mRNA_L-elsbetiae_contig18319.5307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18319.5307.1
Unique NamemRNA_L-elsbetiae_contig18319.5307.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 252 bits (643), Expect = 1.190e-83
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1 
Query:  109 QYLSSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            + ++ TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 RIITETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 250 bits (638), Expect = 5.610e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:  127 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: F7BPK5_MONDO (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7BPK5_MONDO)

HSP 1 Score: 249 bits (635), Expect = 1.780e-82
Identity = 133/139 (95.68%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:  118 SSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            SSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 SSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLVRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
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BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS)

HSP 1 Score: 249 bits (636), Expect = 2.070e-82
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1 
Query:  112 YLSSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            +L+ TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   14 HLTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
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BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (634), Expect = 2.280e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:  127 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 249 bits (635), Expect = 2.570e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:  127 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (640), Expect = 3.240e-82
Identity = 137/146 (93.84%), Postives = 139/146 (95.21%), Query Frame = 1 
Query:   97 PQADQYLSSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            P   Q  +  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   64 PTFHQQQTVKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: UPI0018D06E24 (uncharacterized protein LOC119694547 n=2 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D06E24)

HSP 1 Score: 254 bits (648), Expect = 3.710e-82
Identity = 137/156 (87.82%), Postives = 144/156 (92.31%), Query Frame = 1 
Query:   67 LFIPIANRSPPQADQYLSSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            LF+P  +   P A     +TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:  144 LFVPFCSSRAPVATLRYDTTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 299
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: A0A1I7S5W3_BURXY (Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S5W3_BURXY)

HSP 1 Score: 249 bits (635), Expect = 4.880e-82
Identity = 134/139 (96.40%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:  118 SSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            S+TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   31 SATMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 169
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Match: A0A6A5GAP2_CAERE (Histone domain-containing protein n=7 Tax=Ecdysozoa TaxID=1206794 RepID=A0A6A5GAP2_CAERE)

HSP 1 Score: 249 bits (635), Expect = 9.890e-82
Identity = 139/166 (83.73%), Postives = 146/166 (87.95%), Query Frame = 1 
Query:   40 HLCLPPSALLF-IPIANRSPPQADQYLSSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 534
            H+CL    + F +PI          + S  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   34 HICLSDCIVFFTVPIG---------FSSFDMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18319.5307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK1.190e-8395.07Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA5.610e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
F7BPK5_MONDO1.780e-8295.68Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7B... [more]
A0A164UB18_9CRUS2.070e-8294.33Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]
A0A1Z5K8H0_FISSO2.280e-8298.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA2.570e-8298.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC3.240e-8293.84Histone domain-containing protein n=8 Tax=Bacillar... [more]
UPI0018D06E243.710e-8287.82uncharacterized protein LOC119694547 n=2 Tax=Plute... [more]
A0A1I7S5W3_BURXY4.880e-8296.40Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxI... [more]
A0A6A5GAP2_CAERE9.890e-8283.73Histone domain-containing protein n=7 Tax=Ecdysozo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18319contigL-elsbetiae_contig18319:1235..1771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue1.2e-65
Seed eggNOG ortholog159749.K0S7I6
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone H3
EggNOG OGs2XDZK@2836,COG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size537
Cds size537
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.9102154-CDS-L-elsbetiae_contig18319:1234..17711622815763.9102154-CDS-L-elsbetiae_contig18319:1234..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 1235..1771 -
1691683087.0388565-CDS-L-elsbetiae_contig18319:1234..17711691683087.0388565-CDS-L-elsbetiae_contig18319:1234..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 1235..1771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18319.5307.1prot_L-elsbetiae_contig18319.5307.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18319 1235..1771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18319.5307.1

>prot_L-elsbetiae_contig18319.5307.1 ID=prot_L-elsbetiae_contig18319.5307.1|Name=mRNA_L-elsbetiae_contig18319.5307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MSPRFLKIGDLTFHLCLPPSALLFIPIANRSPPQADQYLSSTMARTKQTA
RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
TELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDT
NLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at L-elsbetiae_contig18319:1235..1771-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18319.5307.1 ID=mRNA_L-elsbetiae_contig18319.5307.1|Name=mRNA_L-elsbetiae_contig18319.5307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=537bp|location=Sequence derived from alignment at L-elsbetiae_contig18319:1235..1771- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCGCGTTTTTTGAAAATCGGCGATCTCACCTTCCACCTTTGCCT
TCCGCCTTCCGCCCTCTTGTTCATTCCAATCGCCAATCGCTCTCCCCCTC
AAGCCGACCAATACCTCTCAAGCACCATGGCTCGTACGAAGCAGACCGCC
CGTAAGTCCACCGGAGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGC
GGCACGCAAGTCCGCGCCCGCCACCGGCGGAGTGAAGAAGCCCCACCGCT
ACAGGCCTGGCACCGTTGCCCTCCGCGAGATCCGTCGCTACCAGAAGTCG
ACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGTGAGAT
CGCCCAGGACTTCAAGAGCGACCTCCGCTTCCAGGGTTCCGCCGTGCTCG
CCCTTCAGGAGGCCGCCGAGGCCTACCTTGTGGGCCTGTTCGAGGACACC
AACCTGTGCGCCATCCACGCCAAGCGCGTGACCATCATGCCCAAGGACAT
CCAGCTGGCCCGCCGCATCCGCGGCGAGCGCTCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18319:1235..1771-

>mRNA_L-elsbetiae_contig18319.5307.1 ID=mRNA_L-elsbetiae_contig18319.5307.1|Name=mRNA_L-elsbetiae_contig18319.5307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig18319:1235..1771- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCGCGTTTTTTGAAAATCGGCGATCTCACCTTCCACCTTTGCCT
TCCGCCTTCCGCCCTCTTGTTCATTCCAATCGCCAATCGCTCTCCCCCTC
AAGCCGACCAATACCTCTCAAGCACCATGGCTCGTACGAAGCAGACCGCC
CGTAAGTCCACCGGAGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGC
GGCACGCAAGTCCGCGCCCGCCACCGGCGGAGTGAAGAAGCCCCACCGCT
ACAGGCCTGGCACCGTTGCCCTCCGCGAGATCCGTCGCTACCAGAAGTCG
ACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGTGAGAT
CGCCCAGGACTTCAAGAGCGACCTCCGCTTCCAGGGTTCCGCCGTGCTCG
CCCTTCAGGAGGCCGCCGAGGCCTACCTTGTGGGCCTGTTCGAGGACACC
AACCTGTGCGCCATCCACGCCAAGCGCGTGACCATCATGCCCAAGGACAT
CCAGCTGGCCCGCCGCATCCGCGGCGAGCGCTCTTAAATGTCGCCGCGTT
TTTTGAAAATCGGCGATCTCACCTTCCACCTTTGCCTTCCGCCTTCCGCC
CTCTTGTTCATTCCAATCGCCAATCGCTCTCCCCCTCAAGCCGACCAATA
CCTCTCAAGCACCATGGCTCGTACGAAGCAGACCGCCCGTAAGTCCACCG
GAGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCGGCACGCAAGTCC
GCGCCCGCCACCGGCGGAGTGAAGAAGCCCCACCGCTACAGGCCTGGCAC
CGTTGCCCTCCGCGAGATCCGTCGCTACCAGAAGTCGACCGAGCTGCTGA
TCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGTGAGATCGCCCAGGACTTC
AAGAGCGACCTCCGCTTCCAGGGTTCCGCCGTGCTCGCCCTTCAGGAGGC
CGCCGAGGCCTACCTTGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCA
TCCACGCCAAGCGCGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGC
CGCATCCGCGGCGAGCGCTCTTAA
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