mRNA_L-elsbetiae_contig18279.5289.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18279.5289.1
Unique NamemRNA_L-elsbetiae_contig18279.5289.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: A0A6H5KVJ9_9PHAE (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVJ9_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.600e-43
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:  163 KKTPFYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFRSELQ 411
            +K P+YVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKA KSPQQFCDEVSQEFR  L+
Sbjct:   67 EKPPYYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKADKSPQQFCDEVSQEFRDLLK 149
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BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: W7TRH3_9STRA (Methionine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRH3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.340e-39
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:  163 KKTPFYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFRS 402
            KKT +YVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGR+V FLTGTDEHGQKVE SA KAGKSPQ F DEVSQ FRS
Sbjct:   89 KKTGYYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGRDVFFLTGTDEHGQKVEQSAAKAGKSPQTFVDEVSQNFRS 168
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BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: A0A836CKB9_9STRA (Methionine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.960e-39
Identity = 67/76 (88.16%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:  172 PFYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFR 399
            P+Y+TTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGR+VMFLTGTDEHGQKV+ SA K GKSPQ+FCDEVSQ FR
Sbjct:   70 PYYITTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGRDVMFLTGTDEHGQKVQESAAKQGKSPQEFCDEVSQSFR 145
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BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: UPI001106F896 (methionine--tRNA ligase n=1 Tax=Luteithermobacter gelatinilyticus TaxID=2582913 RepID=UPI001106F896)

HSP 1 Score: 139 bits (351), Expect = 2.950e-36
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:  175 FYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFR 399
            FY+TTPIYYVNDKPHIGHAYTTLACDV+ARF RLDG EVMFLTGTDEHGQKVE SA  AGK+PQ+FCD+VSQ FR
Sbjct:    5 FYITTPIYYVNDKPHIGHAYTTLACDVLARFKRLDGYEVMFLTGTDEHGQKVEKSARAAGKTPQEFCDDVSQGFR 79
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BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: A0A2E7HDI6_9PROT (Methionine--tRNA ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7HDI6_9PROT)

HSP 1 Score: 139 bits (350), Expect = 4.190e-36
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:  166 KTPFYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFR 399
            K PFY+TTPIYYVND PHIGHAYTTLACDV+ARFMRLDG EVMFLTGTDEHGQKVE +A +AG  PQ FCD+VS+ FR
Sbjct:    4 KPPFYITTPIYYVNDNPHIGHAYTTLACDVLARFMRLDGHEVMFLTGTDEHGQKVEKAAEEAGIDPQSFCDKVSENFR 81
[Close]
BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: A0A3M1K284_9PROT (Methionine--tRNA ligase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1K284_9PROT)

HSP 1 Score: 129 bits (324), Expect = 7.770e-36
Identity = 61/83 (73.49%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:  166 KTP-FYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFRSELQ 411
            +TP +YVTTPIYYVND PHIGHAYTTLACDV+ARF RLDG  V+FLTGTDEHGQKV+ SA  AG +PQ+FCD VS+ FR+ L+
Sbjct:    4 ETPRYYVTTPIYYVNDVPHIGHAYTTLACDVLARFKRLDGYRVLFLTGTDEHGQKVQKSAEAAGIAPQEFCDRVSKRFRALLE 86
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BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: A0A3B0SYP8_9ZZZZ (Methionine--tRNA ligase n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0SYP8_9ZZZZ)

HSP 1 Score: 138 bits (347), Expect = 1.140e-35
Identity = 64/84 (76.19%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:  163 KKTPFYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFRSELQY 414
            ++  FY+TTPIYYVND PHIGHAYTTLACDVIARF RLDG EVMFLTGTDEHGQKVE SA   GK PQ+FCDEVSQ FR   ++
Sbjct:    3 ERPAFYITTPIYYVNDIPHIGHAYTTLACDVIARFKRLDGFEVMFLTGTDEHGQKVEKSAAAKGKDPQEFCDEVSQRFRELAEF 86
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BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: A0A501PSU6_9PROT (Methionine--tRNA ligase n=1 Tax=Emcibacter nanhaiensis TaxID=1505037 RepID=A0A501PSU6_9PROT)

HSP 1 Score: 137 bits (346), Expect = 1.530e-35
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  175 FYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFR 399
            FY+TTPIYYVNDKPHIGHAYTTLACD +ARF RLDG +VMFLTGTDEHGQKVE SAL AGK+P +FCDEVSQ FR
Sbjct:    5 FYITTPIYYVNDKPHIGHAYTTLACDFLARFKRLDGYDVMFLTGTDEHGQKVEKSALAAGKTPIEFCDEVSQRFR 79
[Close]
BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: UPI0011DD0A1C (class I tRNA ligase family protein n=1 Tax=Azospirillum sp. B506 TaxID=137721 RepID=UPI0011DD0A1C)

HSP 1 Score: 130 bits (326), Expect = 1.680e-35
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:  175 FYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFR 399
            FY+TTPIYYVND PHIGHAYTTLACDV+ARFMRLDG +V FLTGTDEHGQKVE SA KAG +PQ+F D VSQ FR
Sbjct:    7 FYLTTPIYYVNDVPHIGHAYTTLACDVLARFMRLDGYDVKFLTGTDEHGQKVEKSAEKAGIAPQEFTDRVSQNFR 81
[Close]
BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Match: A0A2E6ST17_9PROT (Methionine--tRNA ligase (Fragment) n=1 Tax=SAR116 cluster bacterium TaxID=2024888 RepID=A0A2E6ST17_9PROT)

HSP 1 Score: 135 bits (341), Expect = 1.810e-35
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:  169 TPFYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFLTGTDEHGQKVEASALKAGKSPQQFCDEVSQEFRSEL 408
            TP+Y+TTPIYYVNDKPHIGHAYTTLACDV+ARF RLDG +V FLTGTDEHGQKV+A+A KAG SPQQF D VSQ FR  L
Sbjct:    2 TPYYLTTPIYYVNDKPHIGHAYTTLACDVLARFKRLDGFDVKFLTGTDEHGQKVQAAAEKAGISPQQFTDTVSQNFRDLL 81
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18279.5289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVJ9_9PHAE1.600e-4391.57Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
W7TRH3_9STRA3.340e-3988.75Methionine--tRNA ligase n=2 Tax=Monodopsidaceae Ta... [more]
A0A836CKB9_9STRA4.960e-3988.16Methionine--tRNA ligase n=1 Tax=Tribonema minus Ta... [more]
UPI001106F8962.950e-3685.33methionine--tRNA ligase n=1 Tax=Luteithermobacter ... [more]
A0A2E7HDI6_9PROT4.190e-3680.77Methionine--tRNA ligase n=1 Tax=Rhodospirillaceae ... [more]
A0A3M1K284_9PROT7.770e-3673.49Methionine--tRNA ligase (Fragment) n=1 Tax=Alphapr... [more]
A0A3B0SYP8_9ZZZZ1.140e-3576.19Methionine--tRNA ligase n=1 Tax=hydrothermal vent ... [more]
A0A501PSU6_9PROT1.530e-3584.00Methionine--tRNA ligase n=1 Tax=Emcibacter nanhaie... [more]
UPI0011DD0A1C1.680e-3581.33class I tRNA ligase family protein n=1 Tax=Azospir... [more]
A0A2E6ST17_9PROT1.810e-3580.00Methionine--tRNA ligase (Fragment) n=1 Tax=SAR116 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18279contigL-elsbetiae_contig18279:1180..2560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score134.0
Seed ortholog evalue5.5e-29
Seed eggNOG ortholog1089552.KI911559_gene2312
Preferred namemetG
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EggNOG OGs1MUBY@1224,2JPGA@204441,2TQKA@28211,COG0143@1,COG0143@2
EC6.1.1.10
COG Functional cat.J
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons2
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.0692177-CDS-L-elsbetiae_contig18279:1179..14671622815762.0692177-CDS-L-elsbetiae_contig18279:1179..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18279 1180..1467 +
1691683085.8719988-CDS-L-elsbetiae_contig18279:1179..14671691683085.8719988-CDS-L-elsbetiae_contig18279:1179..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18279 1180..1467 +
1622815762.0837746-CDS-L-elsbetiae_contig18279:2407..25601622815762.0837746-CDS-L-elsbetiae_contig18279:2407..2560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18279 2408..2560 +
1691683085.8894472-CDS-L-elsbetiae_contig18279:2407..25601691683085.8894472-CDS-L-elsbetiae_contig18279:2407..2560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18279 2408..2560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18279.5289.1prot_L-elsbetiae_contig18279.5289.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18279 1180..2560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18279.5289.1

>prot_L-elsbetiae_contig18279.5289.1 ID=prot_L-elsbetiae_contig18279.5289.1|Name=mRNA_L-elsbetiae_contig18279.5289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
AATDARTRRQSSSSSSSTAVAVAAAAATSTTTMRATATSAGGGDGDGQAG
GGGGKKTPFYVTTPIYYVNDKPHIGHAYTTLACDVIARFMRLDGREVMFL
TGTDEHGQKVEASALKAGKSPQQFCDEVSQEFRSELQYGYIRLGRL*
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mRNA from alignment at L-elsbetiae_contig18279:1180..2560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18279.5289.1 ID=mRNA_L-elsbetiae_contig18279.5289.1|Name=mRNA_L-elsbetiae_contig18279.5289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1381bp|location=Sequence derived from alignment at L-elsbetiae_contig18279:1180..2560+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCCACGGACGCTCGGACGCGAAGGCAATCATCATCATCTTCGTCTTC
GACAGCAGTAGCAGTAGCAGCAGCAGCCGCAACGTCGACCACAACGATGA
GAGCAACAGCAACATCGGCGGGGGGCGGGGACGGTGACGGGCAAGCAGGC
GGCGGCGGTGGCAAGAAGACGCCGTTCTACGTGACGACGCCAATCTACTA
CGTGAACGACAAGCCGCACATCGGGCACGCCTACACTACCCTCGCGTGCG
ACGTGATAGCTCGGTTCATGAGGCTCGACGGCCGGGAGGTGTGTGTGTGC
ACGCGCGCGCGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGGTCCGGG
TTCTTTACTCTTGTAGTATATACCATACTGATAGTCAGGAATGTGGGCGG
GGGGGGGGAGAGGGCAACGGCGCTCAAGATCGACCGCCCGATTCGTGCTT
GATGGCCCTTGTCTGCGTGTTGCTACATACATACGGACCACAAATACATA
GAAGTAGAAGTATTTAATTTATGAACAGAAAACCTTAAGGAGGGGACAAC
AACGATTTCTAGATACTACTCTGCTGGACCGGCCGTTCTAGTGTTACACG
GCCGATCAAGTCTGCGTGGTTCGTGCTCCTGGGTGGGTTCGCCAAACGGT
TTTGTCGCGGTGCCTCACAAGTTCCGGACCCCGACTACCCGGTTATTCAA
AACCGACAAAACAGCCGTTTATTGTCGTCTTATTCCGAGACCGGCTTAGC
ATTTGTCCAGCAGTGTCTTGCCTGTTTGCTTTGCTATGCTTTGCTCTGCG
GTGGTTTGCTTTGCTATGCTTTGCTTTGCGGTGGTTTGCTTTGCTCTGCT
TTGCTTTGCTTTGCTTTCCTCTGCTTTGCTTTGCTACACTGTGCTATGCT
ACGCTTTGCTATGCTATGCTTTGCTTTGCTACGCTTTGCTACGCTTTGCT
ACGCTTTGCTACGCTTTGCTACGCTTTGCTACGCTTTGCTACGCTTTGCT
ACGCTTTGCTACGCTTTGCTACGCTTTGCTACGCTTTGCTACGCTTTGCT
ATGCTGTGCTTTGCTGTGCTTTGCTCTGCTTTGCTACGCTTGTATGCTTT
GCTACGTTTTGCTATGCTTTGCTACGCTTTGCCACGCCTTGCTCTGCTTT
GCATTCACGATGTGCTGTGCTGTGCTGTGTTGAGCTGTGCTGTGCTGTGC
TGTTCTACAATATGTACGCGATCGAAAGGTGATGTTCCTCACCGGGACCG
ACGAGCACGGGCAGAAGGTGGAGGCCTCGGCGCTCAAGGCCGGCAAGTCG
CCGCAACAGTTCTGCGACGAGGTTTCCCAGGAGTTCAGGTCTGAGCTACA
GTACGGGTACATAAGATTGGGTCGTCTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18279:1180..2560+

>mRNA_L-elsbetiae_contig18279.5289.1 ID=mRNA_L-elsbetiae_contig18279.5289.1|Name=mRNA_L-elsbetiae_contig18279.5289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig18279:1180..2560+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCCACGGACGCTCGGACGCGAAGGCAATCATCATCATCTTCGTCTTC
GACAGCAGTAGCAGTAGCAGCAGCAGCCGCAACGTCGACCACAACGATGA
GAGCAACAGCAACATCGGCGGGGGGCGGGGACGGTGACGGGCAAGCAGGC
GGCGGCGGTGGCAAGAAGACGCCGTTCTACGTGACGACGCCAATCTACTA
CGTGAACGACAAGCCGCACATCGGGCACGCCTACACTACCCTCGCGTGCG
ACGTGATAGCTCGGTTCATGAGGCTCGACGGCCGGGAGGCAGCCACGGAC
GCTCGGACGCGAAGGCAATCATCATCATCTTCGTCTTCGACAGCAGTAGC
AGTAGCAGCAGCAGCCGCAACGTCGACCACAACGATGAGAGCAACAGCAA
CATCGGCGGGGGGCGGGGACGGTGACGGGCAAGCAGGCGGCGGCGGTGGC
AAGAAGACGCCGTTCTACGTGACGACGCCAATCTACTACGTGAACGACAA
GCCGCACATCGGGCACGCCTACACTACCCTCGCGTGCGACGTGATAGCTC
GGTTCATGAGGCTCGACGGCCGGGAGGTGATGTTCCTCACCGGGACCGAC
GAGCACGGGCAGAAGGTGGAGGCCTCGGCGCTCAAGGCCGGCAAGTCGCC
GCAACAGTTCTGCGACGAGGTTTCCCAGGAGTTCAGGTCTGAGCTACAGT
ACGGGTACATAAGATTGGGTCGTCTCTAGGTGATGTTCCTCACCGGGACC
GACGAGCACGGGCAGAAGGTGGAGGCCTCGGCGCTCAAGGCCGGCAAGTC
GCCGCAACAGTTCTGCGACGAGGTTTCCCAGGAGTTCAGGTCTGAGCTAC
AGTACGGGTACATAAGATTGGGTCGTCTCTAG
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