mRNA_L-elsbetiae_contig18330.5313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18330.5313.1
Unique NamemRNA_L-elsbetiae_contig18330.5313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18330.5313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18330contigL-elsbetiae_contig18330:2317..2932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.3172905-CDS-L-elsbetiae_contig18330:2316..24451622815764.3172905-CDS-L-elsbetiae_contig18330:2316..2445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18330 2317..2445 +
1691683087.2682464-CDS-L-elsbetiae_contig18330:2316..24451691683087.2682464-CDS-L-elsbetiae_contig18330:2316..2445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18330 2317..2445 +
1622815764.331299-CDS-L-elsbetiae_contig18330:2774..29301622815764.331299-CDS-L-elsbetiae_contig18330:2774..2930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18330 2775..2930 +
1691683087.2778172-CDS-L-elsbetiae_contig18330:2774..29301691683087.2778172-CDS-L-elsbetiae_contig18330:2774..2930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18330 2775..2930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18330.5313.1prot_L-elsbetiae_contig18330.5313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18330 2317..2930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18330.5313.1

>prot_L-elsbetiae_contig18330.5313.1 ID=prot_L-elsbetiae_contig18330.5313.1|Name=mRNA_L-elsbetiae_contig18330.5313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
RPSSPLPLSFSDNADEADHRATSTKGHSGDAGGAAGTSRSPIEGVAGEAQ
GVPDSAPTGSHAAAAAAATPATPPHKSCDSATVARRSAERSTARE
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mRNA from alignment at L-elsbetiae_contig18330:2317..2932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18330.5313.1 ID=mRNA_L-elsbetiae_contig18330.5313.1|Name=mRNA_L-elsbetiae_contig18330.5313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=616bp|location=Sequence derived from alignment at L-elsbetiae_contig18330:2317..2932+ (Laminarionema elsbetiae ELsaHSoW15)
AGACCGTCGTCCCCGTTGCCGCTGTCTTTCTCCGACAACGCGGACGAGGC
CGACCACCGGGCGACCAGCACCAAGGGGCATTCGGGCGATGCTGGAGGTG
CAGCAGGCACATCGCGCTCGCCCATTGAGGTGGGATGGGATGAGAGGGGA
GCGCTGGGTATGATGGTTGACCCACAGCGGTGTAGTTTATCTCCTGCCGA
GAGACGTATTGACTATATGTGGCATCCATACATGCGTACAGTATTTCGCT
GATAAGGGGCGAGCGAGGAGGAAAATAAACGTATTTTTATTTCAGATCTA
AAGACGTACTAAACGAAGTTGGCTCTACTTTGGTCGTCCATCCCTCGACA
CGGTGGTGGTAGTAGTGCGTATCGTATTGATCGGTCGTGGAGTTTCGCCC
TCTCTCTCTCTTGATTTGTGTTTGCGTTTGCGTGGTTGCTCTTCTTTTAT
CTACGCAGGGCGTTGCGGGCGAGGCACAAGGTGTGCCGGATTCTGCACCA
ACGGGGAGCCACGCAGCAGCAGCGGCGGCGGCAACACCCGCAACTCCTCC
CCACAAAAGTTGTGACAGCGCAACGGTTGCCAGAAGAAGCGCGGAGCGGT
CGACAGCACGCGAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18330:2317..2932+

>mRNA_L-elsbetiae_contig18330.5313.1 ID=mRNA_L-elsbetiae_contig18330.5313.1|Name=mRNA_L-elsbetiae_contig18330.5313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig18330:2317..2932+ (Laminarionema elsbetiae ELsaHSoW15)
AGACCGTCGTCCCCGTTGCCGCTGTCTTTCTCCGACAACGCGGACGAGGC
CGACCACCGGGCGACCAGCACCAAGGGGCATTCGGGCGATGCTGGAGGTG
CAGCAGGCACATCGCGCTCGCCCATTGAGAGACCGTCGTCCCCGTTGCCG
CTGTCTTTCTCCGACAACGCGGACGAGGCCGACCACCGGGCGACCAGCAC
CAAGGGGCATTCGGGCGATGCTGGAGGTGCAGCAGGCACATCGCGCTCGC
CCATTGAGGGCGTTGCGGGCGAGGCACAAGGTGTGCCGGATTCTGCACCA
ACGGGGAGCCACGCAGCAGCAGCGGCGGCGGCAACACCCGCAACTCCTCC
CCACAAAAGTTGTGACAGCGCAACGGTTGCCAGAAGAAGCGCGGAGCGGT
CGACAGCACGCGAGGGCGTTGCGGGCGAGGCACAAGGTGTGCCGGATTCT
GCACCAACGGGGAGCCACGCAGCAGCAGCGGCGGCGGCAACACCCGCAAC
TCCTCCCCACAAAAGTTGTGACAGCGCAACGGTTGCCAGAAGAAGCGCGG
AGCGGTCGACAGCACGCGAG
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