mRNA_L-elsbetiae_contig1856.5403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5403.1
Unique NamemRNA_L-elsbetiae_contig1856.5403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5403.1 vs. uniprot
Match: B5LWJ6_9PHYC (Putative cytidine deaminase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ6_9PHYC)

HSP 1 Score: 109 bits (273), Expect = 1.070e-28
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 MKRSHTHYINVCHALASKSHHPRFHHGSIALKRRGGGILGRGSNRKNLHAEVGSIIDIPNYQ---RYENLVVYVCRVNSKGGFMNSKPCENCVNFMKSNGVSTVYFSDEVGFSKL 336
            MK++H  + ++C  LA +S H  F HGSIA+   G  ++G+GSNR++LHAEV ++ D    +       L VYVCRV+S G FMNS+PC  C+ FM+  GVS VYFSD+ GF+K+
Sbjct:    1 MKKTHETHFDMCRNLAKRSQHSTFRHGSIAVS--GSSVVGKGSNRRSLHAEVSAVKDTVKKKIGKGTRRLKVYVCRVSSAGMFMNSRPCAKCMRFMRDAGVSKVYFSDQFGFAKI 113
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BLAST of mRNA_L-elsbetiae_contig1856.5403.1 vs. uniprot
Match: Q6XM58_9PHYC (FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM58_9PHYC)

HSP 1 Score: 102 bits (255), Expect = 5.590e-26
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   34 CHALASKSHHPRFHHGSIALKRRGGGILGRGSNRKNLHAEVGSIIDIPNYQRYENLVVYVCRVNSKGGFMNSKPCENCVNFMKSNGVSTVYFSDEVG-FSKL 336
            C  LA  S HP F HG++   R    I+G+GSNR +LHAEV ++ ++   Q +  L VYVCRVN++G FMNSKPC+NC+N+MK  GV  VY+SD+ G FSKL
Sbjct:   12 CQHLAKFSQHPVFRHGALVTNRTT--IVGKGSNRSSLHAEVSALQNVQGGQ-HMRLRVYVCRVNARGKFMNSKPCQNCMNYMKHRGVYRVYYSDDAGGFSKL 110
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BLAST of mRNA_L-elsbetiae_contig1856.5403.1 vs. uniprot
Match: A0A6C0JAJ1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JAJ1_9ZZZZ)

HSP 1 Score: 47.8 bits (112), Expect = 7.480e-5
Identity = 17/41 (41.46%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  205 VYVCRVNSKGGFMNSKPCENCVNFMK-SNGVSTVYFSDEVG 324
            +YVCR+N+K  F+NSKPC +C+ ++K +  +  +Y++D  G
Sbjct:   18 LYVCRINNKNEFINSKPCSDCIKYIKKTKNIKHIYYTDNDG 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B5LWJ6_9PHYC1.070e-2847.83Putative cytidine deaminase n=1 Tax=Feldmannia spe... [more]
Q6XM58_9PHYC5.590e-2652.94FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A6C0JAJ1_9ZZZZ7.480e-541.46Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:2772..3119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.8528988-CDS-L-elsbetiae_contig1856:2771..31191622815772.8528988-CDS-L-elsbetiae_contig1856:2771..3119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 2772..3119 +
1691683092.6455936-CDS-L-elsbetiae_contig1856:2771..31191691683092.6455936-CDS-L-elsbetiae_contig1856:2771..3119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 2772..3119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5403.1prot_L-elsbetiae_contig1856.5403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 2772..3119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5403.1

>prot_L-elsbetiae_contig1856.5403.1 ID=prot_L-elsbetiae_contig1856.5403.1|Name=mRNA_L-elsbetiae_contig1856.5403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MKRSHTHYINVCHALASKSHHPRFHHGSIALKRRGGGILGRGSNRKNLHA
EVGSIIDIPNYQRYENLVVYVCRVNSKGGFMNSKPCENCVNFMKSNGVST
VYFSDEVGFSKLKFF*
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mRNA from alignment at L-elsbetiae_contig1856:2772..3119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5403.1 ID=mRNA_L-elsbetiae_contig1856.5403.1|Name=mRNA_L-elsbetiae_contig1856.5403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:2772..3119+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACGTAGTCATACCCACTACATAAACGTATGCCACGCCCTCGCCTC
GAAGTCTCATCACCCGAGGTTCCACCATGGCTCCATTGCGCTGAAACGAA
GAGGGGGCGGTATTTTAGGAAGGGGGAGTAACCGAAAAAATTTGCACGCC
GAGGTCGGGTCGATTATTGATATACCAAATTACCAACGTTATGAAAATCT
TGTTGTCTATGTTTGTCGAGTCAATTCCAAAGGAGGGTTTATGAATTCCA
AACCATGTGAGAACTGTGTCAATTTCATGAAATCAAATGGTGTCAGCACG
GTGTACTTTTCGGATGAAGTCGGATTTAGTAAGCTTAAATTCTTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:2772..3119+

>mRNA_L-elsbetiae_contig1856.5403.1 ID=mRNA_L-elsbetiae_contig1856.5403.1|Name=mRNA_L-elsbetiae_contig1856.5403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:2772..3119+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACGTAGTCATACCCACTACATAAACGTATGCCACGCCCTCGCCTC
GAAGTCTCATCACCCGAGGTTCCACCATGGCTCCATTGCGCTGAAACGAA
GAGGGGGCGGTATTTTAGGAAGGGGGAGTAACCGAAAAAATTTGCACGCC
GAGGTCGGGTCGATTATTGATATACCAAATTACCAACGTTATGAAAATCT
TGTTGTCTATGTTTGTCGAGTCAATTCCAAAGGAGGGTTTATGAATTCCA
AACCATGTGAGAACTGTGTCAATTTCATGAAATCAAATGGTGTCAGCACG
GTGTACTTTTCGGATGAAGTCGGATTTAGTAAGCTTAAATTCTTTTAAAT
GAAACGTAGTCATACCCACTACATAAACGTATGCCACGCCCTCGCCTCGA
AGTCTCATCACCCGAGGTTCCACCATGGCTCCATTGCGCTGAAACGAAGA
GGGGGCGGTATTTTAGGAAGGGGGAGTAACCGAAAAAATTTGCACGCCGA
GGTCGGGTCGATTATTGATATACCAAATTACCAACGTTATGAAAATCTTG
TTGTCTATGTTTGTCGAGTCAATTCCAAAGGAGGGTTTATGAATTCCAAA
CCATGTGAGAACTGTGTCAATTTCATGAAATCAAATGGTGTCAGCACGGT
GTACTTTTCGGATGAAGTCGGATTTAGTAAGCTTAAATTCTTTTAA
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