mRNA_L-elsbetiae_contig18256.5282.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18256.5282.1
Unique NamemRNA_L-elsbetiae_contig18256.5282.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18256.5282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18256contigL-elsbetiae_contig18256:2490..2673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.4503489-CDS-L-elsbetiae_contig18256:2489..25691622815761.4503489-CDS-L-elsbetiae_contig18256:2489..2569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18256 2490..2569 +
1691683085.4830167-CDS-L-elsbetiae_contig18256:2489..25691691683085.4830167-CDS-L-elsbetiae_contig18256:2489..2569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18256 2490..2569 +
1622815761.465455-CDS-L-elsbetiae_contig18256:2589..26711622815761.465455-CDS-L-elsbetiae_contig18256:2589..2671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18256 2590..2671 +
1691683085.4941163-CDS-L-elsbetiae_contig18256:2589..26711691683085.4941163-CDS-L-elsbetiae_contig18256:2589..2671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18256 2590..2671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18256.5282.1prot_L-elsbetiae_contig18256.5282.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18256 2490..2671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18256.5282.1

>prot_L-elsbetiae_contig18256.5282.1 ID=prot_L-elsbetiae_contig18256.5282.1|Name=mRNA_L-elsbetiae_contig18256.5282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
HFFHSWIFPRHFQCANSSPVPAGNIKQARSTKRCITQPDPIRRHTLDVVK
TQGR
back to top

mRNA from alignment at L-elsbetiae_contig18256:2490..2673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18256.5282.1 ID=mRNA_L-elsbetiae_contig18256.5282.1|Name=mRNA_L-elsbetiae_contig18256.5282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=184bp|location=Sequence derived from alignment at L-elsbetiae_contig18256:2490..2673+ (Laminarionema elsbetiae ELsaHSoW15)
CACTTTTTTCATAGTTGGATATTTCCACGTCATTTTCAATGCGCAAACAG
CTCCCCTGTACCGGCTGGAAACATCAAACAGCGTGCTCGACAAATCTTAG
AGCGCGCTCGACAAAACGATGCATCACCCAGCCCGATCCCATCCGGCGCC
ATACGCTAGATGTAGTCAAAACTCAAGGGCGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18256:2490..2673+

>mRNA_L-elsbetiae_contig18256.5282.1 ID=mRNA_L-elsbetiae_contig18256.5282.1|Name=mRNA_L-elsbetiae_contig18256.5282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig18256:2490..2673+ (Laminarionema elsbetiae ELsaHSoW15)
CACTTTTTTCATAGTTGGATATTTCCACGTCATTTTCAATGCGCAAACAG
CTCCCCTGTACCGGCTGGAAACATCAAACACACTTTTTTCATAGTTGGAT
ATTTCCACGTCATTTTCAATGCGCAAACAGCTCCCCTGTACCGGCTGGAA
ACATCAAACAAGCGCGCTCGACAAAACGATGCATCACCCAGCCCGATCCC
ATCCGGCGCCATACGCTAGATGTAGTCAAAACTCAAGGGCGTAGCGCGCT
CGACAAAACGATGCATCACCCAGCCCGATCCCATCCGGCGCCATACGCTA
GATGTAGTCAAAACTCAAGGGCGT
back to top