mRNA_L-elsbetiae_contig1846.5365.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1846.5365.1
Unique NamemRNA_L-elsbetiae_contig1846.5365.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.610e-59
Identity = 154/225 (68.44%), Postives = 169/225 (75.11%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNVIPAGLKIDPEGACFVAGSDMDQLGPEAILC 1282
            GFDPHDDSDNLRIHNNIV+                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       GDYS N CTDNKYG RWSVGASHNKIYDNE+Y+    GIYMY GSD         Y + GLPS+NIIANN++DTATEGIK+GDTVGNEFTGNV  NT  LRFR+S + IWKDN IPAG+ ID EG+CF + SD+ QLG EAI+C
Sbjct:  282 GFDPHDDSDNLRIHNNIVWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIFESMEGDYSNNKCTDNKYGFRWSVGASHNKIYDNEVYDSQQYGIYMYEGSD-------LPYVSDGLPSYNIIANNIIDTATEGIKMGDTVGNEFTGNVITNTADLRFRNSSEVIWKDNDIPAGVDIDSEGSCFTSDSDIVQLGEEAIVC 499
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.670e-34
Identity = 112/221 (50.68%), Postives = 141/221 (63.80%), Query Frame = 2 
Query:  599 QRAGFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNVIPAGLKIDPEGACFVAGSDMDQL 1261
            Q+ GFDPHDDSDNLRIHNNIVY NGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                + S N CT N+ GIR S+G+S+NKI+DN++ +     I+MYLGSD        +  T G+ + N+  NN ++ +  G+ + +T      GN F +TD   ++DS   +W+DN I     +     C  + SD DQ+
Sbjct:  136 QQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTQNEEGIRLSMGSSYNKIFDNQVIDTAGRSIWMYLGSDEV----EASAATDGMCTGNLFQNNYLEGSETGVAMTETRDTMLIGNTFIDTDNNEWKDSDGLVWRDNNIDGDFDMRFSDTCVTSESDFDQI 352
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BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.860e-32
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 2 
Query:  962 GIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNVIPAGLKIDPEGACFVAGSDMDQLGPEAILC 1282
            GIYMY GSD         Y + GLPS+N+IANN++DTATEGIK+G+TVGNEF GNV  NT  LRFR+S   IWKDN IP G+ IDPEG+CF + SD+ QLG EAI+C
Sbjct:  291 GIYMYEGSD-------LPYVSDGLPSYNLIANNIIDTATEGIKMGNTVGNEFMGNVITNTADLRFRNSSGVIWKDNDIPVGVDIDPEGSCFTSDSDIAQLGEEAIVC 390
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.100e-29
Identity = 107/218 (49.08%), Postives = 133/218 (61.01%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNVIPAGLKIDPEGACFVAGSDMDQL 1261
            GFDPHDDSDNLRIHNNIVY NGNHGIIASKRC    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 + S N CTDN+ GIR S+G+S+NKI+DN++ +     +++YLGSD        +  T G+ + N+  NN +D A+ G+K  +T  N   GN     +     DS   +W DN +    +I  E  C  + SD DQ+
Sbjct:  278 GFDPHDDSDNLRIHNNIVYENGNHGIIASKRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGSGSACIAIFESFGIEISDNVCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRSLWLYLGSDEI----IASAATDGMCTGNLFQNNYLDGASIGVKFSETRDNMLIGNTMVGVEESLIDDSDGLLWSDNEVEDDFEIGIETTCLSSESDFDQI 491
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.110e-23
Identity = 88/220 (40.00%), Postives = 106/220 (48.18%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GDYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDN--VIPAGLKIDPEGACFVAGSDMD 1255
            GFDPHDDSD L IH+N VY NGNHGIIASKRCN   XXXXXXXX                       XX               D S N   DNKYG+R SVG + N    N I +     +Y Y GSD   V ++      G    NI ++N +    E IK+    G EF  N F++  T+RF D+  TI   N  +  A LK+  +GACF   SD D
Sbjct:  108 GFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDS------GRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLGSATLKVS-KGACFDKKSDSD 320
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.210e-22
Identity = 111/213 (52.11%), Postives = 128/213 (60.09%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNVIPAGLKIDPEGACFVAGS 1246
            GFDPHDDSD+L I  N VYGNGNHGIIASKRCN+V   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        +   N   + KYGIR S+G++ N I+DN   +    G+Y Y GSD   V  N      G    N    N +      +KI +   N FT NVF N  T  F DS  T+W +N I  G  +D E   F +GS
Sbjct:  636 GFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGND-----GRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFEDSTDTVWTNNDIGGGC-LD-ESTDFASGS 841
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.330e-21
Identity = 72/198 (36.36%), Postives = 89/198 (44.95%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYS--GNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATE--GIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDN 1189
            GFDPHDDSD+L I NNIVYGNGNHGIIASKRCN+V                                               D +   N  T+ +YGIR S+G+  N I +N        G+Y Y+GSD   VP +      G PS N+   N ++T  +  G+ I +   N F  NVF    T  F DS  T W DN
Sbjct:  420 GFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSN-----GRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDN 612
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.790e-21
Identity = 75/216 (34.72%), Postives = 94/216 (43.52%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYS--GNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNVIPAGLKIDPEGACFVAGSD 1249
            GFDPHDDSD L I  N VY N NHGIIASKRCN+V                                               D    GN     KYGIR S+G+ +N++Y N   +    G+Y Y GSD   V +       G PS N++A NLV+    G+KI +   NEF  N F N D   F +S  T+W  N I  G   + +     +GSD
Sbjct:  672 GFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVSD-------GRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDGCIEEDDEFDAASGSD 880
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.430e-21
Identity = 92/220 (41.82%), Postives = 111/220 (50.45%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GDYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNVIPAGLKIDP----EGACFVAGSD 1249
            GFDPHDDSD L IH+N VY NG HGIIASKRCN VS                    XXXXXXXXXXXXXXXX            D S N   +NKYGIR+SVG+  N  ++N I        Y YLGSD   V ++      G    N+   N +    E IK+ D  G +F  N F +  T+RF D+ +T+   N+   GL +       GA F A SD
Sbjct:  282 GFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDS------GRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNI---GLNMSKLKVVNGASFDASSD 492
[Close]
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.940e-20
Identity = 71/213 (33.33%), Postives = 93/213 (43.66%), Query Frame = 2 
Query:  608 GFDPHDDSDNLRIHNNIVYGNGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--DYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNXXXXGIYMYLGSDPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFRNTDTLRFRDSPQTIWKDNV-IPAGLKID-PEGACF 1234
            G+DPHDDSD L IH+N+VY N  HGIIASKRCN+VS                                                + SGN    NKYGIR SVG   N +Y+N + N     IY Y GSDPA V         G    NI  +N V    + IK+ ++ G   T NVF     + F ++ + +   NV +    +++  E ACF
Sbjct:   74 GYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAEVQPT------GRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGVVEFSNTTENVVTGNVGLEDATEVELVEPACF 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1846.5365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9I9_9PHAE1.610e-5968.44MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G1G2_ECTSI1.670e-3450.68Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LKL1_ECTSI2.860e-3262.62Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G1_ECTSI1.100e-2949.08Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ9_9PHAE3.110e-2340.00Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D7FWE8_ECTSI3.210e-2252.11Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G8D9_ECTSI1.330e-2136.36Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LC73_ECTSI1.790e-2134.72Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
Q7XAJ7_9PHAE4.430e-2141.82Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
A0A6H5K1D5_9PHAE7.940e-2033.33MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1846contigL-elsbetiae_contig1846:14791..19987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue5.4e-22
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 orthologEc-16_003370.1
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionmannuronan C-5 epimerase C-terminal fragment
Ec32 orthologEc-16_003370.2
Exons7
Model size2433
Cds size1050
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.6468828-UTR-L-elsbetiae_contig1846:14790..150251622815769.6468828-UTR-L-elsbetiae_contig1846:14790..15025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1846 14791..15025 +
1691683090.5558915-UTR-L-elsbetiae_contig1846:14790..150251691683090.5558915-UTR-L-elsbetiae_contig1846:14790..15025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1846 14791..15025 +
1622815769.7414267-UTR-L-elsbetiae_contig1846:18839..199871622815769.7414267-UTR-L-elsbetiae_contig1846:18839..19987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1846 18840..19987 +
1691683090.6440566-UTR-L-elsbetiae_contig1846:18839..199871691683090.6440566-UTR-L-elsbetiae_contig1846:18839..19987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1846 18840..19987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.6592226-CDS-L-elsbetiae_contig1846:15025..154321622815769.6592226-CDS-L-elsbetiae_contig1846:15025..15432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 15026..15432 +
1691683090.5692954-CDS-L-elsbetiae_contig1846:15025..154321691683090.5692954-CDS-L-elsbetiae_contig1846:15025..15432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 15026..15432 +
1622815769.6706443-CDS-L-elsbetiae_contig1846:15801..158301622815769.6706443-CDS-L-elsbetiae_contig1846:15801..15830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 15802..15830 +
1691683090.5797894-CDS-L-elsbetiae_contig1846:15801..158301691683090.5797894-CDS-L-elsbetiae_contig1846:15801..15830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 15802..15830 +
1622815769.6832192-CDS-L-elsbetiae_contig1846:16112..162891622815769.6832192-CDS-L-elsbetiae_contig1846:16112..16289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 16113..16289 +
1691683090.5904405-CDS-L-elsbetiae_contig1846:16112..162891691683090.5904405-CDS-L-elsbetiae_contig1846:16112..16289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 16113..16289 +
1622815769.6939957-CDS-L-elsbetiae_contig1846:16567..166781622815769.6939957-CDS-L-elsbetiae_contig1846:16567..16678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 16568..16678 +
1691683090.6003644-CDS-L-elsbetiae_contig1846:16567..166781691683090.6003644-CDS-L-elsbetiae_contig1846:16567..16678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 16568..16678 +
1622815769.705245-CDS-L-elsbetiae_contig1846:17364..175311622815769.705245-CDS-L-elsbetiae_contig1846:17364..17531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 17365..17531 +
1691683090.6088858-CDS-L-elsbetiae_contig1846:17364..175311691683090.6088858-CDS-L-elsbetiae_contig1846:17364..17531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 17365..17531 +
1622815769.7167232-CDS-L-elsbetiae_contig1846:18098..181551622815769.7167232-CDS-L-elsbetiae_contig1846:18098..18155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 18099..18155 +
1691683090.6179268-CDS-L-elsbetiae_contig1846:18098..181551691683090.6179268-CDS-L-elsbetiae_contig1846:18098..18155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 18099..18155 +
1622815769.728711-CDS-L-elsbetiae_contig1846:18737..188391622815769.728711-CDS-L-elsbetiae_contig1846:18737..18839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 18738..18839 +
1691683090.6321397-CDS-L-elsbetiae_contig1846:18737..188391691683090.6321397-CDS-L-elsbetiae_contig1846:18737..18839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1846 18738..18839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1846.5365.1prot_L-elsbetiae_contig1846.5365.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1846 15026..18839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1846.5365.1

>prot_L-elsbetiae_contig1846.5365.1 ID=prot_L-elsbetiae_contig1846.5365.1|Name=mRNA_L-elsbetiae_contig1846.5365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=350bp
MYLSLFVFAIACFPDRSEDARAPSTERINSFSIEQTAVTVGLMEPLRPHP
PSSVVRRSFLSFISRFTGDLVLSWGCSGSGCACARARDMSIIHAIRFFDA
ILSTLFRAPSIYACPLFFPVEQRAGFDPHDDSDNLRIHNNIVYGNGNHGI
IASKRCNDVSIQNNIVFDNLNAGIMLHRSSDHAIVRNNTISNSGDSCIAI
FESMEGDYSGNHCTDNKYGIRWSVGASHNKIYDNEIYNSDQYGIYMYLGS
DPAGVPENTTYYTGGLPSFNIIANNLVDTATEGIKIGDTVGNEFTGNVFR
NTDTLRFRDSPQTIWKDNVIPAGLKIDPEGACFVAGSDMDQLGPEAILC*
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mRNA from alignment at L-elsbetiae_contig1846:14791..19987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1846.5365.1 ID=mRNA_L-elsbetiae_contig1846.5365.1|Name=mRNA_L-elsbetiae_contig1846.5365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5197bp|location=Sequence derived from alignment at L-elsbetiae_contig1846:14791..19987+ (Laminarionema elsbetiae ELsaHSoW15)
ATATCGTTTCGAGATGATCACGGCTTGCAATATGTAGAGATGGAACACGC
AGCCATTTGTTGGCTTCACCGGCCGATGCCGTGGTTGTTGATGAATGTCC
TACAAGGCCATTAGCAGTTTACGTCTTGTGTGAAGAAGTCTCCCCAGGGG
AACTGCTGTTCTCAACGTTCTGCACACTTCATACACCACCAGCGCGTTCC
GCTCGTGTTTCACACGAAACTCCCCATCCACGTGTATGTATTTATCTCTG
TTCGTATTCGCTATCGCCTGTTTTCCCGACCGCAGTGAAGATGCGCGCGC
GCCCTCGACAGAGCGAATTAATAGTTTTAGTATTGAGCAAACTGCTGTAA
CTGTTGGGTTGATGGAGCCCCTCCGCCCCCACCCACCATCGTCCGTCGTT
CGTCGTTCGTTTCTCTCATTCATCTCCCGATTCACTGGCGACCTTGTTTT
ATCGTGGGGCTGCTCCGGCAGTGGGTGTGCGTGTGCGCGCGCCCGTGACA
TGTCAATTATACATGCCATACGTTTTTTCGACGCAATCTTATCTACGTTG
TTTCGTGCGCCGTCTATATATGCATGCCCGCTTTTCTTTCCGGTGGAACA
ACGAGCAGGCTTCGACCCGCACGATGACTCCGACAACTTGCGGTGAGGGT
CACGATGGTCGTACGACAGGCGTCAAGTAGATACCGATTGCGGGGCATTT
CCGCATTGCACAAGACATATTGCTGGTGTCTGCACACGGAAGGAAGGAGC
CCCTCTCGCTGTGTTCGCGTTTGTTGCTCGTGTGCGTGGTGTGTTGTTTT
TGTCTGCATGTTGCGTACGGCTGCTTCGTGCGCGAAAGTCTGCGTTACTG
CGTTGGTTTTGTTTTGTGTCGAAAATACAAAAATTACAACGTGCATATCA
TGCCGGGCGTTTCGGCATACGCGGCGCGCTGCACAGCACCTGACGCTAAC
TTCTTCTGTCCTCCGAACGCTCCGGTGCCGGTTAATCTTGCTGTTTATCT
ACCTACGACAGGATCCACAACAACATCGTGTACGGCAACGGTGAGTTGGA
TAGGTTTTATGTACATGAGGACAAGCATCTCGGTCGACGACGGGAGAGCA
TGCCTGCTGTCGGTGATGCTGCTATCGGTACTACTGCTGATGCTACTGGC
AGTGCTGCTCTTTGTCGATGCCGTCGTTGTCGTTTATACTGCTGTAGATG
TTGCCGTCGGTGCTGTTGGGTGTTGCTCGCTATTTGTGCTGATCGGGCGT
TCTTGTAACTCGGATTTTGCCTTGTCTCTTGTCGGCACCGTTGTCGTCGT
CGTCTGTGTCTCCGTTGGCCAGGCAACCACGGGATCATCGCCTCGAAGCG
GTGCAACGACGTCTCCATCCAGAACAACATCGTGTTCGACAACCTCAACG
CGGGCATCATGCTCCACCGCTCCAGCGACCACGCCATCGTGCGCAACAAC
ACCATCTCCAACAGCGGAGACTCGTGCATCGCCATCTTCGAGTCCATGGG
TGAGGGAGGACGGAGGGAGGGAAAAGGAGTGGTGAATTATGGTTCTTTAT
TTATGTTGTTGCCCCCCTCCCCCCATCGCGCGCTCGGCGCCCGATCCGGA
AAAGGTGAACAAGGGGACGTTCGCACCCATCCGCTTCTGCCTTCATCGTA
TCGATGTTGATGTTTTTTTTTCTTTTTTTCTTTCGCCTCTTCTCTCCTTC
TCGCGACAGAACGTACTGAAACACGCCTCCGTCATCTGTACTGCGTCGTT
TTGCCCGCGTCGCCATTGCCACTGCAGAGGGTGACTACAGCGGCAACCAC
TGCACCGACAACAAGTACGGCATCCGGTGGTCTGTGGGGGCCTCGCACAA
CAAGATCTACGACAACGAGATCTACAACAGCGACCAGTGTGAGTTATTTC
GACCGAGCCCGAGAGCCCGTAGTGGACGCGAGCAAGCCCCTGATGTGCTC
ATGGGATGGGGCAGTTCAGTTGTTCTCGCCTCGACCGCGCATATCGGCTG
ACCGATGGCAAGGTCACAGTATTGTAGCAGTCTCAGAGACGACCAAACAC
AAAATCGCTTCCTGTGTACCTCGCGTGGCGCGTGCAAAAACATGTATACG
TACGTTATCGGTTGTTGACGACGGCCTCTTTTCGGCCGGAATTGGACACG
CACGCATACATGCATGCAATGTACGACTGGGTGTTGTCGGGTGTGCTTTG
AGCCCGTTCACTTCTTGGTGTGCGTATTGGAGCAATCAGTGAAAGTGATA
ATTTGTGTCAAGCAGGGGGCGGCATGAACGGGTCGGCTCTCGGGTCAGCT
CGGGTCGAACGATGGTTGACCTCAACCTCCTCGGCGAACGTTGTTGGCGC
TTTATTCGAGACGCCAGGCTCTCTCGGTCCAATTACATGCTCGTGGTGTA
GATCCGTGCAAGGATTTTTTTACACGGTGGACGTAGACCGCTGACGCTTG
CAGAACATTCGTTTGAAATGAGGCTTTGACAAATCAATTTTACGCTCAAT
TACTGCTGTTATCCCTTTTTGTTTTCCGACCTCCACGATCTTCCATGATG
CTCTCCATCTTCTTCCGACGACAGATGGTATCTACATGTACCTGGGCAGC
GACCCGGCGGGTGTGCCGGAGAACACCACATACTACACGGGCGGCCTGCC
CTCGTTTAACATCATCGCCAACAACCTCGTCGATACCGCCACTGAGGGCA
TCAAGATCGGCGACACTGTGGGCAACGAGTTCACGGGAAACGTGAGTGGC
CGGCCGAGGGTTAGGATGAGAGTTTTACTTGGGTCCATCCTGTTGGGGCA
GCGTGAGTGCGGCACGGTAGTCCCCACTTCGGCCTGGGCATTTCTACGTC
ACGTCGTGGAAAATTGAAAGTAGCCGTCCCTCCCCGAACCTGAAGATCCC
AACGTAGAGGTGGGCACGACCGCTGTTGGGGGTGGGTTTCGCGGGCGGCG
AGGGGGTGCCGTGTTGCCGTCGGATCGTGAGCAGATATGTAGCCGTTGGT
GGCGCAAAAGAGGCCGAGCACAAACGTGAAAGGTCGTATTTTTTTGTGTT
TGTTGTCTTCCGTGGGAAAAAAAACGCGTAAATACCGTGACAAGATCGGT
GTGGTGTATCACGTGTCATTCATGACTATACCCCGTCGCGCCATGGTGTG
CCAGGCCCAGTCTCGATCAGCCAAACAGCGGTATTTCCGGTGTGCTGGGA
AAAAGACAAGACGTGATGAGTCCGACGCCTTTTGACAAAACGTACCCCCT
CTCCACGCGCACGCATCCTGCATATCTCACGTGCCAACTGCGTTCATGGT
ATATACAGGTGTTCAGAAACACGGACACCCTGCGCTTCAGAGATTCGCCC
CAAACTATATGGAAGGTGAGTTTTTTGCTCGGTTAGTTGGACGGCCTCCT
ATTCCCGATCGACAGCGATAAGCGCGCACCCTGTTTATGTAGGTATATAC
CTTTCTGGTTTTCGCCCTTTTGCCGGCGGTGTCTCCATCTGTCGCCGCCT
GGGAGTGTTCAAATGGTGGCGATCGAAGCCCTGGTTTATTTCCCACGCAT
GCACTCCGTTCGTGCCTGTGGGGTAACGCGCATCATACGGGTGGAGAGAT
CGGAACGGTTTTGAATGTGAAGAAACAACAGCATGTGTTGTGTACACGGG
GGGCCATGCGCCCGTTGTTCTGGTATGTTAGCGCAAGGGGGATCTCAGTT
TTTCTTGCACCGCTGGCTGGCTGCTTCTCCGCACTTTTGACTTTTACCTG
TCTTCTCTCTCTCTTGGATCTTGTTGCTGTGTACACAAGTCTTGATTATT
TCGGGGTCCCAACCACTTTTGTCACGTCTTCTTTGTATTCTTAAGCCACA
TACATACACAAGTCTTGATTCCTTTGGGATCCCAACCACTTTGTCACGTC
TCTTCTGTATGTGCTTAACTTGATGTTGTTGGTCTTGACTCCTCCAGGAC
AACGTTATTCCGGCGGGGTTGAAGATCGACCCGGAAGGCGCGTGTTTCGT
GGCTGGCTCTGACATGGATCAACTGGGACCCGAAGCCATTCTTTGCTAAA
CATGTATTGCGGCGAAACTCTCGCTAAAACAAGATAGCGGCCAAAGGCAA
AAATCGCGGCGTGTTCTAGGCATGCAGTACATATGTACTCCGCCGATAGC
TATCCTACCATCCAATACTACTGTTTCACTGAGGTTTATTTTTAGACCGG
TTGGTTCGTTTGAACGCCGATTCTCTTGACGTTGTGCGATGACTGGCCGG
TGTCGGAGGGCACGTGTGTGTGTGTGTGCGTGTGTGCTTGACTATTTTGT
TTTGTTTGGGAGGGGGGACCGTATGGTTCTGCAAACCTTGCTGTTGTTGA
GACTCACTTTTTTTTTTCTCAAGTCAACTCTGTGTGTCCCGTGTCTTTTT
TCCGGGTTTTGTATATGAGAGCTGCGTATTTTCGCGGGCGGGGAAGGTAT
TGGAAAATACACCCCCTCCTTTACTCTAGAGAGTACGAGGCGGTGCGCGG
AGAAAGGGAGGAGGATGGGCGGGGGCTGACGTATGCATGCACTCCGTGTT
TGGATGCTTTCACAGTTTGTGGGGGTAAATTTAGTGTGTACATGGCAGGA
CTCCGCACGGAGGTAGAAAGTAAAGCGCTTGCCGAGCCCAGCCGCAGTGT
TTTTTTGGTGGTTTGCCGCACTGGGGGGGTGGGTTAGTTGAGTGACATGA
GGACTAGAGGCACCTGGCTATCATGAAGCCGTTTTTTGATTGGCTGGTTG
TGTACTGGGTGGGAGGTCAGGGTGCGTTTGGTCTTGCGCTCATGGCGAAT
GCAACCAGCATCCTGCTGCCGGGATTCCGCACGTGTTGTACTCAAAAGGC
GCGGTGGGAGTGTTGGCGGTGTTGTGTTTGTTTGCAAGCGTCCTAAGGGG
GGGGAGGGGGTTGTGGTAGGATGGACCACAGCTAGCCTTTCAGTCCTCGT
ACAGTATCTAGTAGGTGGTATTCCCGTATTCTATTACATACATCTAGTTG
AAACTGGGCTCTTGCTGCCCGCCGTTTAGTTTTCCCCGAATAACTATGAA
AATCGTTTTTGTCATGTGTTCGTCCATTCGATGTGGCACTGCTGTGCTGT
TTTTTTGTGAGGCTACGTCAATAATCCATGATACTTCTGAAGTATATTTT
TTCACGTTTTTGAGGAGCGACAAATATTGCGGGAGAACCGCTGCTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1846:14791..19987+

>mRNA_L-elsbetiae_contig1846.5365.1 ID=mRNA_L-elsbetiae_contig1846.5365.1|Name=mRNA_L-elsbetiae_contig1846.5365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2100bp|location=Sequence derived from alignment at L-elsbetiae_contig1846:14791..19987+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATTTATCTCTGTTCGTATTCGCTATCGCCTGTTTTCCCGACCGCAG
TGAAGATGCGCGCGCGCCCTCGACAGAGCGAATTAATAGTTTTAGTATTG
AGCAAACTGCTGTAACTGTTGGGTTGATGGAGCCCCTCCGCCCCCACCCA
CCATCGTCCGTCGTTCGTCGTTCGTTTCTCTCATTCATCTCCCGATTCAC
TGGCGACCTTGTTTTATCGTGGGGCTGCTCCGGCAGTGGGTGTGCGTGTG
CGCGCGCCCGTGACATGTCAATTATACATGCCATACGTTTTTTCGACGCA
ATCTTATCTACGTTGTTTCGTGCGCCGTCTATATATGCATGCCCGCTTTT
CTTTCCGGTGGAACAACGAGCAGGCTTCGACCCGCACGATGACTCCGACA
ACTTGCGATGTATTTATCTCTGTTCGTATTCGCTATCGCCTGTTTTCCCG
ACCGCAGTGAAGATGCGCGCGCGCCCTCGACAGAGCGAATTAATAGTTTT
AGTATTGAGCAAACTGCTGTAACTGTTGGGTTGATGGAGCCCCTCCGCCC
CCACCCACCATCGTCCGTCGTTCGTCGTTCGTTTCTCTCATTCATCTCCC
GATTCACTGGCGACCTTGTTTTATCGTGGGGCTGCTCCGGCAGTGGGTGT
GCGTGTGCGCGCGCCCGTGACATGTCAATTATACATGCCATACGTTTTTT
CGACGCAATCTTATCTACGTTGTTTCGTGCGCCGTCTATATATGCATGCC
CGCTTTTCTTTCCGGTGGAACAACGAGCAGGCTTCGACCCGCACGATGAC
TCCGACAACTTGCGGATCCACAACAACATCGTGTACGGCAACGGATCCAC
AACAACATCGTGTACGGCAACGGCAACCACGGGATCATCGCCTCGAAGCG
GTGCAACGACGTCTCCATCCAGAACAACATCGTGTTCGACAACCTCAACG
CGGGCATCATGCTCCACCGCTCCAGCGACCACGCCATCGTGCGCAACAAC
ACCATCTCCAACAGCGGAGACTCGTGCATCGCCATCTTCGAGTCCATGGG
CAACCACGGGATCATCGCCTCGAAGCGGTGCAACGACGTCTCCATCCAGA
ACAACATCGTGTTCGACAACCTCAACGCGGGCATCATGCTCCACCGCTCC
AGCGACCACGCCATCGTGCGCAACAACACCATCTCCAACAGCGGAGACTC
GTGCATCGCCATCTTCGAGTCCATGGAGGGTGACTACAGCGGCAACCACT
GCACCGACAACAAGTACGGCATCCGGTGGTCTGTGGGGGCCTCGCACAAC
AAGATCTACGACAACGAGATCTACAACAGCGACCAGTAGGGTGACTACAG
CGGCAACCACTGCACCGACAACAAGTACGGCATCCGGTGGTCTGTGGGGG
CCTCGCACAACAAGATCTACGACAACGAGATCTACAACAGCGACCAGTAT
GGTATCTACATGTACCTGGGCAGCGACCCGGCGGGTGTGCCGGAGAACAC
CACATACTACACGGGCGGCCTGCCCTCGTTTAACATCATCGCCAACAACC
TCGTCGATACCGCCACTGAGGGCATCAAGATCGGCGACACTGTGGGCAAC
GAGTTCACGGGAAACATGGTATCTACATGTACCTGGGCAGCGACCCGGCG
GGTGTGCCGGAGAACACCACATACTACACGGGCGGCCTGCCCTCGTTTAA
CATCATCGCCAACAACCTCGTCGATACCGCCACTGAGGGCATCAAGATCG
GCGACACTGTGGGCAACGAGTTCACGGGAAACGTGTTCAGAAACACGGAC
ACCCTGCGCTTCAGAGATTCGCCCCAAACTATATGGAAGGTGTTCAGAAA
CACGGACACCCTGCGCTTCAGAGATTCGCCCCAAACTATATGGAAGGACA
ACGTTATTCCGGCGGGGTTGAAGATCGACCCGGAAGGCGCGTGTTTCGTG
GCTGGCTCTGACATGGATCAACTGGGACCCGAAGCCATTCTTTGCTAAGA
CAACGTTATTCCGGCGGGGTTGAAGATCGACCCGGAAGGCGCGTGTTTCG
TGGCTGGCTCTGACATGGATCAACTGGGACCCGAAGCCATTCTTTGCTAA
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