mRNA_L-elsbetiae_contig18260.5284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18260.5284.1
Unique NamemRNA_L-elsbetiae_contig18260.5284.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: D8LNX3_ECTSI (Tubulin folding cofactor D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX3_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 9.750e-51
Identity = 81/86 (94.19%), Postives = 86/86 (100.00%), Query Frame = 2
Query:    2 GRPGEAFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            GRPGEAFPFQVFICPQLH++FCVIYQLCRVRGAKAVVRLMPHEA++LEPV+HALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID
Sbjct:   74 GRPGEAFPFQVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 159          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: A0A6H5KH41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH41_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 7.910e-35
Identity = 60/67 (89.55%), Postives = 66/67 (98.51%), Query Frame = 2
Query:   59 VFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            +FC+IYQLCR+RGAKAV RLMPHEA++LEPV+HALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID
Sbjct:    1 MFCMIYQLCRLRGAKAVARLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 67          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: A0A7S2WVP9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVP9_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.140e-30
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   11 GEAFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDI 256
            GEAFPFQ    PQLH +F ++YQLCR RG K V +   HE S+LEP L  LQ+QD  D+ +WETRYGLLLWLSML +VPFDI
Sbjct:  115 GEAFPFQCAREPQLHCIFQIVYQLCRCRGQKCVAKFFSHEVSDLEPTLFMLQSQDRHDHGSWETRYGLLLWLSMLVMVPFDI 196          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: D0NUW3_PHYIT (Tubulin-specific chaperone D, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NUW3_PHYIT)

HSP 1 Score: 119 bits (297), Expect = 2.730e-29
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   17 AFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            AFP QV+  P+LH +F +IYQLC+VRG K VV+L+PHE S+ EP LH LQ+QD  D+S WETRY LLLWLSML LVPFD++
Sbjct:   98 AFPCQVYRNPRLHKLFQIIYQLCKVRGYKTVVKLLPHEVSDFEPTLHLLQSQDRTDHSAWETRYVLLLWLSMLCLVPFDLN 178          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: A0A5D6XM80_9STRA (TFCD_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM80_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.480e-29
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   17 AFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            AFPFQV+  P+LH +  ++Y LC+VRG K VV+L+PHEAS+ EP L  LQ+QD  D+STWETRY LLLWLSML LVPFD++
Sbjct:  113 AFPFQVYRNPRLHKLLQLVYHLCKVRGYKTVVKLLPHEASDFEPTLRLLQSQDRSDHSTWETRYVLLLWLSMLCLVPFDLN 193          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: K3WX30_GLOUD (TFCD_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX30_GLOUD)

HSP 1 Score: 117 bits (292), Expect = 1.290e-28
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   17 AFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            AFPFQV+  P+LH +F +IY LC+VRG K +V+L+PHE S+ EP L  LQ+QD  D+STWETRY LLLWLSML LVPFD++
Sbjct:  144 AFPFQVYKNPKLHKLFQLIYHLCKVRGFKTIVKLLPHEVSDFEPTLMLLQSQDRTDHSTWETRYVLLLWLSMLCLVPFDLN 224          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: A0A662Y9P7_9STRA (TFCD_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y9P7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.300e-28
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   11 GEAFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            G AFP QV+  P+LH +F +IY LC+VRG K VV+L+PHE S+ EP L  LQ+QD DD++ WETRY LLLWLSML LVPFD++
Sbjct:  259 GVAFPCQVYRDPKLHKLFQLIYHLCKVRGYKTVVKLLPHEVSDFEPTLQLLQSQDRDDHAAWETRYVLLLWLSMLCLVPFDLN 341          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: M4BSB0_HYAAE (TFCD_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BSB0_HYAAE)

HSP 1 Score: 116 bits (291), Expect = 1.760e-28
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   11 GEAFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            G AFP QV+  P+LH +F ++Y LC+VRG K VV+L+PHE S+ EP L  LQ+QD  D+STWETRY LLLWLS+L LVPFD++
Sbjct:   26 GVAFPCQVYHNPRLHKLFQIVYHLCKVRGYKTVVKLLPHEVSDFEPTLELLQSQDRSDHSTWETRYVLLLWLSILCLVPFDLN 108          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: G4Z932_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z932_PHYSP)

HSP 1 Score: 114 bits (286), Expect = 3.750e-28
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 2
Query:   11 GEAFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            G AFP QV+  P+LH +F ++Y LC+VRG K VV+L+PHE S+ EP L  LQ+QD  D+S WETRY LLLWLSML LVPFD++
Sbjct:  101 GVAFPCQVYRNPRLHKLFQLVYHLCKVRGYKTVVKLLPHEVSDFEPTLQLLQSQDRADHSAWETRYVLLLWLSMLCLVPFDLN 183          
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Match: A0A7S1CET7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CET7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.100e-28
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 2
Query:    2 GRPGEAFPFQVFICPQLHAVFCVIYQLCRVRGAKAVVRLMPHEASELEPVLHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDID 259
            G    AFPFQ+F  P+LH VF ++Y LC+ RG K VVRL+PHE ++LEPV+  L +QD   + TWETRYGLLLWLSML  VPFD++
Sbjct:  104 GAAAGAFPFQMFRSPRLHRVFQLLYLLCKTRGYKHVVRLLPHEVADLEPVVGLLLSQDQTQHGTWETRYGLLLWLSMLVRVPFDLN 189          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18260.5284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX3_ECTSI9.750e-5194.19Tubulin folding cofactor D n=1 Tax=Ectocarpus sili... [more]
A0A6H5KH41_9PHAE7.910e-3589.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WVP9_9STRA5.140e-3063.41Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
D0NUW3_PHYIT2.730e-2965.43Tubulin-specific chaperone D, putative n=2 Tax=Phy... [more]
A0A5D6XM80_9STRA9.480e-2964.20TFCD_C domain-containing protein n=1 Tax=Pythium b... [more]
K3WX30_GLOUD1.290e-2864.20TFCD_C domain-containing protein n=1 Tax=Globispor... [more]
A0A662Y9P7_9STRA1.300e-2862.65TFCD_C domain-containing protein n=2 Tax=Nothophyt... [more]
M4BSB0_HYAAE1.760e-2861.45TFCD_C domain-containing protein n=1 Tax=Hyalopero... [more]
G4Z932_PHYSP3.750e-2861.45Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S1CET7_9STRA4.100e-2859.30Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18260contigL-elsbetiae_contig18260:1872..2879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18260.5284.1prot_L-elsbetiae_contig18260.5284.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18260 1872..2879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.7867966-CDS-L-elsbetiae_contig18260:1871..19601622815761.7867966-CDS-L-elsbetiae_contig18260:1871..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18260 1872..1960 -
1691683085.7513256-CDS-L-elsbetiae_contig18260:1871..19601691683085.7513256-CDS-L-elsbetiae_contig18260:1871..1960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18260 1872..1960 -
1622815761.8045077-CDS-L-elsbetiae_contig18260:2259..24001622815761.8045077-CDS-L-elsbetiae_contig18260:2259..2400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18260 2260..2400 -
1691683085.7604916-CDS-L-elsbetiae_contig18260:2259..24001691683085.7604916-CDS-L-elsbetiae_contig18260:2259..2400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18260 2260..2400 -
1622815761.818608-CDS-L-elsbetiae_contig18260:2848..28791622815761.818608-CDS-L-elsbetiae_contig18260:2848..2879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18260 2849..2879 -
1691683085.768535-CDS-L-elsbetiae_contig18260:2848..28791691683085.768535-CDS-L-elsbetiae_contig18260:2848..2879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18260 2849..2879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18260.5284.1

>prot_L-elsbetiae_contig18260.5284.1 ID=prot_L-elsbetiae_contig18260.5284.1|Name=mRNA_L-elsbetiae_contig18260.5284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
GAAWRSLSFPGLYLPAAPRGVLRDLPAVPRERGKGGGAPHASRSIRAGAG
ASRLAGSGHRRLLHVGDPLRPATLAVHALARALRHRH
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mRNA from alignment at L-elsbetiae_contig18260:1872..2879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18260.5284.1 ID=mRNA_L-elsbetiae_contig18260.5284.1|Name=mRNA_L-elsbetiae_contig18260.5284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig18260:1872..2879- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGCCTGGAGAAGCCTTTCCTTTCCAGGTATGCCGGTGCATTCGCG CATAGTTTATCGCCGCATCGTTTTTTTGTCGGTTGTTTAACGCACGCGGT AAATACAATATTTTTGCACCGCCGAGTAGTGGAGCTTTAAGCGCGCCACC GCCATTTCCTAATATATGTGTTTTTCTCTGTGTAGGATGTCTCGATGTCT CCTCCACACGCATGAGTTTTTTCTCAGCCGATCCAGGAGAGAGTGACTTG AGCGCGGTCGACCAAAAAGGGAACCCTAGGCCTGGAAAACCCTCGGGATG TTTTAGTCGTTTACCAGGAACGGAGGAGTGTATCCCCACAGAGCGATAAT CTCGCGGCGAGGTGAAGGCACGTGCGACCCCGCTCAATCAAGCCACACCC CGGCCCGACCCCGCCGTGCTAATCGGGGCTCCTGTGTGCTGTCCTGTTTG GTTTACGTTTTGACGTGTGCGCGAAACAGGTCTTTATCTGCCCGCAGCTC CACGCGGTGTTCTGCGTGATCTACCAGCTGTGCCGCGTGAGAGGGGCAAA GGCGGTGGTGCGCCTCATGCCTCACGAAGCATCCGAGCTGGAGCCGGTGC TTCACGCCTTGCAGGCTCAGGTGAACCCCCATCCGCCGCCGTCGCTGCTT ACCGCAGCAGGCTCCCTCCCGCATGTACATGCTTGCCTTTTTCGGCGGCG AGTTCTTGCAGTTCGAGAGTGCGGCTGGGCACCAGCAGTGGCACACGCTC AATCGACATGGATCTTTTCCAGAAGGGCGTGTTGCTTGCTGCCAGTGGCA CGCTCGAGGTTTAACTTCGTGTGGAGTGTTGCTTCGCGTCAAATGATTCG TTCCCCTTCCACTTCCCCCTCCCCCTCCCCTTCCCCTTCCCCGCTTTGAC GCGCTAAATATGTATACAGGACACCGACGACTACTCCACGTGGGAGACCC GCTACGGCCTGCTACTCTGGCTGTCCATGCTCTCGCTCGTGCCCTTCGAC ATCGACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18260:1872..2879-

>mRNA_L-elsbetiae_contig18260.5284.1 ID=mRNA_L-elsbetiae_contig18260.5284.1|Name=mRNA_L-elsbetiae_contig18260.5284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig18260:1872..2879- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGGCCTGGAGAAGCCTTTCCTTTCCAGGGGGCGGCCTGGAGAAGCC
TTTCCTTTCCAGGTCTTTATCTGCCCGCAGCTCCACGCGGTGTTCTGCGT
GATCTACCAGCTGTGCCGCGTGAGAGGGGCAAAGGCGGTGGTGCGCCTCA
TGCCTCACGAAGCATCCGAGCTGGAGCCGGTGCTTCACGCCTTGCAGGCT
CAGGTCTTTATCTGCCCGCAGCTCCACGCGGTGTTCTGCGTGATCTACCA
GCTGTGCCGCGTGAGAGGGGCAAAGGCGGTGGTGCGCCTCATGCCTCACG
AAGCATCCGAGCTGGAGCCGGTGCTTCACGCCTTGCAGGCTCAGGACACC
GACGACTACTCCACGTGGGAGACCCGCTACGGCCTGCTACTCTGGCTGTC
CATGCTCTCGCTCGTGCCCTTCGACATCGACACGACACCGACGACTACTC
CACGTGGGAGACCCGCTACGGCCTGCTACTCTGGCTGTCCATGCTCTCGC
TCGTGCCCTTCGACATCGACAC
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