mRNA_L-elsbetiae_contig1847.5368.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1847.5368.1
Unique NamemRNA_L-elsbetiae_contig1847.5368.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1847.5368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1847contigL-elsbetiae_contig1847:10678..11090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size415
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.956646-CDS-L-elsbetiae_contig1847:10677..109861622815769.956646-CDS-L-elsbetiae_contig1847:10677..10986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1847 10678..10986 +
1691683090.7824135-CDS-L-elsbetiae_contig1847:10677..109861691683090.7824135-CDS-L-elsbetiae_contig1847:10677..10986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1847 10678..10986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.9669862-UTR-L-elsbetiae_contig1847:10986..110901622815769.9669862-UTR-L-elsbetiae_contig1847:10986..11090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1847 10987..11090 +
1691683090.8060157-UTR-L-elsbetiae_contig1847:10986..110901691683090.8060157-UTR-L-elsbetiae_contig1847:10986..11090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1847 10987..11090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1847.5368.1prot_L-elsbetiae_contig1847.5368.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1847 10678..10986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1847.5368.1

>prot_L-elsbetiae_contig1847.5368.1 ID=prot_L-elsbetiae_contig1847.5368.1|Name=mRNA_L-elsbetiae_contig1847.5368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
LPIIGFCRLPLWPPSSTSTLARRPNRGHTWETAAAAVRLRVASERVVVFA
PWQLFGPLRCLLTDWTVQRWRNDGLRKSRRRWVGSIRGSQAVLLLSSRYI
RL*
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mRNA from alignment at L-elsbetiae_contig1847:10678..11090+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1847.5368.1 ID=mRNA_L-elsbetiae_contig1847.5368.1|Name=mRNA_L-elsbetiae_contig1847.5368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=413bp|location=Sequence derived from alignment at L-elsbetiae_contig1847:10678..11090+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCCATTATTGGATTTTGTCGTCTGCCCCTCTGGCCCCCATCCTCCAC
TTCTACTCTAGCTAGACGACCCAACCGGGGTCACACTTGGGAGACGGCGG
CGGCGGCGGTGCGACTGAGGGTGGCGAGCGAGAGAGTCGTGGTCTTCGCC
CCGTGGCAGCTGTTTGGTCCTCTGCGCTGCCTTCTTACGGACTGGACTGT
CCAGAGGTGGCGTAACGATGGCCTCCGCAAGTCTCGACGCCGGTGGGTGG
GGTCGATACGCGGATCACAGGCGGTGCTTCTTTTGTCATCGCGATACATT
AGACTCTAGAATCGTCCCGCTTTTATGTAGGGATTTAGAAAGAAACACCT
TTCATCGGTGGTTGCCTGCCTCTCTGTCCTGTGTGAGCCGCCCTCGCACC
CTGAATCAGTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1847:10678..11090+

>mRNA_L-elsbetiae_contig1847.5368.1 ID=mRNA_L-elsbetiae_contig1847.5368.1|Name=mRNA_L-elsbetiae_contig1847.5368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1847:10678..11090+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCCATTATTGGATTTTGTCGTCTGCCCCTCTGGCCCCCATCCTCCAC
TTCTACTCTAGCTAGACGACCCAACCGGGGTCACACTTGGGAGACGGCGG
CGGCGGCGGTGCGACTGAGGGTGGCGAGCGAGAGAGTCGTGGTCTTCGCC
CCGTGGCAGCTGTTTGGTCCTCTGCGCTGCCTTCTTACGGACTGGACTGT
CCAGAGGTGGCGTAACGATGGCCTCCGCAAGTCTCGACGCCGGTGGGTGG
GGTCGATACGCGGATCACAGGCGGTGCTTCTTTTGTCATCGCGATACATT
AGACTCTAGCTGCCCATTATTGGATTTTGTCGTCTGCCCCTCTGGCCCCC
ATCCTCCACTTCTACTCTAGCTAGACGACCCAACCGGGGTCACACTTGGG
AGACGGCGGCGGCGGCGGTGCGACTGAGGGTGGCGAGCGAGAGAGTCGTG
GTCTTCGCCCCGTGGCAGCTGTTTGGTCCTCTGCGCTGCCTTCTTACGGA
CTGGACTGTCCAGAGGTGGCGTAACGATGGCCTCCGCAAGTCTCGACGCC
GGTGGGTGGGGTCGATACGCGGATCACAGGCGGTGCTTCTTTTGTCATCG
CGATACATTAGACTCTAG
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