mRNA_L-elsbetiae_contig18267.5286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18267.5286.1
Unique NamemRNA_L-elsbetiae_contig18267.5286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18267.5286.1 vs. uniprot
Match: D8LTJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.870e-20
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VAADRNGNIFVGGQTDGNLFAPASAGDGQDIWVAKLDGAGGELLWGYQASA 153
            VA DR+GNIFVGGQTDGNLFAP + GDGQDIWVAKL+G GG LLWGYQ  +
Sbjct:   82 VATDRSGNIFVGGQTDGNLFAPWTEGDGQDIWVAKLEGEGGGLLWGYQVGS 132
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BLAST of mRNA_L-elsbetiae_contig18267.5286.1 vs. uniprot
Match: A0A6H5KWN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.300e-20
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VAADRNGNIFVGGQTDGNLFAPASAGDGQDIWVAKLDGAGGELLWGYQASA 153
            VA DR+GNIFVGGQTDGNLFAP + GDGQDIWVAKL+G GG LLWGYQ  +
Sbjct:   78 VATDRSGNIFVGGQTDGNLFAPWTEGDGQDIWVAKLEGEGGGLLWGYQVGS 128
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BLAST of mRNA_L-elsbetiae_contig18267.5286.1 vs. uniprot
Match: A0A1Y0RJM2_9CYAN (Uncharacterized protein n=1 Tax=Nostocales cyanobacterium HT-58-2 TaxID=1940762 RepID=A0A1Y0RJM2_9CYAN)

HSP 1 Score: 47.8 bits (112), Expect = 7.030e-5
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 VAADRNGNIFVGGQTDGNLFAPASAGDGQDIWVAKLDGAGGELLWGYQ 144
            V  D+ GN ++ G TDGNLF+   + D  ++WVAK D + G+ LWG Q
Sbjct:  283 VVTDKEGNFYLAGATDGNLFSSKQS-DELEVWVAKYD-SNGKQLWGKQ 328
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18267.5286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTJ4_ECTSI2.870e-2078.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWN4_9PHAE8.300e-2078.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y0RJM2_9CYAN7.030e-545.83Uncharacterized protein n=1 Tax=Nostocales cyanoba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18267contigL-elsbetiae_contig18267:2413..2565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionBeta-propeller repeat
Ec32 orthologEc-02_005830.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.9300525-CDS-L-elsbetiae_contig18267:2412..25651622815761.9300525-CDS-L-elsbetiae_contig18267:2412..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18267 2413..2565 -
1691683085.8213286-CDS-L-elsbetiae_contig18267:2412..25651691683085.8213286-CDS-L-elsbetiae_contig18267:2412..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18267 2413..2565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18267.5286.1prot_L-elsbetiae_contig18267.5286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18267 2413..2565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18267.5286.1

>prot_L-elsbetiae_contig18267.5286.1 ID=prot_L-elsbetiae_contig18267.5286.1|Name=mRNA_L-elsbetiae_contig18267.5286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=51bp
VAADRNGNIFVGGQTDGNLFAPASAGDGQDIWVAKLDGAGGELLWGYQAS
A
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mRNA from alignment at L-elsbetiae_contig18267:2413..2565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18267.5286.1 ID=mRNA_L-elsbetiae_contig18267.5286.1|Name=mRNA_L-elsbetiae_contig18267.5286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=153bp|location=Sequence derived from alignment at L-elsbetiae_contig18267:2413..2565- (Laminarionema elsbetiae ELsaHSoW15)
GTGGCGGCGGACCGCAACGGCAACATCTTTGTCGGGGGGCAGACGGACGG
GAACCTTTTCGCGCCCGCGTCGGCCGGGGACGGGCAGGACATCTGGGTGG
CGAAGCTGGATGGGGCGGGAGGGGAGCTGCTGTGGGGGTATCAGGCGAGT
GCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18267:2413..2565-

>mRNA_L-elsbetiae_contig18267.5286.1 ID=mRNA_L-elsbetiae_contig18267.5286.1|Name=mRNA_L-elsbetiae_contig18267.5286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig18267:2413..2565- (Laminarionema elsbetiae ELsaHSoW15)
GTGGCGGCGGACCGCAACGGCAACATCTTTGTCGGGGGGCAGACGGACGG
GAACCTTTTCGCGCCCGCGTCGGCCGGGGACGGGCAGGACATCTGGGTGG
CGAAGCTGGATGGGGCGGGAGGGGAGCTGCTGTGGGGGTATCAGGCGAGT
GCGGTGGCGGCGGACCGCAACGGCAACATCTTTGTCGGGGGGCAGACGGA
CGGGAACCTTTTCGCGCCCGCGTCGGCCGGGGACGGGCAGGACATCTGGG
TGGCGAAGCTGGATGGGGCGGGAGGGGAGCTGCTGTGGGGGTATCAGGCG
AGTGCG
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