Homology
BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match:
D7G292_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G292_ECTSI)
HSP 1 Score: 66.2 bits (160), Expect = 3.320e-8
Identity = 54/164 (32.93%), Postives = 68/164 (41.46%), Query Frame = -2
Query: 528 FRWDADETVVNNDGTXXXXXXXXXXXEASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMCRPPRTGCGLYSGYPGLHGHVPPT*TGLRLV*GISLTTQMGLSGSSRSSVPTTVLGATR*KLGCHWVVHMEGVCGQQQLVYKEEAWMPMVSAA---GSMVWWPG 1010
RW ADET VN +G EA E P LER++KLLA APQDRAW RRGF+ +CR R +RL I + G + P R + G W+ HME V Q ++ + + A GSMV PG
Sbjct: 297 LRWGADETAVNLEGETVVSMVIRRIAEALETRCPPLERVSKLLARAPQDRAWRRRGFLVLCRAHRDR--------------------VRLAVEIPVAAAEATEGPQQR--PRCCARTGRWRSGWRWMGHMEAVVEQARVGVAYAPGLELCGKAPSVGSMVCRPG 438
BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match:
D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)
HSP 1 Score: 60.5 bits (145), Expect = 2.330e-6
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = -2
Query: 825 DETVVNNDGTXXXXXXXXXXXEASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMCR 995
DET+V+N G E+ RP +ERL+K+LA APQDRAWCRRGF+ MCR
Sbjct: 314 DETIVDNRGRTAYQRLPAID-NVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCR 369
BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match:
A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)
HSP 1 Score: 59.7 bits (143), Expect = 3.080e-6
Identity = 32/79 (40.51%), Postives = 40/79 (50.63%), Query Frame = -2
Query: 828 APPCMRCGAERPTPRACCFRWDADETVVNNDGTXXXXXXXXXXXEASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMC 1064
+P C C RW ADET V++D A+ R RLER+++LLA APQDRAW RRGF+ C
Sbjct: 161 SPLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPC 239
BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Match:
A0A6H5KB54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB54_9PHAE)
HSP 1 Score: 56.2 bits (134), Expect = 5.730e-5
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = -2
Query: 825 EASEQDRPRLERLTKLLAHAPQDRAWCRRGFMAMCR 932
EA+++D RLERL+KLL APQDRAW RRGF+A+CR
Sbjct: 325 EAADEDHRRLERLSKLLTRAPQDRAWRRRGFLALCR 360
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig183.5298.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 3.32e-8 / Id = 32.93 Expect = 2.33e-6 / Id = 52.63 Expect = 3.08e-6 / Id = 40.51 Expect = 5.73e-5 / Id = 69.44 Sequence D7G292_ECTSI D7FPN3_ECTSI A0A6H5KFY7_9PHAE A0A6H5KB54_9PHAE
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 1185
Cds size 759
Stop 1
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815762.8628626-CDS-L-elsbetiae_contig183:13383..14142 1622815762.8628626-CDS-L-elsbetiae_contig183:13383..14142 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig183 13384..14142 +
1691683086.3355017-CDS-L-elsbetiae_contig183:13383..14142 1691683086.3355017-CDS-L-elsbetiae_contig183:13383..14142 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig183 13384..14142 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815762.8766193-UTR-L-elsbetiae_contig183:14142..14568 1622815762.8766193-UTR-L-elsbetiae_contig183:14142..14568 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig183 14143..14568 +
1691683086.3463783-UTR-L-elsbetiae_contig183:14142..14568 1691683086.3463783-UTR-L-elsbetiae_contig183:14142..14568 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig183 14143..14568 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig183.5298.1
>prot_L-elsbetiae_contig183.5298.1 ID=prot_L-elsbetiae_contig183.5298.1|Name=mRNA_L-elsbetiae_contig183.5298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp
PSYISGGAILGKIPPVTFPSIFVTQRLYIYQHQRQNVLPPSLAALRLVCR LGRTFFSPSPTERQGNTGVCCTIPSTGSIQYNHATVEKHRSHPSNANSSL NIHVQKKTAAQQSSQTRRQNGKKLESTLWRNVAACATRPNTNEQKTSKTG RHSVLYRNPQDVAMWRNISSSAPHLEPGHHTIEPAADTMGIQASSLYTSC CCPHTPSMCTTQWHPNFYLVAPSTVVGTLLRLLPDSPICVVRDIPYTRRN PV* back to top mRNA from alignment at L-elsbetiae_contig183:13384..14568+
Legend: CDS polypeptide UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig183.5298.1 ID=mRNA_L-elsbetiae_contig183.5298.1|Name=mRNA_L-elsbetiae_contig183.5298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1185bp|location=Sequence derived from alignment at L-elsbetiae_contig183:13384..14568+ (Laminarionema elsbetiae ELsaHSoW15)CCCTCGTATATCTCCGGTGGTGCGATCTTAGGTAAGATACCGCCAGTAAC
CTTCCCGTCGATTTTTGTTACGCAACGTCTGTACATCTATCAACACCAAA
GGCAGAACGTCCTCCCTCCCTCGTTGGCCGCTCTGCGGCTGGTCTGTCGC
CTCGGCCGCACTTTTTTCTCTCCATCCCCTACCGAGAGACAAGGGAACAC
AGGCGTGTGCTGTACGATACCATCCACAGGCAGCATACAATATAACCATG
CCACCGTGGAAAAACACCGAAGCCACCCATCCAACGCGAACAGCAGCCTA
AATATACACGTACAAAAGAAAACAGCGGCACAACAAAGTTCGCAGACACG
GCGGCAAAATGGAAAAAAACTCGAAAGTACGTTGTGGCGCAATGTGGCGG
CATGTGCCACACGTCCGAACACGAACGAACAAAAAACCAGCAAGACTGGC
CGGCATTCGGTGCTCTACAGGAACCCCCAAGATGTGGCGATGTGGCGGAA
TATATCCTCATCGGCCCCCCACCTTGAGCCAGGCCACCATACCATCGAAC
CCGCCGCCGATACCATGGGCATCCAGGCCTCCTCCTTGTACACGAGCTGC
TGCTGCCCGCATACCCCCTCCATGTGCACCACCCAGTGGCACCCCAACTT
TTACCTGGTCGCTCCTAGCACGGTGGTTGGGACGCTGCTGCGGCTGCTGC
CCGATAGCCCCATCTGCGTTGTCAGGGATATCCCCTATACAAGGCGCAAC
CCTGTCTAG GTGGGCGGCACATGGCCATGAAGCCCCGGATATCCACTATA
CAAGCCGCAACCTGTCCTGGGTGGGCGGCACATGGCCATGAAGCCCCGGC
GACACCATGCCCTGTCTTGCGGGGCGTGCGCCAGCAGCTTGGTCAGGCGT
TCGAGTCTCGGGCGGTCCTGCTCGGAAGCTTCCTCGTCGTCTGAAATCCA
CCATTGGCTGGAGGTCGTGCCGTCGTTGTTGACAACGGTCTCATCAGCGT
CCCACCTAAAGCAGCACGCCCGCGGCGTCGGCCTCTCCGCGCCACACCTC
ATGCAAGGGGGGGCCTCAGCGGGCTGACAAAAGTAGAGCGTTTTTTTTTT
CCCACATCACGGCCTCTGGCTTCGATGGTGCCTGGGATGGAGGCTGCTTT
GATGTCCTCTGCGGCGTCGTGCAGGGCCGTCTGGT back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig183:13384..14568+
>mRNA_L-elsbetiae_contig183.5298.1 ID=mRNA_L-elsbetiae_contig183.5298.1|Name=mRNA_L-elsbetiae_contig183.5298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1518bp|location=Sequence derived from alignment at L-elsbetiae_contig183:13384..14568+ (Laminarionema elsbetiae ELsaHSoW15) CCCTCGTATATCTCCGGTGGTGCGATCTTAGGTAAGATACCGCCAGTAAC CTTCCCGTCGATTTTTGTTACGCAACGTCTGTACATCTATCAACACCAAA GGCAGAACGTCCTCCCTCCCTCGTTGGCCGCTCTGCGGCTGGTCTGTCGC CTCGGCCGCACTTTTTTCTCTCCATCCCCTACCGAGAGACAAGGGAACAC AGGCGTGTGCTGTACGATACCATCCACAGGCAGCATACAATATAACCATG CCACCGTGGAAAAACACCGAAGCCACCCATCCAACGCGAACAGCAGCCTA AATATACACGTACAAAAGAAAACAGCGGCACAACAAAGTTCGCAGACACG GCGGCAAAATGGAAAAAAACTCGAAAGTACGTTGTGGCGCAATGTGGCGG CATGTGCCACACGTCCGAACACGAACGAACAAAAAACCAGCAAGACTGGC CGGCATTCGGTGCTCTACAGGAACCCCCAAGATGTGGCGATGTGGCGGAA TATATCCTCATCGGCCCCCCACCTTGAGCCAGGCCACCATACCATCGAAC CCGCCGCCGATACCATGGGCATCCAGGCCTCCTCCTTGTACACGAGCTGC TGCTGCCCGCATACCCCCTCCATGTGCACCACCCAGTGGCACCCCAACTT TTACCTGGTCGCTCCTAGCACGGTGGTTGGGACGCTGCTGCGGCTGCTGC CCGATAGCCCCATCTGCGTTGTCAGGGATATCCCCTATACAAGGCGCAAC CCTGTCTAGCCCTCGTATATCTCCGGTGGTGCGATCTTAGGTAAGATACC GCCAGTAACCTTCCCGTCGATTTTTGTTACGCAACGTCTGTACATCTATC AACACCAAAGGCAGAACGTCCTCCCTCCCTCGTTGGCCGCTCTGCGGCTG GTCTGTCGCCTCGGCCGCACTTTTTTCTCTCCATCCCCTACCGAGAGACA AGGGAACACAGGCGTGTGCTGTACGATACCATCCACAGGCAGCATACAAT ATAACCATGCCACCGTGGAAAAACACCGAAGCCACCCATCCAACGCGAAC AGCAGCCTAAATATACACGTACAAAAGAAAACAGCGGCACAACAAAGTTC GCAGACACGGCGGCAAAATGGAAAAAAACTCGAAAGTACGTTGTGGCGCA ATGTGGCGGCATGTGCCACACGTCCGAACACGAACGAACAAAAAACCAGC AAGACTGGCCGGCATTCGGTGCTCTACAGGAACCCCCAAGATGTGGCGAT GTGGCGGAATATATCCTCATCGGCCCCCCACCTTGAGCCAGGCCACCATA CCATCGAACCCGCCGCCGATACCATGGGCATCCAGGCCTCCTCCTTGTAC ACGAGCTGCTGCTGCCCGCATACCCCCTCCATGTGCACCACCCAGTGGCA CCCCAACTTTTACCTGGTCGCTCCTAGCACGGTGGTTGGGACGCTGCTGC GGCTGCTGCCCGATAGCCCCATCTGCGTTGTCAGGGATATCCCCTATACA AGGCGCAACCCTGTCTAG back to top