mRNA_L-elsbetiae_contig1849.5373.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1849.5373.1
Unique NamemRNA_L-elsbetiae_contig1849.5373.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 9.640e-56
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 240
            MGGGRHFHFPKHVWSP+GGWW NP HWKRNTGFAFVGIGLAFIAIAR+SSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP
Sbjct:    1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 80
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: A0A835YUQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.540e-32
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 237
            MGGGR FH+PK+VWSP+GGWW  PT W+RNT  AF  I L  +A+  +S   ERRP+AP  HIPSQ WC HA+EDDPSL
Sbjct:    1 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 79
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: A0A1Z5JPC4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPC4_FISSO)

HSP 1 Score: 111 bits (277), Expect = 2.050e-30
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 237
            MGGG  ++ PK VWSP+GGWW NP +WKRNTG A   +G+  + + +VSS RERRPI P +HIPSQ WCKHA EDDP L
Sbjct:    1 MGGGGWYYVPK-VWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRL 78
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: A0A4D9DFY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFY8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.840e-30
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 237
            MGGGR F+FP H+W+PSGGW+ NP +W+ NT     GIG+A  +   +S+  ERRPIAPA+HIPSQ WCKHA EDD SL
Sbjct:    1 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWCKHAAEDDKSL 79
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: A0A1X7UGN9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGN9_AMPQE)

HSP 1 Score: 110 bits (275), Expect = 4.380e-30
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    4 GGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 237
            GG + F +PK+VWSPSGGWW NP HW+RNT    + + L+ I +A +S+  ERRP+AP  HIPSQRWCK+A+ DDPSL
Sbjct:    1 GGTKEFPYPKYVWSPSGGWWCNPRHWRRNTNIGLLIVVLSCIPVAYISAKLERRPVAPYRHIPSQRWCKYAETDDPSL 78
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: UPI001CF0F221 (uncharacterized protein LOC114956067 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F221)

HSP 1 Score: 105 bits (262), Expect = 5.270e-28
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 240
            MGG + F +PK+VWSP+GGWW NP +WKRNT  AF  I    I +  +S   ERR + P  HIPSQR+CKHAKEDDPSLP
Sbjct:    1 MGGVKKFDYPKYVWSPAGGWWCNPRNWKRNTAIAFGVIFAMCIPVHYISWSLERRYVPPYRHIPSQRFCKHAKEDDPSLP 80
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: A0A7S2BVW4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVW4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.320e-28
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 237
            +GGG H+H+P HVW+P+GGWW NP +WKRN G AF  +G +   I+ +S+  ERRP+ P  +IPSQ WCK+A  DDP L
Sbjct:   22 LGGGGHYHYPAHVWTPAGGWWVNPPNWKRNLGIAFGFLGFSLYNISSLSTKLERRPMPPKNYIPSQGWCKNAAADDPDL 100
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: A0A6S7H709_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H709_PARCT)

HSP 1 Score: 102 bits (255), Expect = 4.640e-27
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 237
            MGGG+ F +PK+VWSPSGGWW  P +W+RNT   F  I  A + I  +S   ERRP+AP  HI SQR+ KHAKEDDPSL
Sbjct:    1 MGGGKRFDYPKYVWSPSGGWWCEPRNWRRNTAIGFGMIFAACVPICWLSWQLERRPVAPYRHIFSQRFAKHAKEDDPSL 79
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BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: B8LDE7_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDE7_THAPS)

HSP 1 Score: 100 bits (248), Expect = 4.340e-26
Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:   25 FPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 237
            F K VWSP+GGWW  P  WKRNT      I +A   I +VS+++ERRPI P  HIPSQRWCKHAKEDDPSL
Sbjct:    1 FKKQVWSPAGGWWPTPVAWKRNTVACAFCICVASAMIFKVSAEKERRPIPPFKHIPSQRWCKHAKEDDPSL 71
[Close]
BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Match: A0A2B4SQG4_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SQG4_STYPI)

HSP 1 Score: 100 bits (248), Expect = 7.160e-26
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAF-VGIGLAFIAIARVSSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 240
            MGG + F +PK+VWSP+GGWW NP +WKRNT   F V +GL  I +A +S  RERR + P  HIPSQR+ ++AKEDDPSLP
Sbjct:    1 MGGVKKFDYPKYVWSPTGGWWCNPRNWKRNTAICFAVVLGLQ-IPVALLSWSRERRYVPPYRHIPSQRFARYAKEDDPSLP 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1849.5373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G068_ECTSI9.640e-5695.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUQ9_9STRA2.540e-3263.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5JPC4_FISSO2.050e-3062.03Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A4D9DFY8_9STRA2.840e-3060.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1X7UGN9_AMPQE4.380e-3058.97Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI001CF0F2215.270e-2860.00uncharacterized protein LOC114956067 n=1 Tax=Acrop... [more]
A0A7S2BVW4_9STRA5.320e-2854.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6S7H709_PARCT4.640e-2759.49Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
B8LDE7_THAPS4.340e-2663.38Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A2B4SQG4_STYPI7.160e-2659.26Uncharacterized protein n=1 Tax=Stylophora pistill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1849contigL-elsbetiae_contig1849:9981..11765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score114.4
Seed ortholog evalue2.5e-23
Seed eggNOG ortholog400682.PAC_15716111
Hectar predicted targeting categoryother localisation
EggNOG OGs2CGJ1@1,2S6YK@2759,3A92W@33154,3C3J4@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004010.1
Exons2
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.2796323-CDS-L-elsbetiae_contig1849:9980..100641622815770.2796323-CDS-L-elsbetiae_contig1849:9980..10064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 9981..10064 -
1691683090.956707-CDS-L-elsbetiae_contig1849:9980..100641691683090.956707-CDS-L-elsbetiae_contig1849:9980..10064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 9981..10064 -
1622815770.2897155-CDS-L-elsbetiae_contig1849:11606..117651622815770.2897155-CDS-L-elsbetiae_contig1849:11606..11765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 11607..11765 -
1691683090.9690158-CDS-L-elsbetiae_contig1849:11606..117651691683090.9690158-CDS-L-elsbetiae_contig1849:11606..11765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 11607..11765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1849.5373.1prot_L-elsbetiae_contig1849.5373.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1849 9981..11765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1849.5373.1

>prot_L-elsbetiae_contig1849.5373.1 ID=prot_L-elsbetiae_contig1849.5373.1|Name=mRNA_L-elsbetiae_contig1849.5373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MGGGRHFHFPKHVWSPSGGWWANPTHWKRNTGFAFVGIGLAFIAIARVSS
DRERRPIAPAFHIPSQRWCKHAKEDDPSLP*
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mRNA from alignment at L-elsbetiae_contig1849:9981..11765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1849.5373.1 ID=mRNA_L-elsbetiae_contig1849.5373.1|Name=mRNA_L-elsbetiae_contig1849.5373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1785bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:9981..11765- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGGGGGGCGACACTTCCACTTTCCGAAGCACGTGTGGTCGCCGTC
CGGAGGCTGGTGGGCGAACCCGACCCACTGGAAGCGCAACACGGGCTTCG
CGTTCGTCGGCATCGGCTTGGCGTTCATCGCGATCGCCAGGGTGTCCTCC
GACCGTGAGGTGAGAGCGGCGACGCGGAGGTATTGAGGCTGAGACAGGGA
GACAGAGACAGGCGGGGGGGCGTCGTTGCTGTGTGTTTTATGTAATATAC
TTTTCCAGAGGTGGTTTGTTTAGCACGCGTGAGTGCAACAAACACTCTGC
TTGCGTTTTTTTTTTAGCATATGAAGTATTTATCTGCGACAAAAGATTTT
TTTTTTGTTGGTGCATAAAAATATCCATCATCCCCTTCTTCACCAGCGCA
GCAGGATCTTGTGCTGTGGTGTCGTGCAAGGTGACTGGGGTGGGGCACAC
GAAAGGGGCCTCTTTCCTCGTTTTTTGTCTGTTTGCCGCCGGCTGTCGGC
GTGGGATGCCACTGCTACTGTCGGTGTCTTCCCCCGCAATCCATTAGTAT
TTTCGGGTCAGTTCTGCTCCTCCTCCTCAGATAAGTATGGGGGTGAAAAC
AGCAGTAGTCAGTGGCATCACCTTCCGCAGAGGTTTGGGTGTTGTTTGCC
ACTTCGTTGCGAGTTGGAAAGAAACAAGCGTGGCGTGCAAAACCTTAAAC
CTTTTGTTTTGAAAAACAGAACGGTTAACGCTTTGTTTCTTTCCCTATCC
GCGACGATTTTATCGGAGAAAAGTTGACTGAAAATAAACACCTACTTCGT
ATGTGGGACGGGTGGGCGGTGTCTCAAAAGAAAGAGACCTTCTTTTCGTC
TGGTTCTCCTGTCTCGGGTACGAGATAGAAAAAGTGAATGAGAGGCTCCA
CTGAACTCTCTCGTTTCTGGCTCTTTATTGTATGCGGAAGATGGGGAACG
TTCCTTTTCTCTCATCTCCGCTTTTTGTGATACTTACGGGAGGAGGGAGT
CAGGCAGTGAACACGCAAACCCCAAATGGACCGACCGTGTTCCTCAAGCG
CCACACACATGCTCTGCATTGTTGGTAGCCAAGTGTTGCCTGCATGTGTA
TGTACGCGTGCGTGTCCAGGGCACCTGGTCGGCGGAAGTCCGAGCGAAGG
AATCGGCTGTACACTCAGTTGACGCTCGTCCCGGATATCCACCCATCGGA
GATTTGGGTTGTCGTGAATGGTGGCCGAGTGAACGAAACACACATATATA
CATAAATGTGGCTCCAGGAAGACCCCTCTGGGTACTCAATACAAACGCGG
CAGCAGTAAAGAGATACTTCGTAGTGTATGGCTGGCTACGGGATATGTAC
CACGCCCTTCTCGTTGTCGTCCTACAACGCTGCCGTCCCACACGCCCCCG
CCTCTTCTTCTGCGTCATCGTCTATGTACAATTTCTGAGCCTGAGCTATC
GTAGACCGGACGGTTCCCCCCCGACCGGGCCTCACCGACCACGCGCCCCC
GCCCCCACCCCCCCCCACACGCCCCCCCCCCCCCCCCACCCGCCCCNNNN
NNNNNNCCATTTCCTCACCCGTGCCCTCTTGGCCCCGCCGGTTCCCCCCC
CCCGCCCCCCCCCCCCCCCCCCCCCCCCTTCCGCCACTCCTTCCCCTCAC
ATCCGCCCGCCCCCCCCCCGCCCCTTCTTCTGTGGTTTGGTGATTTCTCA
GCGTCGGCCGATCGCCCCGGCATTCCACATCCCTTCGCAGAGGTGGTGCA
AGCACGCGAAGGAGGACGACCCGTCGTTGCCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1849:9981..11765-

>mRNA_L-elsbetiae_contig1849.5373.1 ID=mRNA_L-elsbetiae_contig1849.5373.1|Name=mRNA_L-elsbetiae_contig1849.5373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:9981..11765- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGGGGGGCGACACTTCCACTTTCCGAAGCACGTGTGGTCGCCGTC
CGGAGGCTGGTGGGCGAACCCGACCCACTGGAAGCGCAACACGGGCTTCG
CGTTCGTCGGCATCGGCTTGGCGTTCATCGCGATCGCCAGGGTGTCCTCC
GACCGTGAGATGGGGGGGGGGCGACACTTCCACTTTCCGAAGCACGTGTG
GTCGCCGTCCGGAGGCTGGTGGGCGAACCCGACCCACTGGAAGCGCAACA
CGGGCTTCGCGTTCGTCGGCATCGGCTTGGCGTTCATCGCGATCGCCAGG
GTGTCCTCCGACCGTGAGCGTCGGCCGATCGCCCCGGCATTCCACATCCC
TTCGCAGAGGTGGTGCAAGCACGCGAAGGAGGACGACCCGTCGTTGCCGT
AGCGTCGGCCGATCGCCCCGGCATTCCACATCCCTTCGCAGAGGTGGTGC
AAGCACGCGAAGGAGGACGACCCGTCGTTGCCGTAG
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