prot_L-elsbetiae_contig1843.5352.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1843.5352.1
Unique Nameprot_L-elsbetiae_contig1843.5352.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length67
Homology
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 7.720e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 122 bits (305), Expect = 4.170e-35
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 0
Query:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            D   IKLAK+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    2 DTAPIKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.220e-32
Identity = 53/61 (86.89%), Postives = 60/61 (98.36%), Query Frame = 0
Query:    6 IKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            +KLAKV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    5 VKLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.510e-31
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0
Query:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            D+Q +KL KV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    2 DSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)

HSP 1 Score: 110 bits (275), Expect = 1.620e-30
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D     RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:    3 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.580e-30
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q +KLAKV++VLGRTGNTGNVTQVRVEF+DD        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:   36 QPVKLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)

HSP 1 Score: 107 bits (267), Expect = 2.700e-29
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 0
Query:    8 LAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            LAKV  VLGRTGNTGNVTQVRVEFL D  R IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: K0SWS9_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SWS9_THAOC)

HSP 1 Score: 109 bits (273), Expect = 1.190e-28
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:  129 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDADAGTGTGRSIVRNVKGPVREGDILCLLEWEREARRLR 196          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A2R5G0Q3_9STRA (40S ribosomal protein S28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0Q3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.540e-28
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0
Query:    4 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
            Q + LA+V +VL RTG TGNVTQVRVEFLDD  RSIIRNVKGPVREGD+L LLEWEREARRLR
Sbjct:   10 QAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72          
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A1E7FGX9_9STRA (Ribosomal protein S28e (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGX9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.990e-28
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    7 KLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 66
            KLAKV+KVLGRTGNTGNVTQVRVEF+D  +     RSI+RNVKGPVRE DILCLLEWEREARRLR
Sbjct:    1 KLAKVSKVLGRTGNTGNVTQVRVEFMDAESGAGSGRSIVRNVKGPVRENDILCLLEWEREARRLR 65          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI7.720e-40100.0040S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
F0XVZ1_AURAN4.170e-3589.23Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CPG2_9STRA3.220e-3286.8940S ribosomal protein S28 n=1 Tax=Tribonema minus ... [more]
A0A4D9CYK0_9STRA5.510e-3181.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7GCW6_PHATC1.620e-3084.62Predicted protein n=4 Tax=Naviculales TaxID=38748 ... [more]
A0A7S0CCP2_9STRA6.580e-3079.71Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K3WAC4_GLOUD2.700e-2989.83Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
K0SWS9_THAOC1.190e-2880.88Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
A0A2R5G0Q3_9STRA2.540e-2880.9540S ribosomal protein S28 n=1 Tax=Hondaea fermenta... [more]
A0A1E7FGX9_9STRA2.990e-2881.54Ribosomal protein S28e (Fragment) n=1 Tax=Fragilar... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..66
e-value: 1.0E-35
score: 123.4
NoneNo IPR availablePRODOMPD005541coord: 6..47
e-value: 3.0E-12
score: 168.0
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 5..65
e-value: 1.2E-32
score: 111.7
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 4..66
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1843contigL-elsbetiae_contig1843:19850..21330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1843.5352.1mRNA_L-elsbetiae_contig1843.5352.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1843 19850..21330 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1843.5352.1 ID=prot_L-elsbetiae_contig1843.5352.1|Name=mRNA_L-elsbetiae_contig1843.5352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
QDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREG
DILCLLEWEREARRLR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000289Ribosomal_S28e
IPR012340NA-bd_OB-fold