10923..11267-

>mRNA_L-elsbetiae_contig1856.5407.1 ID=mRNA_L-elsbetiae_contig1856.5407.1|Name=mRNA_L-elsbetiae_contig1856.5407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:10923..11267- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAATAAAGATTTAGTTCTGTCGAAGATACCAGAGGTTGAACGCGA
GTACATCTGGGATTGGTGTAAGTCACGACACCTGGACGACATCTTCCCCG
TTGTCGCACTGACGTATTGGACAAGGGCTAGGGTTCATATAGCAATAGAG
TTCCTCGTCAAACCGGGTATGAAGGACATCTACATGGTCATCTGTATCCA
CATCGGGCTAAAATGGTTAGGATACGACGAAGCGCACAGGTGCAACTTCT
TCAAAGACCTCACAGATATTAACGAGCACCTTCATCCCGAAACCCATAGA
AAGATGGAGATGGACTTACTTAAGGCACTGGACTGGTTAATGTAAATGGA
AAATAAAGATTTAGTTCTGTCGAAGATACCAGAGGTTGAACGCGAGTACA
TCTGGGATTGGTGTAAGTCACGACACCTGGACGACATCTTCCCCGTTGTC
GCACTGACGTATTGGACAAGGGCTAGGGTTCATATAGCAATAGAGTTCCT
CGTCAAACCGGGTATGAAGGACATCTACATGGTCATCTGTATCCACATCG
GGCTAAAATGGTTAGGATACGACGAAGCGCACAGGTGCAACTTCTTCAAA
GACCTCACAGATATTAACGAGCACCTTCATCCCGAAACCCATAGAAAGAT
GGAGATGGACTTACTTAAGGCACTGGACTGGTTAATGTAA
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