mRNA_L-elsbetiae_contig1830.5305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1830.5305.1
Unique NamemRNA_L-elsbetiae_contig1830.5305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1830.5305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1830contigL-elsbetiae_contig1830:13344..13922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1830.5305.1prot_L-elsbetiae_contig1830.5305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1830 13433..13786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.7119596-UTR-L-elsbetiae_contig1830:13343..134321622815763.7119596-UTR-L-elsbetiae_contig1830:13343..13432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 13344..13432 +
1691683086.9108565-UTR-L-elsbetiae_contig1830:13343..134321691683086.9108565-UTR-L-elsbetiae_contig1830:13343..13432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 13344..13432 +
1622815763.7320964-UTR-L-elsbetiae_contig1830:13786..139221622815763.7320964-UTR-L-elsbetiae_contig1830:13786..13922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 13787..13922 +
1691683086.932406-UTR-L-elsbetiae_contig1830:13786..139221691683086.932406-UTR-L-elsbetiae_contig1830:13786..13922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 13787..13922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.7222419-CDS-L-elsbetiae_contig1830:13432..137861622815763.7222419-CDS-L-elsbetiae_contig1830:13432..13786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 13433..13786 +
1691683086.9236615-CDS-L-elsbetiae_contig1830:13432..137861691683086.9236615-CDS-L-elsbetiae_contig1830:13432..13786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 13433..13786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1830.5305.1

>prot_L-elsbetiae_contig1830.5305.1 ID=prot_L-elsbetiae_contig1830.5305.1|Name=mRNA_L-elsbetiae_contig1830.5305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MISLSAPLSSYARHVTPVKGSSFVCIWMLELERIAQCKTKLRESQVEHEA
HNEKYRSPTIQHVDPQTCSACINSVCTPCVGQSSSIFGASLFMHHFLNMF
TNGDGMRKEGALQPKHG*
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mRNA from alignment at L-elsbetiae_contig1830:13344..13922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1830.5305.1 ID=mRNA_L-elsbetiae_contig1830.5305.1|Name=mRNA_L-elsbetiae_contig1830.5305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=579bp|location=Sequence derived from alignment at L-elsbetiae_contig1830:13344..13922+ (Laminarionema elsbetiae ELsaHSoW15)
CACCAGTCAGAGTCCTTGGAATACACGTAATGCCGCAATTTGATCGTGGG
AGCATCGGTTAGAACCAGTTTTTGCGCTGGCTACTTTCAATGATATCGCT
CTCTGCACCCCTCTCTTCGTACGCACGGCACGTGACGCCAGTTAAAGGTT
CTTCGTTTGTGTGTATCTGGATGCTTGAGCTAGAAAGAATTGCGCAATGC
AAAACAAAACTACGAGAGTCGCAGGTAGAGCACGAGGCACACAACGAAAA
GTACAGAAGCCCGACAATCCAACATGTCGACCCTCAAACATGCAGTGCTT
GTATAAATAGTGTGTGTACGCCGTGCGTGGGCCAATCAAGCTCTATATTT
GGTGCAAGTTTGTTCATGCACCATTTCTTGAATATGTTCACGAATGGAGA
CGGGATGCGGAAAGAAGGAGCCCTTCAACCAAAGCACGGCTGAGTTTTGC
CATAAATACTAGAAGTTCAGTTACTACGTACACTTCGAAAACCAAAGCGT
GATAATTGAAAGAAGAGACAGGAGGAGATGCGCGAAGGAAGACATCGAGC
AGCTAAAAAGGCGGTTGTGTGGAGCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1830:13344..13922+

>mRNA_L-elsbetiae_contig1830.5305.1 ID=mRNA_L-elsbetiae_contig1830.5305.1|Name=mRNA_L-elsbetiae_contig1830.5305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1830:13344..13922+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCGCTCTCTGCACCCCTCTCTTCGTACGCACGGCACGTGACGCC
AGTTAAAGGTTCTTCGTTTGTGTGTATCTGGATGCTTGAGCTAGAAAGAA
TTGCGCAATGCAAAACAAAACTACGAGAGTCGCAGGTAGAGCACGAGGCA
CACAACGAAAAGTACAGAAGCCCGACAATCCAACATGTCGACCCTCAAAC
ATGCAGTGCTTGTATAAATAGTGTGTGTACGCCGTGCGTGGGCCAATCAA
GCTCTATATTTGGTGCAAGTTTGTTCATGCACCATTTCTTGAATATGTTC
ACGAATGGAGACGGGATGCGGAAAGAAGGAGCCCTTCAACCAAAGCACGG
CTGAATGATATCGCTCTCTGCACCCCTCTCTTCGTACGCACGGCACGTGA
CGCCAGTTAAAGGTTCTTCGTTTGTGTGTATCTGGATGCTTGAGCTAGAA
AGAATTGCGCAATGCAAAACAAAACTACGAGAGTCGCAGGTAGAGCACGA
GGCACACAACGAAAAGTACAGAAGCCCGACAATCCAACATGTCGACCCTC
AAACATGCAGTGCTTGTATAAATAGTGTGTGTACGCCGTGCGTGGGCCAA
TCAAGCTCTATATTTGGTGCAAGTTTGTTCATGCACCATTTCTTGAATAT
GTTCACGAATGGAGACGGGATGCGGAAAGAAGGAGCCCTTCAACCAAAGC
ACGGCTGA
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