prot_L-elsbetiae_contig18244.5276.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18244.5276.1
Unique Nameprot_L-elsbetiae_contig18244.5276.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length98
Homology
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BLAST of mRNA_L-elsbetiae_contig18244.5276.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.400e-28
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = 0 
Query:   15 DYIPVNTVDEESLKLPEEPPSLRVIGSAPASTVRRHFYMDDTLVVVPEPGSGQAAGAIASLANALRNLGQVCV 87
            DYIPVN+VDE SLKLP+EPPSL+V+G  P+S+V RHFYMDDT VV+PEPGSGQAAGAI+SL++A+RNL QV V
Sbjct:  282 DYIPVNSVDEGSLKLPDEPPSLKVLGFTPSSSVERHFYMDDTFVVLPEPGSGQAAGAISSLSSAMRNLDQVAV 354
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BLAST of mRNA_L-elsbetiae_contig18244.5276.1 vs. uniprot
Match: W1PH02_AMBTC (Ku domain-containing protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1PH02_AMBTC)

HSP 1 Score: 57.4 bits (137), Expect = 1.770e-7
Identity = 26/71 (36.62%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:   17 IPVNTVDEESLKLPEEPPSLRVIGSAPASTVRRHFYMDDTLVVVPEPGSGQAAGAIASLANALRNLGQVCV 87
            +P+++ + E+LK   E   ++++G   AS +RRH YM DT V +PEPG+ +A  A++++A A++N  +V +
Sbjct:  295 VPISSAELEALKFKPEK-GIKLLGFTNASNIRRHQYMRDTYVFIPEPGNRKAILAVSTMARAMKNANKVSI 364
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18244.5276.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE2.400e-2875.34Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
W1PH02_AMBTC1.770e-736.62Ku domain-containing protein n=2 Tax=Amborella tri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016194SPOC-like, C-terminal domain superfamilyGENE3D2.40.290.10coord: 8..93
e-value: 3.5E-16
score: 61.4
IPR016194SPOC-like, C-terminal domain superfamilySUPERFAMILY100939SPOC domain-likecoord: 13..91
IPR006164Ku70/Ku80 beta-barrel domainPFAMPF02735Kucoord: 14..91
e-value: 4.4E-9
score: 36.3
NoneNo IPR availablePANTHERPTHR12604KU AUTOANTIGEN DNA HELICASEcoord: 14..91
NoneNo IPR availablePANTHERPTHR12604:SF4X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5coord: 14..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18244contigL-elsbetiae_contig18244:58..351 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18244.5276.1mRNA_L-elsbetiae_contig18244.5276.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18244 58..351 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18244.5276.1 ID=prot_L-elsbetiae_contig18244.5276.1|Name=mRNA_L-elsbetiae_contig18244.5276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
PNPPPPPKKKKKKKDYIPVNTVDEESLKLPEEPPSLRVIGSAPASTVRRH
FYMDDTLVVVPEPGSGQAAGAIASLANALRNLGQVCVCVCVCVCVCA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016194SPOC-like_C_dom_sf
IPR006164Ku70/Ku80_beta-barrel_dom