mRNA_L-elsbetiae_contig1843.5352.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1843.5352.1
Unique NamemRNA_L-elsbetiae_contig1843.5352.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 7.720e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 122 bits (305), Expect = 4.170e-35
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            D   IKLAK+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    2 DTAPIKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.220e-32
Identity = 53/61 (86.89%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:   16 IKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            +KLAKV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    5 VKLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.510e-31
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            D+Q +KL KV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    2 DSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)

HSP 1 Score: 110 bits (275), Expect = 1.620e-30
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D     RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:    3 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.580e-30
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKV++VLGRTGNTGNVTQVRVEF+DD        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:   36 QPVKLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)

HSP 1 Score: 107 bits (267), Expect = 2.700e-29
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   22 LAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            LAKV  VLGRTGNTGNVTQVRVEFL D  R IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: K0SWS9_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SWS9_THAOC)

HSP 1 Score: 109 bits (273), Expect = 1.190e-28
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:  129 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDADAGTGTGRSIVRNVKGPVREGDILCLLEWEREARRLR 196
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A2R5G0Q3_9STRA (40S ribosomal protein S28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0Q3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.540e-28
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q + LA+V +VL RTG TGNVTQVRVEFLDD  RSIIRNVKGPVREGD+L LLEWEREARRLR
Sbjct:   10 QAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72
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BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Match: A0A1E7FGX9_9STRA (Ribosomal protein S28e (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGX9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.990e-28
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   19 KLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            KLAKV+KVLGRTGNTGNVTQVRVEF+D  +     RSI+RNVKGPVRE DILCLLEWEREARRLR
Sbjct:    1 KLAKVSKVLGRTGNTGNVTQVRVEFMDAESGAGSGRSIVRNVKGPVRENDILCLLEWEREARRLR 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1843.5352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI7.720e-40100.0040S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
F0XVZ1_AURAN4.170e-3589.23Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CPG2_9STRA3.220e-3286.8940S ribosomal protein S28 n=1 Tax=Tribonema minus ... [more]
A0A4D9CYK0_9STRA5.510e-3181.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7GCW6_PHATC1.620e-3084.62Predicted protein n=4 Tax=Naviculales TaxID=38748 ... [more]
A0A7S0CCP2_9STRA6.580e-3079.71Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K3WAC4_GLOUD2.700e-2989.83Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
K0SWS9_THAOC1.190e-2880.88Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
A0A2R5G0Q3_9STRA2.540e-2880.9540S ribosomal protein S28 n=1 Tax=Hondaea fermenta... [more]
A0A1E7FGX9_9STRA2.990e-2881.54Ribosomal protein S28e (Fragment) n=1 Tax=Fragilar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1843contigL-elsbetiae_contig1843:19850..21330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D7FRM9
Preferred namerps28
KEGG rclassRC00003,RC03279
KEGG koko:K02493,ko:K02979,ko:K07767,ko:K08767
KEGG ReactionR10806
KEGG Pathwayko03010,ko03320,ko04979,map03010,map03320,map04979
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000309,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0003824,GO:0004515,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009066,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009435,GO:0009888,GO:0009987,GO:0010467,GO:0012505,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034627,GO:0034628,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035220,GO:0035295,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0046034,GO:0046483,GO:0046496,GO:0048513,GO:0048731,GO:0048856,GO:0051186,GO:0051188,GO:0055086,GO:0060429,GO:0065003,GO:0070013,GO:0070566,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0072521,GO:0072524,GO:0072525,GO:0090304,GO:0090407,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1990904,GO:1990966
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG2053@1,KOG3502@2759
EC2.1.1.297,3.6.4.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03012,ko04147,ko04812
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.5910974-CDS-L-elsbetiae_contig1843:19849..199271622815768.5910974-CDS-L-elsbetiae_contig1843:19849..19927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1843 19850..19927 +
1691683089.9044788-CDS-L-elsbetiae_contig1843:19849..199271691683089.9044788-CDS-L-elsbetiae_contig1843:19849..19927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1843 19850..19927 +
1622815768.6030328-CDS-L-elsbetiae_contig1843:21207..213301622815768.6030328-CDS-L-elsbetiae_contig1843:21207..21330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1843 21208..21330 +
1691683089.9199395-CDS-L-elsbetiae_contig1843:21207..213301691683089.9199395-CDS-L-elsbetiae_contig1843:21207..21330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1843 21208..21330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1843.5352.1prot_L-elsbetiae_contig1843.5352.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1843 19850..21330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1843.5352.1

>prot_L-elsbetiae_contig1843.5352.1 ID=prot_L-elsbetiae_contig1843.5352.1|Name=mRNA_L-elsbetiae_contig1843.5352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
QDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREG
DILCLLEWEREARRLR*
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mRNA from alignment at L-elsbetiae_contig1843:19850..21330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1843.5352.1 ID=mRNA_L-elsbetiae_contig1843.5352.1|Name=mRNA_L-elsbetiae_contig1843.5352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1481bp|location=Sequence derived from alignment at L-elsbetiae_contig1843:19850..21330+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGACAACCAGGGCATCAAGCTGGCGAAGGTGAACAAGGTGCTCGGCCG
CACCGGTAACACCGGTAACGTGACCCAGGTGTGTGGACACACCGCTGTGT
CGTGCGTTTTTGTCATCGATTCGGCACTTGTCCAAGGGTGGTCGTGTCAT
CGAAGTGGTTTTGTCTCATCTGCCCTCCCAGTTTCTTTAAAGAAGAGGCT
AAGTAGAGGGTTTGTGCGTACGCCTCTGGTGCTCGCGACTAGAATGGAGG
GAAGCTCAAAGTGCGCCCTGTCCGTACGCCGCGCGATGTATCTGCGTACC
CACGCTAAAAGTGTTCCAAGTTGAGCAAACGGTAGAATCTGCTCTCGGCA
TCGGTCATGCACCGTGTGGCTCTTGCGTCCGAACACAGTTCTGGTCCCCT
ATAGTTTGCGCCTCGCCCCGCTTTATAGAGACAGATGAGAGCCACCCCGA
GGAATTCCCCCGCAGCTGGTTGATGTCTATAATGTCTTACCTTTTGGGGG
GGCTGTTCCCCATCTATCAATCTACCGCGCTAGTGCGGTCGCTGCCACGC
CCGCGGCGAGGAAGCACGTCGCAGCAGTGCCTGACGCAGGGCGACGATCA
TGCCGCGGTAGACGAAAATGTTGGTCCGGGAATCCTCGGCCCAAGTTGAA
AGAGCTCGCCGCGGCGGTGGTACATATCTCGGCCTTGCCGGGAATAGTTT
TGGGCTGTTTTTGCGTGGGTGTGGTCGCAGTTGTTCCAAGCAGATATCGA
GAGGCCTTTTTGTATCGGAAGGTACACAAGTCCTGCTTGCAGAGAACCAC
TGGGGCAGGTACCACTCTACGCTTTGCTTGGCACGTTTTGGCATAGTCCG
GTCTGGTTGTTGAGATGCACGCCTTTTTATTCACCAGTAGAATGTTCTCA
GCTCAGCAGAAACATAGCACTTCATCCATCGCGCAGCAGTCCAGCATGTT
TGCTATCTGCTGCCTTAGCTCGCTGCCCTCTTCACCGTTTGTTCGGCTAT
AGTTTGCTTCATATTTACGCAGTCCGGTTTCTGGTCGTTGTTGTGGATTG
TGAAAAGTGTGTGCTCACACGCATCCACCAAAACAGCGACAGCGCAACCG
GACGTTTTGTAGGCCATCAAGTCGGTAGTAATATTGTACCGGTGTGGCAC
ATTGGAGGAGTGCTACCACACGCGCGTTTTCGAAGTTTTCCGTTCCGAGC
ACTTCATACTAGCCATACGCATGCGGTTTGCGTTCATCACCCGCTGGAGG
CATTTTCCGGTGTTCCGGTGTCATGTGGCACGACTTAACTTGTACAACAT
CTCCGATACCCTCGCCTCTCGCTGAACGTGTACTGAATGCTATTTTTTTT
TGCGGCAGGTGCGCGTGGAGTTCTTGGATGACCCGACCCGTTCCATCATC
CGCAACGTCAAGGGCCCCGTTCGCGAGGGCGACATCCTCTGCCTCCTCGA
GTGGGAGCGCGAGGCCCGCCGTCTGAGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1843:19850..21330+

>mRNA_L-elsbetiae_contig1843.5352.1 ID=mRNA_L-elsbetiae_contig1843.5352.1|Name=mRNA_L-elsbetiae_contig1843.5352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig1843:19850..21330+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGACAACCAGGGCATCAAGCTGGCGAAGGTGAACAAGGTGCTCGGCCG
CACCGGTAACACCGGTAACGTGACCCAGCAGGACAACCAGGGCATCAAGC
TGGCGAAGGTGAACAAGGTGCTCGGCCGCACCGGTAACACCGGTAACGTG
ACCCAGGTGCGCGTGGAGTTCTTGGATGACCCGACCCGTTCCATCATCCG
CAACGTCAAGGGCCCCGTTCGCGAGGGCGACATCCTCTGCCTCCTCGAGT
GGGAGCGCGAGGCCCGCCGTCTGAGATAGGTGCGCGTGGAGTTCTTGGAT
GACCCGACCCGTTCCATCATCCGCAACGTCAAGGGCCCCGTTCGCGAGGG
CGACATCCTCTGCCTCCTCGAGTGGGAGCGCGAGGCCCGCCGTCTGAGAT
AG
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