Homology
BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Match:
D8LLR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR3_ECTSI)
HSP 1 Score: 265 bits (678), Expect = 3.860e-85
Identity = 137/172 (79.65%), Postives = 158/172 (91.86%), Query Frame = 2
Query: 35 MARFSAFAFLAIFTSATSAFMTPLAGAQLGRRAVSANVATTRMSAAPA--TAAPTAADLRKMAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLEMMGDTSNLGEKGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKKDAWDYNVNTPLKPVKPVYSSK 544
MARFSAFAFLAIFTSA +AF+TPLAG Q+GRR+ SANVATTRMSA+PA TA PTA +L+ MA +CQEDGCSVETV+ LL+QLK+KKKEL+MQLVTVDDVL +MGD+S+L EKGELEKL+EAVGRVFSTNDG+DYIP+PTGYSGEVNK++KDAWDYNVNTPLKPVKPVY +
Sbjct: 1 MARFSAFAFLAIFTSAATAFVTPLAGVQMGRRSASANVATTRMSASPAPMTAPPTAQELKDMALSCQEDGCSVETVSTLLNQLKTKKKELEMQLVTVDDVLTIMGDSSSLAEKGELEKLVEAVGRVFSTNDGTDYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKKE 172
BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Match:
A0A7S0LGX7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGX7_9EUKA)
HSP 1 Score: 55.5 bits (132), Expect = 1.020e-5
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 2
Query: 212 MAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLEMMGDTSNLGE--KGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKK 481
+A+AC ++GCSV+TV +L+ +LK + K L ++ V +L + S + E K E+EKL+ A R FS +G ++ P GYS + + K
Sbjct: 55 VAKACLDEGCSVDTVDDLITELKEESKALTSRMQAVLILLGRLEALSGMPEANKSEIEKLVGAASRSFSVVEGFEFKGEPLGYSLKPSMRNK 146
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.86e-85 / Id = 79.65 Expect = 1.02e-5 / Id = 35.87 Sequence D8LLR3_ECTSI A0A7S0LGX7_9EUKA
Match Name E-value Identity Description
D8LLR3_ECTSI 3.860e-85 79.65 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0LGX7_9EUKA 1.020e-5 35.87 Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category chloroplast
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-04_004800.1
Exons 4
Model size 1196
Cds size 516
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815766.807965-UTR-L-elsbetiae_contig184:24720..24754 1622815766.807965-UTR-L-elsbetiae_contig184:24720..24754 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig184 24721..24754 +
1691683088.7288055-UTR-L-elsbetiae_contig184:24720..24754 1691683088.7288055-UTR-L-elsbetiae_contig184:24720..24754 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig184 24721..24754 +
1622815766.8719544-UTR-L-elsbetiae_contig184:28638..29284 1622815766.8719544-UTR-L-elsbetiae_contig184:28638..29284 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig184 28639..29284 +
1691683088.773966-UTR-L-elsbetiae_contig184:28638..29284 1691683088.773966-UTR-L-elsbetiae_contig184:28638..29284 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig184 28639..29284 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815766.824042-CDS-L-elsbetiae_contig184:24754..24913 1622815766.824042-CDS-L-elsbetiae_contig184:24754..24913 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 24755..24913 +
1691683088.7379174-CDS-L-elsbetiae_contig184:24754..24913 1691683088.7379174-CDS-L-elsbetiae_contig184:24754..24913 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 24755..24913 +
1622815766.8370001-CDS-L-elsbetiae_contig184:25972..26080 1622815766.8370001-CDS-L-elsbetiae_contig184:25972..26080 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 25973..26080 +
1691683088.747956-CDS-L-elsbetiae_contig184:25972..26080 1691683088.747956-CDS-L-elsbetiae_contig184:25972..26080 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 25973..26080 +
1622815766.8490918-CDS-L-elsbetiae_contig184:27997..28168 1622815766.8490918-CDS-L-elsbetiae_contig184:27997..28168 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 27998..28168 +
1691683088.756167-CDS-L-elsbetiae_contig184:27997..28168 1691683088.756167-CDS-L-elsbetiae_contig184:27997..28168 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 27998..28168 +
1622815766.8619974-CDS-L-elsbetiae_contig184:28560..28638 1622815766.8619974-CDS-L-elsbetiae_contig184:28560..28638 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 28561..28638 +
1691683088.7648983-CDS-L-elsbetiae_contig184:28560..28638 1691683088.7648983-CDS-L-elsbetiae_contig184:28560..28638 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig184 28561..28638 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig184.5337.1
>prot_L-elsbetiae_contig184.5337.1 ID=prot_L-elsbetiae_contig184.5337.1|Name=mRNA_L-elsbetiae_contig184.5337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MARFSAFAFLAIFTSATSAFMTPLAGAQLGRRAVSANVATTRMSAAPATA APTAADLRKMAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLE MMGDTSNLGEKGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKKD AWDYNVNTPLKPVKPVYSSKE* back to top mRNA from alignment at L-elsbetiae_contig184:24721..29284+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig184.5337.1 ID=mRNA_L-elsbetiae_contig184.5337.1|Name=mRNA_L-elsbetiae_contig184.5337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4564bp|location=Sequence derived from alignment at L-elsbetiae_contig184:24721..29284+ (Laminarionema elsbetiae ELsaHSoW15)CCGAAACAACGACAACAGCTCATCTCATCGCATC ATGGCTCGTTTCTCTG
CCTTCGCGTTCTTGGCCATCTTCACATCCGCCACGTCGGCCTTCATGACA
CCCCTTGCCGGCGCTCAACTCGGCAGGAGGGCTGTCAGCGCAAACGTGGC
CACAACGCGCATGAGTGCCGCACCTGCTACTGCAGCACCCACG GTGAGAC
AAGCAGAGAGATGCTCCAGAGTGAGAGAGAAAGAGCCAGAGAGGAAACAT
AGCCGGGGAGGTGCACGCATCTTTTCCCCCTTTGACTTGGGGAGATTATT
TTTCCCCCAGCACCCAAAACATGAAAATTGCATGGGTGCCAGATGCGCTT
TTTGGGTGCAGAGAGAGAGGGGGCAGCTGTCCACGATGTACGGTCGCTTC
TGTCTCTCGGATCAATCAACATGAGCAACGATTTCGTTGCTTGTCCAAGT
CACTTCCTGGGGTGGAACCTGCCTGGCATGTTGTATGTCAGGGATGTCAC
AATACGAGGTCGACCGGCGCCTACTGAGAGTTCAACCAAAAGGAGTGTGC
TGTTGTATTGATTCCGGGCTGTGTGTGTGTGTGTGTGTGTCTGTGTGATT
TGAACGAAGAACGAGCCCAGAGAACGAACGTGACTGGTAGTGGACCGCAG
GGGGGCTCCCTAACGAAATGACTCTGGGTTTCACGACAAAACGACACACG
GACCGCCCTTGCATGTAGACAGCATAGCATCGCTGCTATGTAGTCTCTCG
GACGCGAGAAGTACAACATACGTCACCAGGGGCGAGTTGATTCTTCTCGA
AAGCTTAAAAGCTTCCATTTTTTTTCAGCGTTGGTACATGGGTACATACG
TTAGTGATATAAATAGTAGTCCAAGCGTGTGCTCCAAGTCCCGAAGGCGC
CTATGTGGCCCTGCCCTCTAGATATCTCGTATATATATATATCTGCCACT
CGGCGGCCAAGTGCAAAGCGCGCTCACGCCGCAGCTCCGTTTGTTTCTTG
GGTCTGAAATATTAATATTCCCGCCACAAGTTCACGTTGTTGAGTATGTA
AACCTGAGTACAGATGTATGGTAGTGTTTACCATCAAGTCACTCCTTGTT
TTGCACACCTTTCTCCCTTGGCTGACTTTTTTGCACCAACACGCACACTC
ACACGCGTACGTACAATCCCCTTTTCGCGATCGTGGTGTCTGCCTTTTAT
GTTGCTTCGCCCCCTCTCCTCCCCTCTTTTCATATTGATCCTTTGTTCCC
AGGCGGCGGACTTGAGGAAAATGGCGGAGGCTTGCCAGGAAGACGGGTGC
TCGGTGGAGACCGTCGCCAACCTGTTGGACCAGCTGAAGTCCAAGAAGAA
GGAGCTCCAG GTATGTCTCGAGTTCGCACGTACATACAGATGCACATTCC
GTCACGGGTCGCAAATTCAACCAAATCAGCAAGCGGATAGCGTCATCAGG
TGCATAACTTCGTTCGTAGTAACTTCTACATGACACACAGAGAGAGATTG
CCGAGGGGTGTGTATATATGTCCAAACATAGTTTACTTCCGCTCGCGACG
CTGAGAAGATGGAGTTGTAGACTCCGGAGCGTACAGCTGAAGCAAAAGCA
CAAGTACATGTAATAAATAAATACCCGAGGGTGGAAACCGCACCCTGCGT
AAGAGTGCTGCTGACCACGACGGGCCTCGTCAAATTGGTGGACATACATG
TAACCGCGTTTACCTTTTACCCGGTGGTGCAATAGCACTTTGATGGCTTG
GAGTCTTCCCTCTGGAGTTGACCGCTTCGCAAGTTAACAAGCGGAAGGAG
CTTCGTTCGGGAAGTATGTACGTTTCGGATTGAACCGTCTTTCGAAATAC
CCCCCCCCCCCCCTCGCGCACCTCATCGTTGTGTTGCCTGTGCACCGCCG
AGCGGAAACTCACCGGATCCAGCACACCACAGGACTTGGCTTCGAAACAT
TCGAGCCAACAGCCAACTTTACAATGGCAGCAGTCCCGTGCATGTGAAAA
CCGTCCTATACATGTATACATATATCGCCGAAAGTAGGAGTACTTACCCA
AGTACATGTACGACACTCCACCGGATAGGCAACGAGTGCCCGACGGGGCC
TGGCGTATCTATCTGGAGCACGCCTGATGGCTGCCCAAGTGGAACGCAAG
TACGCGTGTGCAGAACTTGTCTCTTTTCGTTTCTTCGGTTGGAACCGCTG
TTTCCAACACGTTGGACGAGCTCAAACATACATAGCCAAGATGCAAGCAG
CTCTCCCTGTCTAGCTGTCCCCGGTCACATGTGACCGGGGTATTTCCCGC
ACCCATGGAAGATCAGATCGTGGGCGCACAGAGTAGCCTTATCAAAAACG
TTGTTTTTCGTTTCGATTGGGGGTTTCTGGGGCGACGGTGTACCAAAAGT
ACGGTGGCTGCCGTAACCAGGTACCGAAATTACGGGAGAGCTGAGCTGTT
CGCGTACGCAACCACGTCCTCACTTGTGTTCGTTCCTCCGTTGGGGGCGC
GTTACACGGTTTGTGGCATGTTTGCTCCGCAAAAAAATTACAAATAATCA
CATACAGATGGTCACCCAATTCCACTCATGAGACACCACGCAATCTTCTC
GTGTCTCGGAGCATACGCAGGGGTTGGCCTGTTTTTTACACGCAGGGGAC
TTCGTGTCGCGTGCGAAGAGCCGGAAAATGTCTCCTCGTACTTTTGAGTT
ATTTCGCTAAGGGTTGTTCTTGGCATATGTGTGATGTATGCGCTTTCGCG
CATGTGTGCATCATGGAGGATCAGCAAAGTGCACACGCTCTCACTTTTTT
AATGATGTTCAAACGATCTATTTATTGTAGAAGAAAACGTTCGAAGCGGA
CCTAGGAACGAGGGACCGTAAAATTGAGACAGCGACAAAACGCCTAAAAT
GACACCGGTTGACCCAACGCGTAGACTTGAACACGAGCAGCCGTTTTCTC
CCCACCAGGACAAGGAGCAAAAAGATAAAAAGGTCCCGTACGCTACCTCT
TTCAGACCCCCACCTCCCAATGCAACCTGCAGGGACGCTCAAATAATTCG
GTACTCGACATGTACATGTGTGTGTGTGTGTGTGTGTTGATCCTGCATGC
ACACATACATACCTGAATACTCGCGGTATCCTCGACGACTCAATTCACGG
CATGTTGCTCTATAGTTTTGGCAGTGCTGACTTTGACCAGCCTGTCCGCA
CCTTCCCCGCGCCCAACCCCCCCCCCCCTTGCCTCCCCCCCCCATTCCCC
CCCGGCCTTTTGGTTTGGGCATTCCAGATGCAACTGGTGACCGTGGACGA
CGTCCTTGAGATGATGGGCGACACCTCCAACTTGGGAGAGAAGGGCGAGC
TGGAGAAGCTCATCGAGGCCGTTGGCCGCGTTTTCTCGACCAACGACGGC
TCGGACTACATCCCGTACCCCACTGGCTACTCCGGGGAGGTCAACAAG GT
GTGTACGCGCGCGCACGCACACAGTGCGTACTGTATTCTGACTGAACAGT
GTTCACAGAATGCCTCTCCGATCATCCAGCGGAATGAATATTAAGTTTTA
GTTTTTTCTCTTGACGTAGCCGTCGCCCTCGCTTTTGCCTGCTGTGCCCC
CGTAGCAGCCACGGCAAGTCTGTCCACGTCTGTTCGGGTCACCACGACAC
ACCATCTCTTCTGCCCCTTTACCCCCATTCCCCTCGGTTGGGCGGCCGGC
CCCACGTCCGTCGTGATAAAACCCCGGAGTACACTTTGACAACGCGTATT
ATTTCTCGTTGCTGACTGTCATGTTCGGCGTTGCTGGTGTCGCTTCTCTT
CTTTTCACCTCCCTGGTGACCATGAACTCGAAAACCACAGGAGAAGAAGG
ACGCGTGGGACTACAACGTCAACACCCCGTTGAAGCCCGTGAAGCCCGTT
TACAGCAGCAAGGAGTAG ATGAGGCACCACGAACTCGTACATAGCACCCT
TCTCCTTCGAAATATTATGGCTCCTACATAATAGTTGTGTTAGATTGGAT
GCAAGAGAGGGCGCCGGTGCGAACTCCGTGTGCATACCTGTAAGTGGTAC
ACATGTACAAGTCGGCCCAGACTCTCGGAGATCAAACCTGGGGTGTTGGT
AGCTTGGTGAGTTTCCGCTTGGGTGCGTATCCAGCGCAGAGGGAGTTTTG
GAGGATGGTTGCACGCGGATGGCGTTTTTGAGCAGGGTTTGTAGCCGTAG
ACGGCTCGGCTTGCTCGATTGCTGCTCGGTTGCCGCGTCTTGTAGACCGT
AGGTACATAAGAGCGTTTTTTTGGCGGGGGGGAGGCGGGGAGGGGGGTTG
CTTGATTGACAAGGGTGCCTGCGGGGTGGCCGCCGAAGGCACGGTGATAG
ACTTAGAATACCTTTGGAACTCCCCAACTGTTTTTTTTTCTTCGATCCAT
GCAGGTACTAGAAATGTGGTTCATGTGATTTTTCAGATTCAGGCCATCAT
CTTCACAGCAGTATCTGCATACAAATAAGCAGTAGTACATCATAGTAGGT
GTTCGGTCGCCAAATGTGCCCGAAGATAGATGCAGCGATACTCACTTTGA
GTGCCTCCGGGGTG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig184:24721..29284+
>mRNA_L-elsbetiae_contig184.5337.1 ID=mRNA_L-elsbetiae_contig184.5337.1|Name=mRNA_L-elsbetiae_contig184.5337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig184:24721..29284+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCTCGTTTCTCTGCCTTCGCGTTCTTGGCCATCTTCACATCCGCCAC GTCGGCCTTCATGACACCCCTTGCCGGCGCTCAACTCGGCAGGAGGGCTG TCAGCGCAAACGTGGCCACAACGCGCATGAGTGCCGCACCTGCTACTGCA GCACCCACGATGGCTCGTTTCTCTGCCTTCGCGTTCTTGGCCATCTTCAC ATCCGCCACGTCGGCCTTCATGACACCCCTTGCCGGCGCTCAACTCGGCA GGAGGGCTGTCAGCGCAAACGTGGCCACAACGCGCATGAGTGCCGCACCT GCTACTGCAGCACCCACGGCGGCGGACTTGAGGAAAATGGCGGAGGCTTG CCAGGAAGACGGGTGCTCGGTGGAGACCGTCGCCAACCTGTTGGACCAGC TGAAGTCCAAGAAGAAGGAGCTCCAGGCGGCGGACTTGAGGAAAATGGCG GAGGCTTGCCAGGAAGACGGGTGCTCGGTGGAGACCGTCGCCAACCTGTT GGACCAGCTGAAGTCCAAGAAGAAGGAGCTCCAGATGCAACTGGTGACCG TGGACGACGTCCTTGAGATGATGGGCGACACCTCCAACTTGGGAGAGAAG GGCGAGCTGGAGAAGCTCATCGAGGCCGTTGGCCGCGTTTTCTCGACCAA CGACGGCTCGGACTACATCCCGTACCCCACTGGCTACTCCGGGGAGGTCA ACAAGATGCAACTGGTGACCGTGGACGACGTCCTTGAGATGATGGGCGAC ACCTCCAACTTGGGAGAGAAGGGCGAGCTGGAGAAGCTCATCGAGGCCGT TGGCCGCGTTTTCTCGACCAACGACGGCTCGGACTACATCCCGTACCCCA CTGGCTACTCCGGGGAGGTCAACAAGGAGAAGAAGGACGCGTGGGACTAC AACGTCAACACCCCGTTGAAGCCCGTGAAGCCCGTTTACAGCAGCAAGGA GTAGGAGAAGAAGGACGCGTGGGACTACAACGTCAACACCCCGTTGAAGC CCGTGAAGCCCGTTTACAGCAGCAAGGAGTAG back to top