mRNA_L-elsbetiae_contig18438.5354.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18438.5354.1
Unique NamemRNA_L-elsbetiae_contig18438.5354.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Match: A0A6H5KCX2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.250e-34
Identity = 83/133 (62.41%), Postives = 92/133 (69.17%), Query Frame = 2 
Query:  152 VRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSLVSPKDGMIREESSIPGVSIWTSKTAAFSKTPT-----PPSLHTNAAATTSYYRG--NDEVAVFSGDCQDGNGGIGDADVEPPSRGARED 529
            VR AS+ LGV LVL S  VECSRARRRHH TPA + N   NPSLVSP+ GMIREESSIPGVSIW SK AA S               + A++ S Y G  N E A F+G+CQDG GGIGDADVEPPSRGARE+
Sbjct:    5 VRPASLLLGVGLVLLSP-VECSRARRRHHPTPAAYANSGENPSLVSPQQGMIREESSIPGVSIWFSKKAAASSASARRXXXXXXXXADPASSASSYCGDSNAEPAEFAGECQDGRGGIGDADVEPPSRGAREE 136
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BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Match: D8LRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV9_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.070e-31
Identity = 77/131 (58.78%), Postives = 86/131 (65.65%), Query Frame = 2 
Query:  152 VRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSLVSPKDGMIREESSIPGVSIWTSKTAAFSKTPTPPSLHTNAAA-----TTSYYRGNDEVAVFSGDCQDGNGGIGDADVEPPSRGARED 529
            VR AS+ LGV LVL S  VECSRARRRHH TPA + N   NPSLV+P+ G+IREESSIPGVSIWTS+ A                       +SY   N E A F G+CQDG GGIGDADVEPPSRGARE+
Sbjct:    5 VRPASLLLGVGLVLLSP-VECSRARRRHHPTPAAYANSGDNPSLVTPQQGLIREESSIPGVSIWTSRRAXXXXXXXXXXXXXXXXXXXXXXASSYCYSNAEPAGFPGECQDGRGGIGDADVEPPSRGAREE 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCX2_9PHAE4.250e-3462.41AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRV9_ECTSI1.070e-3158.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18438contigL-elsbetiae_contig18438:557..2004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size534
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18438.5354.1prot_L-elsbetiae_contig18438.5354.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18438 557..1871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.6375444-CDS-L-elsbetiae_contig18438:556..6221622815768.6375444-CDS-L-elsbetiae_contig18438:556..622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18438 557..622 -
1691683089.9314919-CDS-L-elsbetiae_contig18438:556..6221691683089.9314919-CDS-L-elsbetiae_contig18438:556..622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18438 557..622 -
1622815768.6505816-CDS-L-elsbetiae_contig18438:1538..18711622815768.6505816-CDS-L-elsbetiae_contig18438:1538..1871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18438 1539..1871 -
1691683089.9428322-CDS-L-elsbetiae_contig18438:1538..18711691683089.9428322-CDS-L-elsbetiae_contig18438:1538..1871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18438 1539..1871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.662667-UTR-L-elsbetiae_contig18438:1871..20041622815768.662667-UTR-L-elsbetiae_contig18438:1871..2004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18438 1872..2004 -
1691683089.9538007-UTR-L-elsbetiae_contig18438:1871..20041691683089.9538007-UTR-L-elsbetiae_contig18438:1871..2004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18438 1872..2004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18438.5354.1

>prot_L-elsbetiae_contig18438.5354.1 ID=prot_L-elsbetiae_contig18438.5354.1|Name=mRNA_L-elsbetiae_contig18438.5354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MGLLPHVRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSL
VSPKDGMIREESSIPGVSIWTSKTAAFSKTPTPPSLHTNAAATTSYYRGN
DEVAVFSGDCQDGNGGIGDADVEPPSRGAREDQ
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mRNA from alignment at L-elsbetiae_contig18438:557..2004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18438.5354.1 ID=mRNA_L-elsbetiae_contig18438.5354.1|Name=mRNA_L-elsbetiae_contig18438.5354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1448bp|location=Sequence derived from alignment at L-elsbetiae_contig18438:557..2004- (Laminarionema elsbetiae ELsaHSoW15)
ACAGAACCGTGTTGTTGCTCGACCTCCGCGGAAAGCCTTGCGCGCCGCAT
TCTTCCATACTTACTCCAGGAGGCAAGAGTGGGTGGACGTTACAACCCGT
GCAGACTAGAGTAGAGGGAGAGGTGGAACGCAAATGGGGCTGTTACCTCA
CGTGCGATGGGCGTCCGTCTTCCTCGGCGTAGCGCTCGTGCTCCGTTCGT
CTCAGGTGGAGTGCTCTCGCGCCAGGCGCCGCCATCATGCCACGCCCGCT
ACCCATACCAACGGTGATGGAAATCCCTCCCTGGTTTCACCCAAAGACGG
AATGATCCGCGAGGAGTCATCCATTCCTGGCGTGTCGATCTGGACGTCGA
AAACTGCGGCGTTTTCGAAAACACCAACACCACCATCTTTGCATACCAAC
GCTGCGGCCACCACCTCCTACTACCGCGGCAATGATGAGGTGGCGGTATT
TTCGGGCGATTGCCAGGTGGGTTTAATTGATAGTGAAAGGGTGCGCAATG
TTAATGTTTTTCTTGTTGGGTGCCGTTGAAATCTTGATTTGGATGCCTTC
GTTCGTTGCAGCACGAATGCTTGCTGCCTGTGGGACACGTGGGTGAGCGT
TGCAAGCAACACACGAAGCAGATGTGTGCGGGTGTAGAGGATTGGTTTGT
AGCTCTGCAGCGAAGCAGCTGCGCGCACTTGCAGGTATGAGACCTGCGAG
ACAGAGAGGTGTCAAGGGCGTTTTTTCCATTCCATACCCCTGTGGTGCGG
ACACGCGTCTGCGCGTGCCAGGCGAACCGCCGTTGTGTGCATCTACAACA
TGTGTATGTAGACATGCATATATCTATGTACGAGGTACATGTTCATATCT
ACTACAATACGCAGGATGCAGACCTGTAAGAATTACGCATGAACGAGCAA
TGTTCGTCTGGCACTACTCTGTGAGACCCTTTCAAAGCAAACTGATGCGC
AGGCCAGTACGTTCTGTACCGCAGCAGCAGCAGCGGTCGAGGTGCATTTT
TGCCGGCAAACACACACACATACACGTATCTATACATTCAGCCACCAACG
CCTCGCTTTTCGCTGCGATGATCGTGCAATGTGCGGCGTTGCACGTGGGT
TGTTTGCTGCTTCATCACCTCTCCTGAGATACTGCCACGGCTGTCCTGGT
TTGCTCCCCTCTGGCTGCCGTGCCATTCGACCACAGCCGTGACAGCAAGC
AGCACCCTCTCGAAGTTGAAGGTTTTCGCCGCAAAGCCTCGCTAACTTGC
CCTCGCGACGTTTGGCCGCACTAAACCACAACGAACGCTTTTGGTTTCGC
CTTGACGCTTCGCCGATCTTCGCCCCCGAACGGCGCCGCGCTTCGCCCGC
CCTGTGTCGGCCGTCGCGTTTCGTGAGAGCAGGACGGGAACGGGGGCATC
GGAGACGCGGACGTGGAGCCCCCCTCGAGAGGGGCCAGGGAAGACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18438:557..2004-

>mRNA_L-elsbetiae_contig18438.5354.1 ID=mRNA_L-elsbetiae_contig18438.5354.1|Name=mRNA_L-elsbetiae_contig18438.5354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig18438:557..2004- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTGTTACCTCACGTGCGATGGGCGTCCGTCTTCCTCGGCGTAGC
GCTCGTGCTCCGTTCGTCTCAGGTGGAGTGCTCTCGCGCCAGGCGCCGCC
ATCATGCCACGCCCGCTACCCATACCAACGGTGATGGAAATCCCTCCCTG
GTTTCACCCAAAGACGGAATGATCCGCGAGGAGTCATCCATTCCTGGCGT
GTCGATCTGGACGTCGAAAACTGCGGCGTTTTCGAAAACACCAACACCAC
CATCTTTGCATACCAACGCTGCGGCCACCACCTCCTACTACCGCGGCAAT
GATGAGGTGGCGGTATTTTCGGGCGATTGCCAGATGGGGCTGTTACCTCA
CGTGCGATGGGCGTCCGTCTTCCTCGGCGTAGCGCTCGTGCTCCGTTCGT
CTCAGGTGGAGTGCTCTCGCGCCAGGCGCCGCCATCATGCCACGCCCGCT
ACCCATACCAACGGTGATGGAAATCCCTCCCTGGTTTCACCCAAAGACGG
AATGATCCGCGAGGAGTCATCCATTCCTGGCGTGTCGATCTGGACGTCGA
AAACTGCGGCGTTTTCGAAAACACCAACACCACCATCTTTGCATACCAAC
GCTGCGGCCACCACCTCCTACTACCGCGGCAATGATGAGGTGGCGGTATT
TTCGGGCGATTGCCAGGACGGGAACGGGGGCATCGGAGACGCGGACGTGG
AGCCCCCCTCGAGAGGGGCCAGGGAAGACCAGGACGGGAACGGGGGCATC
GGAGACGCGGACGTGGAGCCCCCCTCGAGAGGGGCCAGGGAAGACCAG
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