mRNA_L-elsbetiae_contig1853.5392.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1853.5392.1
Unique NamemRNA_L-elsbetiae_contig1853.5392.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1853.5392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1853contigL-elsbetiae_contig1853:18206..19074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size869
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1853.5392.1prot_L-elsbetiae_contig1853.5392.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1853 18316..18831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.9647434-UTR-L-elsbetiae_contig1853:18205..183151622815771.9647434-UTR-L-elsbetiae_contig1853:18205..18315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1853 18206..18315 +
1691683092.0828466-UTR-L-elsbetiae_contig1853:18205..183151691683092.0828466-UTR-L-elsbetiae_contig1853:18205..18315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1853 18206..18315 +
1622815771.988299-UTR-L-elsbetiae_contig1853:18831..190741622815771.988299-UTR-L-elsbetiae_contig1853:18831..19074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1853 18832..19074 +
1691683092.1040149-UTR-L-elsbetiae_contig1853:18831..190741691683092.1040149-UTR-L-elsbetiae_contig1853:18831..19074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1853 18832..19074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.9748936-CDS-L-elsbetiae_contig1853:18315..188311622815771.9748936-CDS-L-elsbetiae_contig1853:18315..18831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1853 18316..18831 +
1691683092.0943089-CDS-L-elsbetiae_contig1853:18315..188311691683092.0943089-CDS-L-elsbetiae_contig1853:18315..18831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1853 18316..18831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1853.5392.1

>prot_L-elsbetiae_contig1853.5392.1 ID=prot_L-elsbetiae_contig1853.5392.1|Name=mRNA_L-elsbetiae_contig1853.5392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MRQLGLRALLGLGERESDERACSMLKCDAVFGVNYGSWGIDFFFFFFLFF
WCACVSRASATRRVDMVMRFDITRLFMVCAGMEERCACYLFSCFGHDVFC
RRSCASVGANIIMFFLLLGAGKGAGLVGCFVNGCWCMCRASCLILSTRLQ
YVFLQPVTSPLRRNRRVFCSI*
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mRNA from alignment at L-elsbetiae_contig1853:18206..19074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1853.5392.1 ID=mRNA_L-elsbetiae_contig1853.5392.1|Name=mRNA_L-elsbetiae_contig1853.5392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=869bp|location=Sequence derived from alignment at L-elsbetiae_contig1853:18206..19074+ (Laminarionema elsbetiae ELsaHSoW15)
CTGATTGGCTGTCAAGATCTGTTTTTTTTTTTGCTTGAGGGTGCGCCCGT
CCAATATTTGTTGCACGTGTGAGCGTGGGGTGTCGTACATATGCTGCTCT
TGAGTGTGTGATGAGGCAGCTTGGCTTGCGTGCTCTGCTTGGTTTGGGTG
AGAGAGAGAGTGACGAGAGAGCTTGTTCGATGTTGAAGTGTGACGCGGTT
TTCGGTGTAAATTATGGAAGTTGGGGAATTGACTTTTTTTTCTTTTTTTT
TCTTTTTTTTTGGTGTGCTTGTGTTTCGCGGGCCTCGGCCACGCGGAGGG
TAGACATGGTCATGAGGTTTGACATCACGCGCTTGTTCATGGTGTGTGCT
GGAATGGAGGAGCGGTGTGCGTGTTATCTTTTTTCATGTTTTGGTCATGA
TGTGTTCTGCCGCCGTTCATGTGCTTCGGTGGGTGCTAATATTATTATGT
TTTTCTTGTTGTTGGGAGCAGGAAAAGGAGCTGGACTTGTTGGTTGTTTC
GTGAACGGTTGTTGGTGTATGTGCCGCGCAAGTTGTCTGATTTTGAGTAC
ACGTCTCCAGTATGTTTTTCTCCAGCCAGTGACGAGCCCGCTTCGTCGCA
ATAGGAGGGTTTTTTGTTCGATATAGGTACTTCGAAGCAAGAGAGAGATT
GGACTGGATCATGTTTTCGTCGTTTTGTGTGCTTTCGTGTACTAGGCGGT
GCGGTAGCGATGTGCTTCGGCCGGCCAACTCTTGTCCCGCGAGGTGAGGA
GTTTATTATTCAGCACCGCCGTTACACAGTACGTTGTAGTACAAGGCTAC
ATACTCATGGGCTGTGTGTGGGACGAAATAACAAATTCTAAAATCCTTTA
TGGGTTTTAGTCCTTCTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1853:18206..19074+

>mRNA_L-elsbetiae_contig1853.5392.1 ID=mRNA_L-elsbetiae_contig1853.5392.1|Name=mRNA_L-elsbetiae_contig1853.5392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig1853:18206..19074+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCAGCTTGGCTTGCGTGCTCTGCTTGGTTTGGGTGAGAGAGAGAG
TGACGAGAGAGCTTGTTCGATGTTGAAGTGTGACGCGGTTTTCGGTGTAA
ATTATGGAAGTTGGGGAATTGACTTTTTTTTCTTTTTTTTTCTTTTTTTT
TGGTGTGCTTGTGTTTCGCGGGCCTCGGCCACGCGGAGGGTAGACATGGT
CATGAGGTTTGACATCACGCGCTTGTTCATGGTGTGTGCTGGAATGGAGG
AGCGGTGTGCGTGTTATCTTTTTTCATGTTTTGGTCATGATGTGTTCTGC
CGCCGTTCATGTGCTTCGGTGGGTGCTAATATTATTATGTTTTTCTTGTT
GTTGGGAGCAGGAAAAGGAGCTGGACTTGTTGGTTGTTTCGTGAACGGTT
GTTGGTGTATGTGCCGCGCAAGTTGTCTGATTTTGAGTACACGTCTCCAG
TATGTTTTTCTCCAGCCAGTGACGAGCCCGCTTCGTCGCAATAGGAGGGT
TTTTTGTTCGATATAGATGAGGCAGCTTGGCTTGCGTGCTCTGCTTGGTT
TGGGTGAGAGAGAGAGTGACGAGAGAGCTTGTTCGATGTTGAAGTGTGAC
GCGGTTTTCGGTGTAAATTATGGAAGTTGGGGAATTGACTTTTTTTTCTT
TTTTTTTCTTTTTTTTTGGTGTGCTTGTGTTTCGCGGGCCTCGGCCACGC
GGAGGGTAGACATGGTCATGAGGTTTGACATCACGCGCTTGTTCATGGTG
TGTGCTGGAATGGAGGAGCGGTGTGCGTGTTATCTTTTTTCATGTTTTGG
TCATGATGTGTTCTGCCGCCGTTCATGTGCTTCGGTGGGTGCTAATATTA
TTATGTTTTTCTTGTTGTTGGGAGCAGGAAAAGGAGCTGGACTTGTTGGT
TGTTTCGTGAACGGTTGTTGGTGTATGTGCCGCGCAAGTTGTCTGATTTT
GAGTACACGTCTCCAGTATGTTTTTCTCCAGCCAGTGACGAGCCCGCTTC
GTCGCAATAGGAGGGTTTTTTGTTCGATATAG
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