mRNA_L-elsbetiae_contig18363.5325.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18363.5325.1
Unique NamemRNA_L-elsbetiae_contig18363.5325.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A816G1J0_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A816G1J0_9BILA)

HSP 1 Score: 124 bits (310), Expect = 3.460e-30
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKLS 414
            +  T++  + + + P+F+FR+  +T+AV   + + +EDF+L NQA TERLNSLLEP  SF++TEDI+ +           I + PGFQ+FATVH G+ S  + ISPATRSRFTEI V+ Y D E + VL   ++++LS
Sbjct:  156 VWNTISSQSFNRNKPIFLFRDAAVTRAVKLGQPILIEDFDLANQAATERLNSLLEPTPSFSVTEDITCTNTN--------IDILPGFQLFATVHHGSESEPIKISPATRSRFTEIRVEGYDDNEAKEVLLEELKRRLS 285
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BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A815MED5_9BILA (Hypothetical protein (Fragment) n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A815MED5_9BILA)

HSP 1 Score: 124 bits (310), Expect = 3.950e-30
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKLS 414
            +  T++  + + + P+F+FR+  +T+AV   + + +EDF+L NQA TERLNSLLEP  SF++TEDI+ +           I + PGFQ+FATVH G+ S  + ISPATRSRFTEI V+ Y D E + VL   ++++LS
Sbjct: 2310 VWNTISSQSFNRNKPIFLFRDAAVTRAVKLGQPILIEDFDLANQAATERLNSLLEPTPSFSVTEDITCTNTN--------IDILPGFQLFATVHHGSESEPIKISPATRSRFTEIRVEGYDDNEAKEVLLEELKRRLS 2439
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BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A822HD47_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822HD47_9BILA)

HSP 1 Score: 115 bits (288), Expect = 8.860e-30
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:    7 QTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDI-SRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEK 405
            + LT  N D + P+F+F +GP+T A     ++FLED +LP+QAV ERLNS+LEP  +F LTEDI S +E G+       I +   FQ+FA+VH+  A   L +SPATRSRFTEI +  Y + +L+ ++ S + K
Sbjct:    1 ERLTSRNFDRTKPIFLFNDGPVTMAAKRGGILFLEDLDLPSQAVIERLNSMLEPSPTFALTEDITSHAEKGQ-----LDITLSNQFQIFASVHQEQAHQILKLSPATRSRFTEIYIPAYVERDLQILVKSELNK 129
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BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A821PQW4_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821PQW4_9BILA)

HSP 1 Score: 122 bits (307), Expect = 9.990e-30
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKL 411
            I  T++  + + + P+F+FR+  +T+AV   + + +EDF+L NQA TERLNSLLEP   F++TEDI+ S           I V PGFQ+FATVH G+ S  + ISPA RSRFTEI V+ Y+D E ++VL   ++++L
Sbjct: 2305 IWNTISSPSFNRNKPIFLFRDAAVTRAVKLGQPILIEDFDLANQAATERLNSLLEPNPCFSVTEDITCSNTT--------IDVLPGFQLFATVHHGSESEPIKISPAARSRFTEIRVEGYSDEEAKSVLSQELKRRL 2433
[Close]
BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A821SQ29_9BILA (Hypothetical protein (Fragment) n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821SQ29_9BILA)

HSP 1 Score: 122 bits (307), Expect = 1.010e-29
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKL 411
            I  T++  + + + P+F+FR+  +T+AV   + + +EDF+L NQA TERLNSLLEP   F++TEDI+ S           I V PGFQ+FATVH G+ S  + ISPA RSRFTEI V+ Y+D E ++VL   ++++L
Sbjct: 2305 IWNTISSPSFNRNKPIFLFRDAAVTRAVKLGQPILIEDFDLANQAATERLNSLLEPNPCFSVTEDITCSNTT--------IDVLPGFQLFATVHHGSESEPIKISPAARSRFTEIRVEGYSDEEAKSVLSQELKRRL 2433
[Close]
BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A818VKT7_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818VKT7_9BILA)

HSP 1 Score: 122 bits (307), Expect = 1.010e-29
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKL 411
            I  T++  + + + P+F+FR+  +T+AV   + + +EDF+L NQA TERLNSLLEP   F++TEDI+ S           I V PGFQ+FATVH G+ S  + ISPA RSRFTEI V+ Y+D E ++VL   ++++L
Sbjct: 2305 IWNTISSPSFNRNKPIFLFRDAAVTRAVKLGQPILIEDFDLANQAATERLNSLLEPNPCFSVTEDITCSNTT--------IDVLPGFQLFATVHHGSESEPIKISPAARSRFTEIRVEGYSDEEAKSVLSQELKRRL 2433
[Close]
BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A814VKC8_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814VKC8_9BILA)

HSP 1 Score: 122 bits (307), Expect = 1.010e-29
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKL 411
            I  T++  + + + P+F+FR+  +T+AV   + + +EDF+L NQA TERLNSLLEP   F++TEDI+ S           I V PGFQ+FATVH G+ S  + ISPA RSRFTEI V+ Y+D E ++VL   ++++L
Sbjct: 2305 IWNTISSPSFNRNKPIFLFRDAAVTRAVKLGQPILIEDFDLANQAATERLNSLLEPNPCFSVTEDITCSNTT--------IDVLPGFQLFATVHHGSESEPIKISPAARSRFTEIRVEGYSDEEAKSVLSQELKRRL 2433
[Close]
BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A818X7R0_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818X7R0_9BILA)

HSP 1 Score: 122 bits (306), Expect = 1.360e-29
Identity = 63/139 (45.32%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSED-GKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKLS 414
            I   L     D + P+F+F++GP+T A     ++FLED +LP+QAV ERLNS+LEP  +F LTEDI+ S   G G  G   + +   FQVFA+VH+ +    L +SPATRSRFTEI + +YT  +L+ ++ S +++KLS
Sbjct: 2104 IWNKLKDPGFDRTKPIFLFQDGPVTVATKQGSILFLEDLDLPSQAVIERLNSMLEPTPTFALTEDITTSNSTGDGNRGQLDVQLSSNFQVFASVHQDHEYQLLKLSPATRSRFTEIKIPKYTLEDLKLIVESELKRKLS 2242
[Close]
BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A818TNX1_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818TNX1_9BILA)

HSP 1 Score: 122 bits (306), Expect = 1.370e-29
Identity = 63/139 (45.32%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSED-GKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKLS 414
            I   L     D + P+F+F++GP+T A     ++FLED +LP+QAV ERLNS+LEP  +F LTEDI+ S   G G  G   + +   FQVFA+VH+ +    L +SPATRSRFTEI + +YT  +L+ ++ S +++KLS
Sbjct: 2195 IWNKLKDPGFDRTKPIFLFQDGPVTVATKQGSILFLEDLDLPSQAVIERLNSMLEPTPTFALTEDITTSNSTGDGNRGQLDVQLSSNFQVFASVHQDHEYQLLKLSPATRSRFTEIKIPKYTLEDLKLIVESELKRKLS 2333
[Close]
BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Match: A0A818VKI1_9BILA (Hypothetical protein n=12 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818VKI1_9BILA)

HSP 1 Score: 122 bits (306), Expect = 1.380e-29
Identity = 63/139 (45.32%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERLNSLLEPERSFTLTEDISRSED-GKGGIGGQGIPVPPGFQVFATVHRGNASSRLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKLS 414
            I   L     D + P+F+F++GP+T A     ++FLED +LP+QAV ERLNS+LEP  +F LTEDI+ S   G G  G   + +   FQVFA+VH+ +    L +SPATRSRFTEI + +YT  +L+ ++ S +++KLS
Sbjct: 2136 IWNKLKDPGFDRTKPIFLFQDGPVTVATKQGSILFLEDLDLPSQAVIERLNSMLEPTPTFALTEDITTSNSTGDGNRGQLDVQLSSNFQVFASVHQDHEYQLLKLSPATRSRFTEIKIPKYTLEDLKLIVESELKRKLS 2274
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18363.5325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A816G1J0_9BILA3.460e-3045.65Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]
A0A815MED5_9BILA3.950e-3045.65Hypothetical protein (Fragment) n=2 Tax=Rotaria so... [more]
A0A822HD47_9BILA8.860e-3045.52Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A821PQW4_9BILA9.990e-3045.99Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A821SQ29_9BILA1.010e-2945.99Hypothetical protein (Fragment) n=2 Tax=Rotaria sp... [more]
A0A818VKT7_9BILA1.010e-2945.99Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]
A0A814VKC8_9BILA1.010e-2945.99Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A818X7R0_9BILA1.360e-2945.32Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A818TNX1_9BILA1.370e-2945.32Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A818VKI1_9BILA1.380e-2945.32Hypothetical protein n=12 Tax=Rotaria sp. Silwood1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18363contigL-elsbetiae_contig18363:2230..2643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue7.3e-15
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.3218558-CDS-L-elsbetiae_contig18363:2229..26431622815765.3218558-CDS-L-elsbetiae_contig18363:2229..2643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18363 2230..2643 -
1691683087.9904208-CDS-L-elsbetiae_contig18363:2229..26431691683087.9904208-CDS-L-elsbetiae_contig18363:2229..2643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18363 2230..2643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18363.5325.1prot_L-elsbetiae_contig18363.5325.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18363 2230..2643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18363.5325.1

>prot_L-elsbetiae_contig18363.5325.1 ID=prot_L-elsbetiae_contig18363.5325.1|Name=mRNA_L-elsbetiae_contig18363.5325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
ILQTLTKANIDSSDPLFVFREGPLTKAVIASKVVFLEDFNLPNQAVTERL
NSLLEPERSFTLTEDISRSEDGKGGIGGQGIPVPPGFQVFATVHRGNASS
RLNISPATRSRFTEIAVQEYTDAELRAVLHSVIEKKLS
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mRNA from alignment at L-elsbetiae_contig18363:2230..2643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18363.5325.1 ID=mRNA_L-elsbetiae_contig18363.5325.1|Name=mRNA_L-elsbetiae_contig18363.5325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig18363:2230..2643- (Laminarionema elsbetiae ELsaHSoW15)
ATATTGCAGACGCTAACGAAAGCAAACATCGATTCGTCAGATCCGCTATT
TGTTTTCCGAGAGGGGCCCCTCACCAAGGCAGTGATTGCGAGCAAAGTCG
TCTTCCTCGAAGACTTTAACCTGCCGAACCAAGCTGTCACGGAGCGACTG
AACAGCCTTCTAGAGCCCGAGCGGTCGTTTACTCTGACGGAGGATATTTC
TCGGTCAGAAGACGGCAAGGGAGGCATTGGCGGTCAAGGCATCCCAGTTC
CCCCGGGCTTTCAAGTTTTTGCGACTGTGCATCGCGGCAATGCGTCATCG
CGGTTAAACATCAGCCCGGCAACAAGATCTCGATTCACAGAGATAGCCGT
CCAGGAATACACGGATGCTGAGCTGCGAGCAGTTCTCCATTCGGTTATCG
AGAAGAAGCTCTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18363:2230..2643-

>mRNA_L-elsbetiae_contig18363.5325.1 ID=mRNA_L-elsbetiae_contig18363.5325.1|Name=mRNA_L-elsbetiae_contig18363.5325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig18363:2230..2643- (Laminarionema elsbetiae ELsaHSoW15)
ATATTGCAGACGCTAACGAAAGCAAACATCGATTCGTCAGATCCGCTATT
TGTTTTCCGAGAGGGGCCCCTCACCAAGGCAGTGATTGCGAGCAAAGTCG
TCTTCCTCGAAGACTTTAACCTGCCGAACCAAGCTGTCACGGAGCGACTG
AACAGCCTTCTAGAGCCCGAGCGGTCGTTTACTCTGACGGAGGATATTTC
TCGGTCAGAAGACGGCAAGGGAGGCATTGGCGGTCAAGGCATCCCAGTTC
CCCCGGGCTTTCAAGTTTTTGCGACTGTGCATCGCGGCAATGCGTCATCG
CGGTTAAACATCAGCCCGGCAACAAGATCTCGATTCACAGAGATAGCCGT
CCAGGAATACACGGATGCTGAGCTGCGAGCAGTTCTCCATTCGGTTATCG
AGAAGAAGCTCTCTATATTGCAGACGCTAACGAAAGCAAACATCGATTCG
TCAGATCCGCTATTTGTTTTCCGAGAGGGGCCCCTCACCAAGGCAGTGAT
TGCGAGCAAAGTCGTCTTCCTCGAAGACTTTAACCTGCCGAACCAAGCTG
TCACGGAGCGACTGAACAGCCTTCTAGAGCCCGAGCGGTCGTTTACTCTG
ACGGAGGATATTTCTCGGTCAGAAGACGGCAAGGGAGGCATTGGCGGTCA
AGGCATCCCAGTTCCCCCGGGCTTTCAAGTTTTTGCGACTGTGCATCGCG
GCAATGCGTCATCGCGGTTAAACATCAGCCCGGCAACAAGATCTCGATTC
ACAGAGATAGCCGTCCAGGAATACACGGATGCTGAGCTGCGAGCAGTTCT
CCATTCGGTTATCGAGAAGAAGCTCTCT
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