prot_L-elsbetiae_contig18505.5382.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18505.5382.1
Unique Nameprot_L-elsbetiae_contig18505.5382.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length196
Homology
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BLAST of mRNA_L-elsbetiae_contig18505.5382.1 vs. uniprot
Match: D7G0M4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M4_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.880e-5
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 
Query:    1 PNVVTYNAAIQACGSAGRWHEALGLLRAMLAEKIA 35
            PNV T+NAA+QA GSAG W EAL LLR MLAEKIA
Sbjct:  518 PNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIA 552
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18505.5382.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0M4_ECTSI1.880e-577.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..112
e-value: 7.1E-27
score: 96.6
coord: 113..196
e-value: 3.7E-21
score: 77.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 1..48
e-value: 7.4E-10
score: 38.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 141..196
e-value: 3.4E-9
score: 36.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 77..102
e-value: 7.0E-6
score: 26.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 77..103
e-value: 1.7E-6
score: 25.8
coord: 4..38
e-value: 2.9E-8
score: 31.4
coord: 155..189
e-value: 2.2E-7
score: 28.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 11.772
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 2..36
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..72
score: 7.322
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 117..152
score: 5.371
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 74..104
score: 9.493
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..132
coord: 119..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18505contigL-elsbetiae_contig18505:580..1167 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18505.5382.1mRNA_L-elsbetiae_contig18505.5382.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18505 580..1167 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18505.5382.1 ID=prot_L-elsbetiae_contig18505.5382.1|Name=mRNA_L-elsbetiae_contig18505.5382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
PNVVTYNAAIQACGSAGRWHEALGLLRAMLAEKIAPNATSFTSAIAACGS
AGEWEQARRLLGAVKGAQGGTPLSVGCYNAAIRACGDAGRHEEAVEVLRE
MEADARGEGTGGTVAAPPPDATTYTAAIKASGAAHEQALLLLREMPARGL
APNRISYNAAIHACGRSGEWELAESLFAELAQLGLSPDVISYNSVI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat