mRNA_L-elsbetiae_contig1852.5388.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1852.5388.1
Unique NamemRNA_L-elsbetiae_contig1852.5388.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1852.5388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1852contigL-elsbetiae_contig1852:22122..22509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.594715-UTR-L-elsbetiae_contig1852:22121..221821622815771.594715-UTR-L-elsbetiae_contig1852:22121..22182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1852 22122..22182 +
1691683091.8610992-UTR-L-elsbetiae_contig1852:22121..221821691683091.8610992-UTR-L-elsbetiae_contig1852:22121..22182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1852 22122..22182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.6047199-CDS-L-elsbetiae_contig1852:22182..225091622815771.6047199-CDS-L-elsbetiae_contig1852:22182..22509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1852 22183..22509 +
1691683091.872966-CDS-L-elsbetiae_contig1852:22182..225091691683091.872966-CDS-L-elsbetiae_contig1852:22182..22509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1852 22183..22509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1852.5388.1prot_L-elsbetiae_contig1852.5388.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1852 22183..22509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1852.5388.1

>prot_L-elsbetiae_contig1852.5388.1 ID=prot_L-elsbetiae_contig1852.5388.1|Name=mRNA_L-elsbetiae_contig1852.5388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MFTPHLLNTTMYFSGMQPFEVASLIGDPSCLQHYRVLCGESGTPFSFPPQ
YRLFREQPSNSLSTYIPPDAPLAIQFPVPQRGPQKSPPLPPPNKRLRGSS
SADSWSHL*
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mRNA from alignment at L-elsbetiae_contig1852:22122..22509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1852.5388.1 ID=mRNA_L-elsbetiae_contig1852.5388.1|Name=mRNA_L-elsbetiae_contig1852.5388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=388bp|location=Sequence derived from alignment at L-elsbetiae_contig1852:22122..22509+ (Laminarionema elsbetiae ELsaHSoW15)
CATACGCATACTTGTGTGAGGAAAACCTACTACTGCTGCATACCGTACAA
TTATTGGAGACATGTTCACACCGCATCTATTGAATACAACGATGTATTTT
TCGGGTATGCAGCCGTTCGAAGTTGCCTCTCTGATTGGAGATCCATCGTG
TCTGCAACACTACAGAGTACTCTGTGGTGAAAGTGGCACTCCTTTCTCCT
TTCCCCCACAATACCGTCTTTTTCGGGAACAGCCGTCAAACTCTCTCTCT
ACATACATACCGCCCGATGCGCCTCTTGCCATCCAGTTTCCAGTTCCGCA
GCGGGGACCGCAAAAATCCCCCCCCCTCCCCCCCCCGAACAAACGCCTCC
GCGGCAGCAGCAGTGCGGATTCGTGGTCGCATTTATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1852:22122..22509+

>mRNA_L-elsbetiae_contig1852.5388.1 ID=mRNA_L-elsbetiae_contig1852.5388.1|Name=mRNA_L-elsbetiae_contig1852.5388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1852:22122..22509+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCACACCGCATCTATTGAATACAACGATGTATTTTTCGGGTATGCA
GCCGTTCGAAGTTGCCTCTCTGATTGGAGATCCATCGTGTCTGCAACACT
ACAGAGTACTCTGTGGTGAAAGTGGCACTCCTTTCTCCTTTCCCCCACAA
TACCGTCTTTTTCGGGAACAGCCGTCAAACTCTCTCTCTACATACATACC
GCCCGATGCGCCTCTTGCCATCCAGTTTCCAGTTCCGCAGCGGGGACCGC
AAAAATCCCCCCCCCTCCCCCCCCCGAACAAACGCCTCCGCGGCAGCAGC
AGTGCGGATTCGTGGTCGCATTTATAGATGTTCACACCGCATCTATTGAA
TACAACGATGTATTTTTCGGGTATGCAGCCGTTCGAAGTTGCCTCTCTGA
TTGGAGATCCATCGTGTCTGCAACACTACAGAGTACTCTGTGGTGAAAGT
GGCACTCCTTTCTCCTTTCCCCCACAATACCGTCTTTTTCGGGAACAGCC
GTCAAACTCTCTCTCTACATACATACCGCCCGATGCGCCTCTTGCCATCC
AGTTTCCAGTTCCGCAGCGGGGACCGCAAAAATCCCCCCCCCTCCCCCCC
CCGAACAAACGCCTCCGCGGCAGCAGCAGTGCGGATTCGTGGTCGCATTT
ATAG
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