mRNA_L-elsbetiae_contig18338.5314.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18338.5314.1
Unique NamemRNA_L-elsbetiae_contig18338.5314.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18338.5314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18338contigL-elsbetiae_contig18338:1722..2533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size812
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18338.5314.1prot_L-elsbetiae_contig18338.5314.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18338 1779..2246 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.3626761-UTR-L-elsbetiae_contig18338:1721..17781622815764.3626761-UTR-L-elsbetiae_contig18338:1721..1778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18338 1722..1778 +
1691683087.2880957-UTR-L-elsbetiae_contig18338:1721..17781691683087.2880957-UTR-L-elsbetiae_contig18338:1721..1778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18338 1722..1778 +
1622815764.3832233-UTR-L-elsbetiae_contig18338:2246..25331622815764.3832233-UTR-L-elsbetiae_contig18338:2246..2533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18338 2247..2533 +
1691683087.3249815-UTR-L-elsbetiae_contig18338:2246..25331691683087.3249815-UTR-L-elsbetiae_contig18338:2246..2533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18338 2247..2533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.3734808-CDS-L-elsbetiae_contig18338:1778..22461622815764.3734808-CDS-L-elsbetiae_contig18338:1778..2246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18338 1779..2246 +
1691683087.3049424-CDS-L-elsbetiae_contig18338:1778..22461691683087.3049424-CDS-L-elsbetiae_contig18338:1778..2246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18338 1779..2246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18338.5314.1

>prot_L-elsbetiae_contig18338.5314.1 ID=prot_L-elsbetiae_contig18338.5314.1|Name=mRNA_L-elsbetiae_contig18338.5314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MYPEHGWALEEKAADQLMQTSQQKCQKSTDSPATYVCTLSMDGHSWTPHA
HLDPKPSVNKIPAEQQKYPQAPNEQEKTPERTTGTRHIYYLWWYLLLSQR
KSRDFSSTLRALWCLEIRKVQRRHPPPREPNPHAKPPISLECIGPATPRP
PQHLE*
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mRNA from alignment at L-elsbetiae_contig18338:1722..2533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18338.5314.1 ID=mRNA_L-elsbetiae_contig18338.5314.1|Name=mRNA_L-elsbetiae_contig18338.5314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=812bp|location=Sequence derived from alignment at L-elsbetiae_contig18338:1722..2533+ (Laminarionema elsbetiae ELsaHSoW15)
GATGCAAACGTCCCAACAAAAGTGCCAGAAATCGACTGATTCGCCGGCTA
CATATGTATGTACCCTGAGCATGGATGGGCACTCGAAGAGAAAGCTGCCG
ACCAACTGATGCAAACGTCCCAACAAAAGTGCCAGAAATCGACTGATTCG
CCGGCTACATATGTATGTACCCTGAGCATGGATGGGCACTCCTGGACTCC
GCACGCACACCTCGACCCCAAGCCATCTGTGAACAAAATTCCCGCTGAGC
AACAAAAATATCCGCAGGCGCCAAATGAACAAGAAAAAACTCCGGAGAGA
ACAACTGGCACGCGGCATATTTATTATTTATGGTGGTATCTGCTGCTAAG
CCAGCGTAAATCACGCGATTTTTCGTCGACGTTGAGAGCACTTTGGTGCT
TGGAAATTCGGAAAGTACAGAGAAGGCACCCGCCACCGCGAGAACCCAAC
CCACACGCCAAGCCTCCCATCTCGTTGGAATGCATCGGTCCCGCTACCCC
CCGCCCCCCACAACACCTCGAATGAAAATCTATGTGGAATTTCTTGAATT
CAACAGCACACCTTATGGAACAAATGAACCTGTGTTCTACTCAATGCCGC
CCGTTCTCTGCGCCGCGCAACCACGGGACCCCTCTACGAAGGCCAACGCG
TCGGGGGAAAGGGCCAAAGCCAGGTCGATGGCTTGGGTTATCGATACTCT
TCGAGGACCCAACACCCTACAAATGATTCGGCGGACCCCCCAAATAATAT
CATCGTCGACAGAAGACCTTGCTGGCGGGCGGGACGAGCCTTCCTTCTAT
TCTAATTTCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18338:1722..2533+

>mRNA_L-elsbetiae_contig18338.5314.1 ID=mRNA_L-elsbetiae_contig18338.5314.1|Name=mRNA_L-elsbetiae_contig18338.5314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig18338:1722..2533+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCCTGAGCATGGATGGGCACTCGAAGAGAAAGCTGCCGACCAACT
GATGCAAACGTCCCAACAAAAGTGCCAGAAATCGACTGATTCGCCGGCTA
CATATGTATGTACCCTGAGCATGGATGGGCACTCCTGGACTCCGCACGCA
CACCTCGACCCCAAGCCATCTGTGAACAAAATTCCCGCTGAGCAACAAAA
ATATCCGCAGGCGCCAAATGAACAAGAAAAAACTCCGGAGAGAACAACTG
GCACGCGGCATATTTATTATTTATGGTGGTATCTGCTGCTAAGCCAGCGT
AAATCACGCGATTTTTCGTCGACGTTGAGAGCACTTTGGTGCTTGGAAAT
TCGGAAAGTACAGAGAAGGCACCCGCCACCGCGAGAACCCAACCCACACG
CCAAGCCTCCCATCTCGTTGGAATGCATCGGTCCCGCTACCCCCCGCCCC
CCACAACACCTCGAATGAATGTACCCTGAGCATGGATGGGCACTCGAAGA
GAAAGCTGCCGACCAACTGATGCAAACGTCCCAACAAAAGTGCCAGAAAT
CGACTGATTCGCCGGCTACATATGTATGTACCCTGAGCATGGATGGGCAC
TCCTGGACTCCGCACGCACACCTCGACCCCAAGCCATCTGTGAACAAAAT
TCCCGCTGAGCAACAAAAATATCCGCAGGCGCCAAATGAACAAGAAAAAA
CTCCGGAGAGAACAACTGGCACGCGGCATATTTATTATTTATGGTGGTAT
CTGCTGCTAAGCCAGCGTAAATCACGCGATTTTTCGTCGACGTTGAGAGC
ACTTTGGTGCTTGGAAATTCGGAAAGTACAGAGAAGGCACCCGCCACCGC
GAGAACCCAACCCACACGCCAAGCCTCCCATCTCGTTGGAATGCATCGGT
CCCGCTACCCCCCGCCCCCCACAACACCTCGAATGA
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