mRNA_L-elsbetiae_contig18546.5396.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18546.5396.1
Unique NamemRNA_L-elsbetiae_contig18546.5396.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: D8LID9_ECTSI (Proteasome subunit alpha type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID9_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.030e-43
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK
Sbjct:   21 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 96
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BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: A0A4D9CTI6_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTI6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.150e-29
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYA+EAVKQG  +LGLRS   VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHK
Sbjct:   21 QVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHK 96
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BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: A0A7S0B0U3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0U3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.270e-29
Identity = 52/76 (68.42%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYAME+VKQG A +G+RS +H V+ ALKR+ +E+SA QKKI ++D++MG+ IAGLTADARSLAK+MR+ECLNHK
Sbjct:   11 QVEYAMESVKQGSACVGIRSSTHAVIGALKRSVSELSAHQKKILEIDTHMGIGIAGLTADARSLAKWMRSECLNHK 86
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BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: A0A067BZB1_SAPPC (Proteasome subunit alpha type n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BZB1_SAPPC)

HSP 1 Score: 112 bits (279), Expect = 7.900e-29
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSA-PQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            Q++YAMEAVKQG A LGLRS +HVVLA +KR   E  A PQKK+F++DS+MG+AIAGLTADARSLA++MRTECLNHK
Sbjct:   21 QIDYAMEAVKQGSACLGLRSSTHVVLAGIKRVNAEQLADPQKKLFEIDSHMGMAIAGLTADARSLARFMRTECLNHK 97
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BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: A0A7S2RLA4_9STRA (Proteasome subunit alpha type n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RLA4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.730e-29
Identity = 54/76 (71.05%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYA+E+VKQG  S+GLRS   VVLAALKR+ +E+S  QKK+FK+DS++G+A+AGLTADAR+LA YMRTECLNHK
Sbjct:   21 QVEYAIESVKQGSCSVGLRSKDFVVLAALKRSKDELSTYQKKLFKIDSHIGIAVAGLTADARTLATYMRTECLNHK 96
[Close]
BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: W7TFX4_9STRA (Proteasome subunit alpha n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFX4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.240e-28
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYA+EAVKQG  +LGLRS   VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHK
Sbjct:   21 QVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHK 96
[Close]
BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: L1JUV1_GUITC (Proteasome subunit alpha type n=4 Tax=Geminigeraceae TaxID=589343 RepID=L1JUV1_GUITC)

HSP 1 Score: 111 bits (278), Expect = 1.300e-28
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYAMEAVKQG A +G++S +H VL ALKR+ N+MS+ QKKIFK+D +MG+AI+GLTADARSL  YMRTECL HK
Sbjct:   21 QVEYAMEAVKQGSACVGVKSKTHAVLTALKRSTNDMSSYQKKIFKVDEHMGIAISGLTADARSLCMYMRTECLQHK 96
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BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: A0A7S2GC21_9STRA (Proteasome subunit alpha type n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC21_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.390e-28
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYA EAVKQG A+LGL S +HVVLAALKR+P+E+++ QKK+ K+D ++ V IAGL ADARSLAKYMRTECLNHK
Sbjct:   21 QVEYAGEAVKQGSATLGLTSNTHVVLAALKRSPHELASFQKKLLKIDDHIAVGIAGLNADARSLAKYMRTECLNHK 96
[Close]
BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: A0A836CE23_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE23_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.650e-28
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYAMEAVKQG A LGL S +H VL ALKR+PNE+ + Q+KI K+D +MG++IAGLTADAR LAKYMRTE LNHK
Sbjct:   21 QVEYAMEAVKQGSACLGLTSKTHAVLCALKRSPNELGSYQEKIMKIDDHMGISIAGLTADARMLAKYMRTEALNHK 96
[Close]
BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Match: A0A7S1T8X3_9CHLO (Proteasome subunit alpha type n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T8X3_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 2.190e-28
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 QVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHK 228
            QVEYAMEAVKQG A++ LRS +HVVLA LKRA +E+S+ QKKIFK+D +MGVAIAGLTAD R L++YMR EC+NH+
Sbjct:   21 QVEYAMEAVKQGSAAVALRSKTHVVLATLKRAASELSSYQKKIFKIDDHMGVAIAGLTADGRILSRYMRNECINHR 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18546.5396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LID9_ECTSI3.030e-43100.00Proteasome subunit alpha type n=2 Tax=Ectocarpus T... [more]
A0A4D9CTI6_9STRA2.150e-2975.00Proteasome subunit alpha type n=1 Tax=Nannochlorop... [more]
A0A7S0B0U3_9STRA3.270e-2968.42Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A067BZB1_SAPPC7.900e-2972.73Proteasome subunit alpha type n=3 Tax=Saprolegniac... [more]
A0A7S2RLA4_9STRA9.730e-2971.05Proteasome subunit alpha type n=1 Tax=labyrinthuli... [more]
W7TFX4_9STRA1.240e-2875.00Proteasome subunit alpha n=1 Tax=Nannochloropsis g... [more]
L1JUV1_GUITC1.300e-2871.05Proteasome subunit alpha type n=4 Tax=Geminigerace... [more]
A0A7S2GC21_9STRA1.390e-2872.37Proteasome subunit alpha type n=1 Tax=Florenciella... [more]
A0A836CE23_9STRA1.650e-2872.37Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A7S1T8X3_9CHLO2.190e-2871.05Proteasome subunit alpha type n=1 Tax=Tetraselmis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18546contigL-elsbetiae_contig18546:1957..2187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue4.9e-31
Seed eggNOG ortholog2880.D8LID9
Preferred namePSMA1
KEGG koko:K02725,ko:K13141
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000502,GO:0001530,GO:0001673,GO:0001703,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005839,GO:0005844,GO:0005856,GO:0005886,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0006997,GO:0007088,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007346,GO:0007349,GO:0007369,GO:0007370,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009506,GO:0009653,GO:0009790,GO:0009896,GO:0009987,GO:0010004,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030054,GO:0030071,GO:0030154,GO:0030163,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046685,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0080134,GO:0090068,GO:0097159,GO:0097367,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0863@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04147
Exons1
Model size231
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.321769-CDS-L-elsbetiae_contig18546:1956..21721622815772.321769-CDS-L-elsbetiae_contig18546:1956..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18546 1957..2172 -
1691683092.3175642-CDS-L-elsbetiae_contig18546:1956..21721691683092.3175642-CDS-L-elsbetiae_contig18546:1956..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18546 1957..2172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.3316903-UTR-L-elsbetiae_contig18546:2172..21871622815772.3316903-UTR-L-elsbetiae_contig18546:2172..2187Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18546 2173..2187 -
1691683092.3307846-UTR-L-elsbetiae_contig18546:2172..21871691683092.3307846-UTR-L-elsbetiae_contig18546:2172..2187Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18546 2173..2187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18546.5396.1prot_L-elsbetiae_contig18546.5396.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18546 1957..2172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18546.5396.1

>prot_L-elsbetiae_contig18546.5396.1 ID=prot_L-elsbetiae_contig18546.5396.1|Name=mRNA_L-elsbetiae_contig18546.5396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIA
GLTADARSLAKYMRTECLNHK*
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mRNA from alignment at L-elsbetiae_contig18546:1957..2187-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18546.5396.1 ID=mRNA_L-elsbetiae_contig18546.5396.1|Name=mRNA_L-elsbetiae_contig18546.5396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=231bp|location=Sequence derived from alignment at L-elsbetiae_contig18546:1957..2187- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTGAGTATGCGATGGAGGCGGTGAAGCAGGGGGGTGCGTCTTTGGG
GCTCCGCAGCGGTAGCCACGTTGTCCTGGCGGCCCTTAAGAGGGCGCCGA
ACGAGATGTCGGCGCCGCAAAAGAAAATCTTCAAGCTCGACAGCAACATG
GGCGTGGCCATCGCGGGGCTCACCGCGGACGCACGGTCTCTGGCCAAGTA
CATGCGGACGGAATGCCTCAACCACAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18546:1957..2187-

>mRNA_L-elsbetiae_contig18546.5396.1 ID=mRNA_L-elsbetiae_contig18546.5396.1|Name=mRNA_L-elsbetiae_contig18546.5396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig18546:1957..2187- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGCGGTGAAGCAGGGGGGTGCGTCTTTGGGGCTCCGCAGCGGTAG
CCACGTTGTCCTGGCGGCCCTTAAGAGGGCGCCGAACGAGATGTCGGCGC
CGCAAAAGAAAATCTTCAAGCTCGACAGCAACATGGGCGTGGCCATCGCG
GGGCTCACCGCGGACGCACGGTCTCTGGCCAAGTACATGCGGACGGAATG
CCTCAACCACAAGTGAATGGAGGCGGTGAAGCAGGGGGGTGCGTCTTTGG
GGCTCCGCAGCGGTAGCCACGTTGTCCTGGCGGCCCTTAAGAGGGCGCCG
AACGAGATGTCGGCGCCGCAAAAGAAAATCTTCAAGCTCGACAGCAACAT
GGGCGTGGCCATCGCGGGGCTCACCGCGGACGCACGGTCTCTGGCCAAGT
ACATGCGGACGGAATGCCTCAACCACAAGTGA
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