mRNA_L-elsbetiae_contig1836.5324.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1836.5324.1
Unique NamemRNA_L-elsbetiae_contig1836.5324.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1836.5324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1836contigL-elsbetiae_contig1836:19318..20034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size717
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1836.5324.1prot_L-elsbetiae_contig1836.5324.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1836 19503..19883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.0168254-UTR-L-elsbetiae_contig1836:19317..195021622815765.0168254-UTR-L-elsbetiae_contig1836:19317..19502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1836 19318..19502 +
1691683087.7501757-UTR-L-elsbetiae_contig1836:19317..195021691683087.7501757-UTR-L-elsbetiae_contig1836:19317..19502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1836 19318..19502 +
1622815765.0435057-UTR-L-elsbetiae_contig1836:19883..200341622815765.0435057-UTR-L-elsbetiae_contig1836:19883..20034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1836 19884..20034 +
1691683087.765918-UTR-L-elsbetiae_contig1836:19883..200341691683087.765918-UTR-L-elsbetiae_contig1836:19883..20034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1836 19884..20034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.0288892-CDS-L-elsbetiae_contig1836:19502..198831622815765.0288892-CDS-L-elsbetiae_contig1836:19502..19883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1836 19503..19883 +
1691683087.7581763-CDS-L-elsbetiae_contig1836:19502..198831691683087.7581763-CDS-L-elsbetiae_contig1836:19502..19883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1836 19503..19883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1836.5324.1

>prot_L-elsbetiae_contig1836.5324.1 ID=prot_L-elsbetiae_contig1836.5324.1|Name=mRNA_L-elsbetiae_contig1836.5324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MYVFRRSFGGLASPCVFRGERTALCICSAAAFLVRARAHVYNFWPGTIRR
TKEYMGGAVVSVVSFCVGISHTRRRCLLFFVFCCMCWFVVLRVLCVFFRI
WTLDRSLGAGAIHHEEKIVLWSTKVF*
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mRNA from alignment at L-elsbetiae_contig1836:19318..20034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1836.5324.1 ID=mRNA_L-elsbetiae_contig1836.5324.1|Name=mRNA_L-elsbetiae_contig1836.5324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=717bp|location=Sequence derived from alignment at L-elsbetiae_contig1836:19318..20034+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGGGGGGTATTGGACGATTGGTTGATCTGTCGTCGCCCCACCCCCG
CGCCTCAACCCTACTGCTGCATTGGTTGTGGTCGCCGCGAGCAAGCCCCC
ACGCTTTCTTGTCGAGAGCTGTGTTGGCTGTCGATCGCGCTACTACTGTA
GGGTTGATTTGCTTGTTTGATGTATTTATTTATAAATGTATGTATTTCGA
CGTTCTTTCGGTGGGCTTGCTTCACCGTGTGTGTTTCGTGGGGAACGTAC
TGCCTTGTGTATTTGTAGCGCTGCTGCTTTTCTTGTGCGCGCGCGCGCAC
ACGTGTACAACTTTTGGCCAGGAACGATTCGGCGTACAAAAGAGTACATG
GGAGGGGCGGTGGTCTCCGTAGTATCGTTTTGCGTAGGAATTAGTCACAC
ACGACGACGGTGTTTATTGTTTTTTGTATTTTGTTGCATGTGCTGGTTTG
TTGTTTTGCGAGTTTTATGTGTTTTTTTTCGGATTTGGACTCTGGACCGA
TCCCTTGGGGCGGGCGCCATCCACCACGAAGAAAAAATTGTCCTTTGGAG
CACAAAAGTGTTTTGATGATAAACAAAACGCGTGCAAAGCATCAAGCTCG
TCTTCGCTTATCCCGGGGAAGCACCTTCTCCGCCGCTCGATCGTTGAGGA
GCATTTCAGACCCATGCAAGTTAGCCCAGTGGGCCTTGGAGCAAACATGT
CAGGCTGTCGTACATAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1836:19318..20034+

>mRNA_L-elsbetiae_contig1836.5324.1 ID=mRNA_L-elsbetiae_contig1836.5324.1|Name=mRNA_L-elsbetiae_contig1836.5324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1836:19318..20034+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTATTTCGACGTTCTTTCGGTGGGCTTGCTTCACCGTGTGTGTT
TCGTGGGGAACGTACTGCCTTGTGTATTTGTAGCGCTGCTGCTTTTCTTG
TGCGCGCGCGCGCACACGTGTACAACTTTTGGCCAGGAACGATTCGGCGT
ACAAAAGAGTACATGGGAGGGGCGGTGGTCTCCGTAGTATCGTTTTGCGT
AGGAATTAGTCACACACGACGACGGTGTTTATTGTTTTTTGTATTTTGTT
GCATGTGCTGGTTTGTTGTTTTGCGAGTTTTATGTGTTTTTTTTCGGATT
TGGACTCTGGACCGATCCCTTGGGGCGGGCGCCATCCACCACGAAGAAAA
AATTGTCCTTTGGAGCACAAAAGTGTTTTGAATGTATGTATTTCGACGTT
CTTTCGGTGGGCTTGCTTCACCGTGTGTGTTTCGTGGGGAACGTACTGCC
TTGTGTATTTGTAGCGCTGCTGCTTTTCTTGTGCGCGCGCGCGCACACGT
GTACAACTTTTGGCCAGGAACGATTCGGCGTACAAAAGAGTACATGGGAG
GGGCGGTGGTCTCCGTAGTATCGTTTTGCGTAGGAATTAGTCACACACGA
CGACGGTGTTTATTGTTTTTTGTATTTTGTTGCATGTGCTGGTTTGTTGT
TTTGCGAGTTTTATGTGTTTTTTTTCGGATTTGGACTCTGGACCGATCCC
TTGGGGCGGGCGCCATCCACCACGAAGAAAAAATTGTCCTTTGGAGCACA
AAAGTGTTTTGA
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