mRNA_L-elsbetiae_contig18454.5363.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18454.5363.1
Unique NamemRNA_L-elsbetiae_contig18454.5363.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.050e-35
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 PKNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            P NPKVVSDMT+LHHIHEAGIL+NL ER K  +QRPYTFMGTILIAVNPL++V+DPEMS+Y+NR L+PE PHPYAIAE+S
Sbjct:   77 PHNPKVVSDMTALHHIHEAGILYNLGERAKLDNQRPYTFMGTILIAVNPLRKVADPEMSKYMNRSLDPEAPHPYAIAELS 156          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: D7FPQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.430e-35
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 PKNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            P NPKVV+DMTSLHHIHEAGIL NL ER+K +DQRPYTFMGTILIAVNPL+RV +PEM++Y++R LNPETPHPYAIAE++
Sbjct:   55 PPNPKVVADMTSLHHIHEAGILHNLRERSKLQDQRPYTFMGTILIAVNPLRRVPNPEMTDYMDRSLNPETPHPYAIAELA 134          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.720e-34
Identity = 61/78 (78.21%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    7 NPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            NPKVVSDMTSLHHIHEAGIL+NL ER+K + QRPYTFMGTILIAVNPL+R+ DP++SEY+NR L+PE PHPYAIAE++
Sbjct:   73 NPKVVSDMTSLHHIHEAGILYNLRERSKLEGQRPYTFMGTILIAVNPLRRIPDPDVSEYMNRSLDPEAPHPYAIAELA 150          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.340e-34
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 PKNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            P NPKVV+DMTSLHHIHEAGIL NL +R + KDQ+ YTFMGT+LIAVNPL+R+ DP M  ++NRPLNPETPHPYAIAE+S
Sbjct:   61 PHNPKVVADMTSLHHIHEAGILHNLGQRAQIKDQKAYTFMGTVLIAVNPLRRLEDPPMESFMNRPLNPETPHPYAIAELS 140          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: A0A6H5JRA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.110e-33
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 PKNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            P NP+VV DMTSLHHIHEAGIL NL ER+K ++QRPYTFMGTILIAVNPLQRV  P+M +Y+++ LNPETPHPYAIAE++
Sbjct:   69 PTNPRVVPDMTSLHHIHEAGILHNLRERSKLRNQRPYTFMGTILIAVNPLQRVPSPDMRDYMDKSLNPETPHPYAIAELA 148          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: D8LMS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.110e-33
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 PKNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            P NP+VV DMTSLHHIHEAGIL NL ER+K ++QRPYTFMGTILIAVNPLQRV  P+M +Y+++ LNPETPHPYAIAE++
Sbjct:   69 PTNPRVVPDMTSLHHIHEAGILHNLRERSKLRNQRPYTFMGTILIAVNPLQRVPSPDMRDYMDKSLNPETPHPYAIAELA 148          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: A0A6H5JUQ2_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUQ2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.920e-31
Identity = 62/104 (59.62%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    7 NPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFM--------------------------GTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            NPKVVSDMTSLHHIHEAGIL+NL ER+K + QRPYTFM                          GTILIAVNPL+R+ DP++SEY+NR L+PE PHPYAIAEV+
Sbjct:   28 NPKVVSDMTSLHHIHEAGILYNLRERSKLESQRPYTFMKAVVLYLQRHASSAVLSPPRHRRFCQGTILIAVNPLRRIPDPDVSEYMNRSLDPEAPHPYAIAEVT 131          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: A0A836C7J1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7J1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.450e-27
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 PKNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            P+NPKVV+DMT+L HI+E GIL NL  R+  +DQRPYTFMGT+LI VNPLQ V DP M  YV + L+PE PHPYAIAE++
Sbjct:   77 PQNPKVVADMTALFHINEPGILHNLRVRSDLRDQRPYTFMGTLLICVNPLQVVPDPPMETYVGQQLDPEAPHPYAIAELA 156          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: A0A836C8E2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.170e-26
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    4 KNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            +NPKVV+DMT+LHHI+E GIL NL  R+  ++QRPYT+MGTILI VNPL+ V DP MSE+++  L+PE PHPYAIAE++
Sbjct:   62 QNPKVVADMTALHHINEPGILHNLRVRSDLRNQRPYTYMGTILICVNPLRTVPDPPMSEFLDVSLDPEKPHPYAIAELA 140          
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Match: A0A6H5LIB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIB2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.180e-26
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    1 PKNPKVVSDMTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMSEYVNRPLNPETPHPYAIAEVS 240
            PKN  VV+DMT+LHHIHEAGIL NL ER++   Q PYT+MGTIL+AVNPL+ V  P + +++NR L+PE PHPYAIAE+S
Sbjct:    3 PKNHSVVADMTALHHIHEAGILHNLKERSRPWRQTPYTWMGTILLAVNPLKAVPQPPIEDFMNRSLDPERPHPYAIAELS 82          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18454.5363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Q7_ECTSI1.050e-3578.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPQ0_ECTSI1.430e-3578.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LHQ0_ECTSI1.720e-3478.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMW4_ECTSI2.340e-3475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRA1_9PHAE1.110e-3375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS5_ECTSI1.110e-3375.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUQ2_9PHAE8.920e-3159.62Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A836C7J1_9STRA2.450e-2766.25P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836C8E2_9STRA2.170e-2664.56P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5LIB2_9PHAE2.180e-2665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18454contigL-elsbetiae_contig18454:509..1124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D7FPQ0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size246
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18454.5363.1prot_L-elsbetiae_contig18454.5363.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18454 509..1097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.4242017-CDS-L-elsbetiae_contig18454:508..6341622815769.4242017-CDS-L-elsbetiae_contig18454:508..634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18454 509..634 -
1691683090.3913095-CDS-L-elsbetiae_contig18454:508..6341691683090.3913095-CDS-L-elsbetiae_contig18454:508..634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18454 509..634 -
1622815769.4364014-CDS-L-elsbetiae_contig18454:1004..10971622815769.4364014-CDS-L-elsbetiae_contig18454:1004..1097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18454 1005..1097 -
1691683090.4049342-CDS-L-elsbetiae_contig18454:1004..10971691683090.4049342-CDS-L-elsbetiae_contig18454:1004..1097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18454 1005..1097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.4486098-UTR-L-elsbetiae_contig18454:1097..11241622815769.4486098-UTR-L-elsbetiae_contig18454:1097..1124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18454 1098..1124 -
1691683090.4180293-UTR-L-elsbetiae_contig18454:1097..11241691683090.4180293-UTR-L-elsbetiae_contig18454:1097..1124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18454 1098..1124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18454.5363.1

>prot_L-elsbetiae_contig18454.5363.1 ID=prot_L-elsbetiae_contig18454.5363.1|Name=mRNA_L-elsbetiae_contig18454.5363.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MTSLHHIHEAGILFNLAERTKFKDQRPYTFMGTILIAVNPLQRVSDPEMS
EYVNRPLNPETPHPYAIAEVSA*
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mRNA from alignment at L-elsbetiae_contig18454:509..1124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18454.5363.1 ID=mRNA_L-elsbetiae_contig18454.5363.1|Name=mRNA_L-elsbetiae_contig18454.5363.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=616bp|location=Sequence derived from alignment at L-elsbetiae_contig18454:509..1124- (Laminarionema elsbetiae ELsaHSoW15)
CCCAAAAACCCAAAAGTGGTTAGCGACATGACTTCATTGCATCACATCCA CGAGGCTGGCATCCTCTTCAACTTGGCTGAGCGGACGAAGTTCAAGGACC AGCGGCCGTACACCTTCATGGTGAGCGTTTCAACCGAACTACAGCGACAA ATGGTTTTTGTTTTTTTAAGTCAGAGCGCGGGTGCTTGCTGTTGTTGCTG CACTACATATCTTCAAGCGTGGAGGTTCAAAGACCTGAAGTAGACAGGAA CATGTAGAATGTAAGCAGGGCAATGGGTTGGCACAACTTTAGCGTGGCCG TCAGACATGTGTAGACCTCACGGCCAACTCGGTTTGGCATGATTCATGCT ACAGTGACACACACACACATACCTACGATCACCGTCCAGACTGTGTATTG ATTTCAAGCGAAGCTGGGAAATATTTCCCAGGTACCTGAGTACTCTCCTC GCCTGTCTGCCTGCCGCTGCCCCTCTTGACATCCCACCAGGGCACCATTC TGATCGCTGTGAACCCGTTGCAAAGAGTGTCCGATCCGGAAATGAGCGAG TACGTGAATCGCCCCCTCAACCCCGAAACTCCACACCCGTACGCCATCGC CGAGGTGAGCGCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18454:509..1124-

>mRNA_L-elsbetiae_contig18454.5363.1 ID=mRNA_L-elsbetiae_contig18454.5363.1|Name=mRNA_L-elsbetiae_contig18454.5363.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig18454:509..1124- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCATTGCATCACATCCACGAGGCTGGCATCCTCTTCAACTTGGC
TGAGCGGACGAAGTTCAAGGACCAGCGGCCGTACACCTTCATGATGACTT
CATTGCATCACATCCACGAGGCTGGCATCCTCTTCAACTTGGCTGAGCGG
ACGAAGTTCAAGGACCAGCGGCCGTACACCTTCATGGGCACCATTCTGAT
CGCTGTGAACCCGTTGCAAAGAGTGTCCGATCCGGAAATGAGCGAGTACG
TGAATCGCCCCCTCAACCCCGAAACTCCACACCCGTACGCCATCGCCGAG
GTGAGCGCTTAAGGCACCATTCTGATCGCTGTGAACCCGTTGCAAAGAGT
GTCCGATCCGGAAATGAGCGAGTACGTGAATCGCCCCCTCAACCCCGAAA
CTCCACACCCGTACGCCATCGCCGAGGTGAGCGCTTAA
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