prot_L-elsbetiae_contig18551.5399.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18551.5399.1
Unique Nameprot_L-elsbetiae_contig18551.5399.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length145
Homology
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BLAST of mRNA_L-elsbetiae_contig18551.5399.1 vs. uniprot
Match: D7G420_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G420_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.860e-21
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0 
Query:   96 LSRSLDKRMMPRTQQMRDKEIEPRFGLHKWVVSTYTDKQFTRWLEGRGT 144
            LSRSLDKRM+PR QQMR+K+IEPRFG HKWVVSTYTDKQFTRWLEGRGT
Sbjct:  350 LSRSLDKRMLPRAQQMREKDIEPRFGPHKWVVSTYTDKQFTRWLEGRGT 398
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BLAST of mRNA_L-elsbetiae_contig18551.5399.1 vs. uniprot
Match: D7G2F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.920e-5
Identity = 40/141 (28.37%), Postives = 58/141 (41.13%), Query Frame = 0 
Query:    4 LVTTYPAVLSRSVEKNLEPKFKWLEERLGATQEEVSTLIKRFPLIFGYSTTEASDHNSANASNLEPTVAFFTADLCGEQSEIRSAVMSCPSILSRSLDKRMMPRTQQMRDKEIEPRFGLHKWVVSTYTDKQFTRWLEGRGT 144
            ++  YP + + S+ KN+  K +WLEE L     EV  +  R P +  YS             NL PT+ FF  +L   + ++R AV                 R Q +R     P + LH  V+   +D  F RWL    T
Sbjct:  197 MLVRYPQLFNFSL-KNMAWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAER----------NLVPTLEFFLDELGATRQQVREAVXXXXXXXXXXXXXXXXXRLQIIRQAGFTPSWELHHRVMLFASDVVFGRWLREEPT 326
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18551.5399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G420_ECTSI3.860e-2189.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2F0_ECTSI3.920e-528.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 86..117
e-value: 5.2
score: 16.0
coord: 2..34
e-value: 7.4E-4
score: 28.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 2..56
e-value: 6.6E-8
score: 31.8
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 1..117
e-value: 2.1E-14
score: 55.3
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 3..137
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 3..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18551contigL-elsbetiae_contig18551:381..2083 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18551.5399.1mRNA_L-elsbetiae_contig18551.5399.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18551 381..2083 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18551.5399.1 ID=prot_L-elsbetiae_contig18551.5399.1|Name=mRNA_L-elsbetiae_contig18551.5399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
VEQLVTTYPAVLSRSVEKNLEPKFKWLEERLGATQEEVSTLIKRFPLIFG
YSTTEASDHNSANASNLEPTVAFFTADLCGEQSEIRSAVMSCPSILSRSL
DKRMMPRTQQMRDKEIEPRFGLHKWVVSTYTDKQFTRWLEGRGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf