prot_L-elsbetiae_contig1844.5357.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1844.5357.1
Unique Nameprot_L-elsbetiae_contig1844.5357.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length223
Homology
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BLAST of mRNA_L-elsbetiae_contig1844.5357.1 vs. uniprot
Match: A0A6H5KZA9_9PHAE (TGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZA9_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.690e-98
Identity = 165/207 (79.71%), Postives = 180/207 (86.96%), Query Frame = 0 
Query:   16 DAAKPVDDVPLHVHTGVWPLNMGVMPMAQRGGDDGGEPDTLIEIDEIPFMTRGEKRLAREVELQHARLSMFAVLAWTAVEMERVSGLATLKPDALAAMHESPFVYLSSLSPQQALRVVMVMGVLEGGFLIFNSLQDRFEGKETEREATSSTETPLTAQEKAMEERRKFHARERELHNGRMAMIAITCLSVQSALAGEDSLARLLGLF 222
            ++ +P  DVPLHVHTGVWPLNMG MPM QR G+   EP+ L+EIDEIPFMT+GEKRLAREVELQHARLSMFAVLAW AVEMER+SGLA LKPDALAA+HESPF YLSSLSPQQALRVVMVMGVLEGGFL+ NSLQDRFE  E  R+  +     LTAQEKAM++RRKFHARERELHNGR+AMIAI CLSVQSALAGEDSLARL GLF
Sbjct:  760 ESERPAVDVPLHVHTGVWPLNMGAMPMTQRSGE---EPELLMEIDEIPFMTKGEKRLAREVELQHARLSMFAVLAWMAVEMERISGLAMLKPDALAALHESPFAYLSSLSPQQALRVVMVMGVLEGGFLVCNSLQDRFERNEAIRQDKNDA---LTAQEKAMQDRRKFHARERELHNGRLAMIAIVCLSVQSALAGEDSLARLFGLF 960
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BLAST of mRNA_L-elsbetiae_contig1844.5357.1 vs. uniprot
Match: W7TMT7_9STRA (Beta-ig-h3 fasciclin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMT7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.100e-5
Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = 0 
Query:   74 REVELQHARLSMFAVLAWTAVEMERVSGLATLKP--DALA-AMHESPFV-YLSSLSPQQALRVVMVMGVLEGGFLIFNSLQDRFEGKETEREATSST---ETPLTAQEKAMEERRKFHARERELHNGRMAMIAITCLSVQSALAGEDSLA 216
            R+ E++HARL+M A +     E+   +     +P  DAL  + H +P V +L  L P  AL  ++  GV    + +  + +D+  G+ ++ EA +     E+P    E+  EER K  A  REL+NGR+AMIA+  + VQ  + G   L+
Sbjct:  280 RDAEIKHARLAMLAAIGILTQELVVPTHPYAFQPVLDALRDSTHMAPDVSFLLPLPPIAALAAILAPGVAWEVWSLRRASKDKAPGRPSKEEALTQILKRESPDFEAERE-EEREKIDAGNRELNNGRLAMIAVVGMLVQEIVTGRSVLS 428
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1844.5357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZA9_9PHAE1.690e-9879.71TGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TMT7_9STRA1.100e-532.67Beta-ig-h3 fasciclin n=1 Tax=Nannochloropsis gadit... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 46..221
e-value: 2.0E-16
score: 62.3
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 71..207
e-value: 1.3E-13
score: 51.8
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 72..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1844contigL-elsbetiae_contig1844:18859..21809 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1844.5357.1mRNA_L-elsbetiae_contig1844.5357.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1844 18403..22665 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1844.5357.1 ID=prot_L-elsbetiae_contig1844.5357.1|Name=mRNA_L-elsbetiae_contig1844.5357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
MAAAEAAAEAAAAAVDAAKPVDDVPLHVHTGVWPLNMGVMPMAQRGGDDG
GEPDTLIEIDEIPFMTRGEKRLAREVELQHARLSMFAVLAWTAVEMERVS
GLATLKPDALAAMHESPFVYLSSLSPQQALRVVMVMGVLEGGFLIFNSLQ
DRFEGKETEREATSSTETPLTAQEKAMEERRKFHARERELHNGRMAMIAI
TCLSVQSALAGEDSLARLLGLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind