mRNA_L-elsbetiae_contig18341.5317.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18341.5317.1
Unique NamemRNA_L-elsbetiae_contig18341.5317.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18341.5317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18341contigL-elsbetiae_contig18341:770..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size508
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18341.5317.1prot_L-elsbetiae_contig18341.5317.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18341 876..1178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.6367786-UTR-L-elsbetiae_contig18341:769..8751622815764.6367786-UTR-L-elsbetiae_contig18341:769..875Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18341 770..875 +
1691683087.530974-UTR-L-elsbetiae_contig18341:769..8751691683087.530974-UTR-L-elsbetiae_contig18341:769..875Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18341 770..875 +
1622815764.658436-UTR-L-elsbetiae_contig18341:1178..12771622815764.658436-UTR-L-elsbetiae_contig18341:1178..1277Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18341 1179..1277 +
1691683087.5496683-UTR-L-elsbetiae_contig18341:1178..12771691683087.5496683-UTR-L-elsbetiae_contig18341:1178..1277Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18341 1179..1277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.6483793-CDS-L-elsbetiae_contig18341:875..11781622815764.6483793-CDS-L-elsbetiae_contig18341:875..1178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18341 876..1178 +
1691683087.5403786-CDS-L-elsbetiae_contig18341:875..11781691683087.5403786-CDS-L-elsbetiae_contig18341:875..1178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18341 876..1178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18341.5317.1

>prot_L-elsbetiae_contig18341.5317.1 ID=prot_L-elsbetiae_contig18341.5317.1|Name=mRNA_L-elsbetiae_contig18341.5317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MGRTHTPYIVDYLMLFGYLFTINALTPTFYPAQPLSARPAPSPHHGFFAA
RNSIQPKLSQAFVEFSSCAMPGLEPPLGVSASYVDANTKISIWTKRSSDQ
*
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mRNA from alignment at L-elsbetiae_contig18341:770..1277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18341.5317.1 ID=mRNA_L-elsbetiae_contig18341.5317.1|Name=mRNA_L-elsbetiae_contig18341.5317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=508bp|location=Sequence derived from alignment at L-elsbetiae_contig18341:770..1277+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCCGGTGTGCACCTCCTCCTGTGTGACCCCGGTTGGATCTAGTTGTAC
AGACAGATGCACTGCAAAGTTTAGTACGTCTCCCCTTGGGACTGTCGCCA
AAATAAATGGGAAGGACACACACACCGTACATAGTAGACTATCTAATGCT
CTTCGGTTACTTGTTCACGATCAATGCGTTGACGCCGACCTTTTATCCTG
CACAACCGCTTTCCGCGCGGCCCGCTCCGTCCCCACACCACGGTTTTTTT
GCAGCCAGGAACTCCATCCAGCCAAAGCTTTCGCAAGCGTTTGTCGAATT
CTCCTCGTGTGCCATGCCCGGTCTCGAGCCCCCACTTGGCGTAAGCGCCT
CGTACGTTGACGCCAATACAAAAATATCGATCTGGACAAAAAGATCGTCG
GATCAATAGATACACAGCCGGCGATTTTCGTGAGCTGGTCGTCGATCATG
GCGTGTTTCACCAACATCCTATCGTCATAAGCACGCAATATCGATCATGC
GGTCTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18341:770..1277+

>mRNA_L-elsbetiae_contig18341.5317.1 ID=mRNA_L-elsbetiae_contig18341.5317.1|Name=mRNA_L-elsbetiae_contig18341.5317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig18341:770..1277+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGGACACACACACCGTACATAGTAGACTATCTAATGCTCTTCGG
TTACTTGTTCACGATCAATGCGTTGACGCCGACCTTTTATCCTGCACAAC
CGCTTTCCGCGCGGCCCGCTCCGTCCCCACACCACGGTTTTTTTGCAGCC
AGGAACTCCATCCAGCCAAAGCTTTCGCAAGCGTTTGTCGAATTCTCCTC
GTGTGCCATGCCCGGTCTCGAGCCCCCACTTGGCGTAAGCGCCTCGTACG
TTGACGCCAATACAAAAATATCGATCTGGACAAAAAGATCGTCGGATCAA
TAGATGGGAAGGACACACACACCGTACATAGTAGACTATCTAATGCTCTT
CGGTTACTTGTTCACGATCAATGCGTTGACGCCGACCTTTTATCCTGCAC
AACCGCTTTCCGCGCGGCCCGCTCCGTCCCCACACCACGGTTTTTTTGCA
GCCAGGAACTCCATCCAGCCAAAGCTTTCGCAAGCGTTTGTCGAATTCTC
CTCGTGTGCCATGCCCGGTCTCGAGCCCCCACTTGGCGTAAGCGCCTCGT
ACGTTGACGCCAATACAAAAATATCGATCTGGACAAAAAGATCGTCGGAT
CAATAG
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