mRNA_L-elsbetiae_contig1054.527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1054.527.1
Unique NamemRNA_L-elsbetiae_contig1054.527.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A6H5KVV4_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVV4_9PHAE)

HSP 1 Score: 507 bits (1306), Expect = 1.530e-167
Identity = 362/611 (59.25%), Postives = 398/611 (65.14%), Query Frame = 2 
Query:  692 MRPMPVKFEHARDVTVRTQKK---QRSSSTGGSGAAAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQHQLLSKVRRQKVKRDLAVEARAAQRLARASGGSDCGEEDSEHGG-LSGRGRVRAAAQADLRPIRRXXXXXXXXXXXXXXXXXXXXXXXXXXSRRSALRRRVDARPSTRVGGVGGGIGARYTQDSNSDESSN------DDVWPAESNAGGQEQASXXXXDDRLEWGGGYSN-----WRQQVPGSPERSPRELHHVSTPMTFASQSEYGHSPGGS-SGFDRTSSVGSSMASSLSFTS----SPSPSDMMFHSSSPY--RLNDCDE-GGHSDST----SPVSTHSPVGQKGVTTVKEAAAA---GTQVSPAQQRQRDNDLSLAAVVDATVSGWGSPHQSSSLPRLEQFGWGTGNLAV--DVGGGSSLSDPLVSGMPQHHQSAHGSPHQEDFGFIELFAANWDAGEGTSPSSSSPSSIGSAGMLSXXXXXXXXXXXXXXXSGADIDGASDAFLQEAQAAGVFGGVDEFLVPRSS-GGALGGYG 2425
            MRPMPVKF+ A +     Q +   Q  SSTGG G  AFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQ  LLSKVRRQKVKRDLAVEARAAQRLAR  GG      ++     LSGRGR RAAAQADLRPIRR         XXXXXXXXXXXXXXXXX                                              +  WP +S AGG E+ S     D     G   N     WR+QVPGSP RSP  L HV TP T  S S+Y HSP G   G DRTSSV SS+ASSLSF+S    SPS SD  F  SSPY  R  DCDE GGHSD      SP+S HSPVGQ  V TV+ AAAA    TQ SPA Q Q D DLSLAAVVDA+++GW SPHQSS L  LEQFGWG  N+ +  D GG  S      +G+P HHQ +  SPHQEDFGFI+LFAANWD  +G S  S +P+S   +G+ +         XXXXX  G +++  SDAFL+EAQAAGVF GV++ LVPRSS GG  G +G
Sbjct:    1 MRPMPVKFQGAGEAPSMKQHQAQHQELSSTGGGGGTAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRRKGAHAGAFHHPSFRRGQRHLLSKVRRQKVKRDLAVEARAAQRLARVKGGXXXXXXNAFVASQLSGRGRTRAAAQADLRPIRRGRKLEDDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGTWPTQSTAGGLERVSSGDSKDERLCRGQPDNMNNDHWREQVPGSPARSPTGLQHVLTPTTMTSPSDYEHSPVGDFGGLDRTSSVSSSLASSLSFSSAGSCSPSQSDTTFDPSSPYLFRDTDCDESGGHSDPIINQHSPMSIHSPVGQA-VATVQAAAAAVAKATQTSPAMQ-QYDQDLSLAAVVDASLNGWNSPHQSSPLSHLEQFGWGAANITIPGDAGGPWSSEPSPATGVPIHHQLSQASPHQEDFGFIDLFAANWDPNDGGSAPSCTPASSTYSGVRASSPPDNSKSXXXXX-DGRNMND-SDAFLKEAQAAGVFIGVEDLLVPRSSVGGGAGSFG 607
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 105 bits (261), Expect = 2.560e-20
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:  809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            R G RG PQ FA+KL+ ++E E  +++ W   G AF V+DI RFS E+L KYF HSKF SFQRQLNLY F++  +G+ AG++ H  FR+G+  LLS VRR
Sbjct:    5 RTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRR 104
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.040e-20
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:  809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRR-KGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            R G RG PQ FA KLF L+  E  +IV W P GLAFR+ D+++F+ E L KYF H+   SFQRQLNLY F++  KG  +G F H SF+R + +LL +VRR
Sbjct:   19 RFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRR 118
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.960e-20
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 2 
Query:  809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            R G RG PQ+F +KLF L+E+EDS ++ W  +G  F ++D+  F+ E LE+YF H KFTSFQRQLNLY F++  KG   G + HP F+R   + LSKVRR
Sbjct:   50 RTGKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRR 149
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.880e-19
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            R G RG PQ+F +KL+ ++  E  +I+ W   G +F +K+++ F   +L KYF H K++SFQRQLNLY F++ +KG   G++ H  F R Q +LL+KVRR
Sbjct:    5 RTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR 104
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.270e-19
Identity = 66/178 (37.08%), Postives = 95/178 (53.37%), Query Frame = 2 
Query:  581 PQPLTPNF--NSRWHQKS*APRQPLSATALLTPASSSSKMRPMPVKFEHARDVTVRTQKKQRSSSTGGSGAAAFSPTRRVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            P PL+ N   ++RW+  +   R P  ++A+  PA    ++RP  +   H    TV        S  GG+G +      R G RG PQ+F +KL+ +++ E  + + W   G +F +KD++ F   VL KYF H KF+SFQRQLNLY F++  KG   GA+ H  F R Q   L  VRR
Sbjct:    3 PAPLSANLPLSARWYPPN---RGPHPSSAMPGPAQ---QLRPRRISARHKESSTV--------SHRGGAGKSDAMRYPRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRR 166
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.880e-18
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 2 
Query:  809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKRR-KGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            R+G RG PQ FA+KL  ++  E +  + W  +G AF+V D++RFS ++L KY+ HSKF+SFQRQLNLY F++  KGA AG + HP FRR +   L  VRR
Sbjct:   33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRR 132
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.690e-18
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  815 GARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            G RG PQ F ++L+ L++EED+ +V W+ +G  F + D+  F    L KYF H+K+TSFQRQ NLY F++  +G  AG + H  F++G+ + L KVRR
Sbjct:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 98
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A812YT23_SYMMI (HSF2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YT23_SYMMI)

HSP 1 Score: 96.3 bits (238), Expect = 7.750e-18
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 2 
Query:  839 FAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            F QKLF L+E E +++V W   GL+FRV D ++F+ EV+ KYF H+K TSFQRQLNLY F+R  KG   G+++HP F+RG+   +S+++R
Sbjct:   13 FPQKLFALMEMEPADVVCWTERGLSFRVVDPEKFAEEVVPKYFRHTKMTSFQRQLNLYGFRRVTKGEDTGSYYHPKFQRGRRDFISEIKR 102
[Close]
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.360e-17
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:  809 RVGARGGPQLFAQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSFQRQLNLYQFKR-RKGAHAGAFHHPSFRRGQHQLLSKVRR 1105
            R G RG PQ+FA+KL+ +++ E  + + W   G +F +K++  F   VL KYF H K++SFQRQLNLY F++  KG+ AGA+ H SF RGQ +LL  VRR
Sbjct:  159 RTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRR 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1054.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVV4_9PHAE1.530e-16759.25HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
A0A6V1QFS1_HETAK2.560e-2054.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YGA3_9STRA6.040e-2053.00HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7R9YBQ9_9STRA8.960e-2052.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2BSE7_9STRA6.880e-1945.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2R5C8_9STRA8.270e-1937.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5KMN3_9PHAE2.880e-1851.00HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A835Z6Z9_9STRA6.690e-1844.90HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A812YT23_SYMMI7.750e-1851.11HSF2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S2WU52_9STRA2.360e-1749.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1054contigL-elsbetiae_contig1054:6837..10336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.6e-16
Seed eggNOG ortholog2850.Phatr42714
KEGG koko:K09419
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heat shock factor
EggNOG OGs2XG5V@2836,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-06_001080.1
Exons2
Model size2449
Cds size1758
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1054.527.1prot_L-elsbetiae_contig1054.527.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1054 6837..9645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.5329213-CDS-L-elsbetiae_contig1054:6836..83141622815277.5329213-CDS-L-elsbetiae_contig1054:6836..8314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1054 6837..8314 -
1691682812.3389974-CDS-L-elsbetiae_contig1054:6836..83141691682812.3389974-CDS-L-elsbetiae_contig1054:6836..8314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1054 6837..8314 -
1622815277.544374-CDS-L-elsbetiae_contig1054:9365..96451622815277.544374-CDS-L-elsbetiae_contig1054:9365..9645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1054 9366..9645 -
1691682812.353113-CDS-L-elsbetiae_contig1054:9365..96451691682812.353113-CDS-L-elsbetiae_contig1054:9365..9645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1054 9366..9645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.5533464-UTR-L-elsbetiae_contig1054:9645..103361622815277.5533464-UTR-L-elsbetiae_contig1054:9645..10336Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1054 9646..10336 -
1691682812.362843-UTR-L-elsbetiae_contig1054:9645..103361691682812.362843-UTR-L-elsbetiae_contig1054:9645..10336Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1054 9646..10336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1054.527.1

>prot_L-elsbetiae_contig1054.527.1 ID=prot_L-elsbetiae_contig1054.527.1|Name=mRNA_L-elsbetiae_contig1054.527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=586bp
MRPMPVKFEHARDVTVRTQKKQRSSSTGGSGAAAFSPTRRVGARGGPQLF
AQKLFTLVEEEDSEIVEWLPDGLAFRVKDIQRFSCEVLEKYFNHSKFTSF
QRQLNLYQFKRRKGAHAGAFHHPSFRRGQHQLLSKVRRQKVKRDLAVEAR
AAQRLARASGGSDCGEEDSEHGGLSGRGRVRAAAQADLRPIRRRHHRQME
DDGNDEYASDEDDEFTAAGSRRSALRRRVDARPSTRVGGVGGGIGARYTQ
DSNSDESSNDDVWPAESNAGGQEQASSGDDDDRLEWGGGYSNWRQQVPGS
PERSPRELHHVSTPMTFASQSEYGHSPGGSSGFDRTSSVGSSMASSLSFT
SSPSPSDMMFHSSSPYRLNDCDEGGHSDSTSPVSTHSPVGQKGVTTVKEA
AAAGTQVSPAQQRQRDNDLSLAAVVDATVSGWGSPHQSSSLPRLEQFGWG
TGNLAVDVGGGSSLSDPLVSGMPQHHQSAHGSPHQEDFGFIELFAANWDA
GEGTSPSSSSPSSIGSAGMLSSSPGSNNSGGGAGGSSGADIDGASDAFLQ
EAQAAGVFGGVDEFLVPRSSGGALGGYGCHSSEYA*
back to top

mRNA from alignment at L-elsbetiae_contig1054:6837..10336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1054.527.1 ID=mRNA_L-elsbetiae_contig1054.527.1|Name=mRNA_L-elsbetiae_contig1054.527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3500bp|location=Sequence derived from alignment at L-elsbetiae_contig1054:6837..10336- (Laminarionema elsbetiae ELsaHSoW15)
ACTGTTGTGTCTGTCACATAGACTTCTACACATATCTAGACCATCCACAT
AGTCTGATGATTTTGCATTTTTGACAACAACCGCTGGAAACCAACGTCGC
TTTATTATGTATATATTCAAAGGGTTGAATGTTTCGGAATTTTCTTGTGC
ATCATCCACGCACAGCTAGCAATCGTCTACACACATCACCACCAGTCAAC
CTGAAGATACGCACGGCGAAAGCTGTCTACTTTGATACACGATATCCCCT
CTCTCCACAGAGGCTTTGTGTGTCGTTCGCATTTGTCGAAAGACCTGCCG
CTTGATGGCCGGTCTCTGCCGTTTTTTTTCAGGTCGGTCTGGATCACGGG
ATCTTTTTTTCGTATTTACCTGGGTCTACGATTTCCCCAGGGGCGCACAC
ACATCCTTGCACCTCGAATTCCCCTGCCAAGCCCTACCCGTACCAGACTT
AATACGGATGGCGGGAGACCTCGTGCTTCTACATCACTTCGCAGAATGAC
GTTTACTGCGGGCATGTGTGGTCCCGCTCTTTCGCCTGCCGCTAGCTGGT
ACCCCTTACGTAAGCGCAGCTCACATCCACCCACAACCCCTTACTCCAAA
TTTCAACTCACGCTGGCACCAAAAATCCTGAGCGCCTCGCCAGCCTCTCT
CTGCTACTGCACTACTAACGCCAGCGTCATCGTCAAGCAAGATGCGTCCT
ATGCCCGTGAAGTTCGAACATGCCAGGGACGTGACAGTCAGGACGCAGAA
GAAGCAGCGCTCGTCGAGCACAGGCGGCAGCGGCGCCGCCGCCTTCAGTC
CCACTCGCAGGGTTGGAGCCCGCGGCGGGCCTCAGTTGTTCGCGCAGAAG
CTGTTCACGCTCGTGGAAGAAGAGGATTCCGAGATCGTGGAGTGGCTGCC
TGATGGCTTGGCCTTTCGCGTGAAGGACATACAACGCTTCAGTTGCGAGG
TCTTGGAGAAATACTTTAACCGTGAGTGCGTGGTTTTGTGTGTGTGTGTC
TGTGTGCAGGTCCTACATATGTACATGTTTGGTGGGTTGTTGGATGCCCC
ACCGTTGTGCCTGTGTAATCAGAAACAACAACAACAGCAGTATGCGCCAG
CCGCTTCCGGGGTACGATGATTCGCCGAGACAGCTACACAACAGTAGTAA
ATCGAAACCAGTCAGCAGCAGCATGTGCGGAAAATGTACGACCGAGCGGT
GACCCCGGCGCGACCGATACAACTCTGTTAACAGTCGAATGGGAGCGGAT
CGCGGTCTGGGTACCACGCTTTCTTACATCTCCGGTATCGTGGGTCTCTC
GATTTCCTCGGCAGGAGCGTGTGCCTATCGAGCCTCGCTCTTGTTATGTA
CCCGATCTGTGCTACAGCAGTAGTTCCGGCTCCCCTTGCGCACGGGGCTG
CTCTTGCGGGGGGATATTCCAATATCTACCAGGTGTTGCCGACAGCATGC
ATCAGTCTCCGGTTCACGCGATTCGCGGTTCACCTTCCCCTGAAGAAACG
AAAACAGTGCTTGTATTTTTCCCGACACGGCCAACGAAAAGCATGAGCAC
TCGCATGGTAAATCTTTGCAGCACTGCTGTTCTTCGCTTTGACGGCCTCG
TCCCCGTGAAGCCTGGTGGTAGACGACAACGACCTGTGTAGACATGTGCC
GCTCTTACCTTCCGACCGCTCGCCGTCGGATGAAACGCCGACCACCGCAC
ATTGGGTACCTCGTCGAACTTCACCAGCACCCCCTGCGAAGTGTAGCATC
TACTGTTATCTCTCCCAATCATGTGGTGCGCCTTTGTCTCGCTTCCGGTG
CGTGCTTTCATCTGCCCGGCGCTGTAGAGCTCTAGAGCGGCGCCCGTGGG
AAACAAAAACGAATATGCCGTTCACACCACTGCATCTACAATCTACTTCG
CAAGAGGTATCCACTCTTCTTCCCTTACCCCTTCTCCGCGCCCCACGCCG
TGTCCCGCCCAAACGTTCAACGCCGACCTTTTTTTTTTCTCTGTTTCTGC
TCCGTCGCCGTTGAACATGCAGACTCGAAGTTCACGTCGTTCCAGCGCCA
GCTCAACCTCTACCAGTTCAAGCGCCGGAAGGGGGCACACGCCGGCGCTT
TCCACCACCCCAGCTTCCGCAGGGGCCAGCACCAGCTCCTCTCCAAGGTC
CGGCGCCAGAAGGTGAAGCGCGACCTCGCCGTCGAGGCGCGTGCCGCGCA
GCGCCTGGCGCGCGCCAGCGGCGGCAGCGACTGCGGGGAGGAGGACTCCG
AGCACGGGGGGCTGTCCGGGCGGGGAAGGGTCAGGGCGGCCGCGCAAGCC
GACCTCCGCCCGATTCGCCGCCGCCACCACCGGCAGATGGAAGACGACGG
CAACGACGAGTACGCGTCCGACGAGGACGACGAGTTCACGGCGGCGGGGT
CCCGGCGCAGCGCGTTGCGCCGCCGCGTGGACGCCAGGCCCTCCACCCGC
GTTGGCGGCGTCGGCGGCGGGATCGGTGCGAGGTACACTCAGGACAGCAA
CAGCGACGAGAGCTCCAACGACGACGTGTGGCCCGCCGAGAGCAACGCCG
GCGGCCAGGAGCAGGCCTCGAGCGGCGACGACGACGACCGGCTGGAGTGG
GGCGGGGGCTACAGCAACTGGCGGCAGCAAGTCCCCGGGTCGCCCGAGAG
GTCGCCGAGGGAGCTGCACCATGTGTCCACTCCGATGACCTTTGCCTCTC
AGTCCGAGTACGGGCACTCTCCCGGCGGCAGCAGCGGCTTCGACCGGACT
TCCTCCGTGGGTTCCTCCATGGCCTCGTCGCTGTCCTTCACGTCTTCACC
GAGCCCCTCCGACATGATGTTCCACTCCAGCAGCCCGTACCGGCTCAACG
ACTGCGACGAGGGCGGCCACAGCGACTCCACCTCGCCGGTGTCGACTCAT
TCGCCGGTCGGGCAGAAGGGCGTTACCACCGTGAAGGAAGCAGCGGCGGC
GGGAACCCAGGTGTCTCCCGCTCAGCAACGGCAGCGCGACAACGACCTGT
CCCTCGCGGCGGTGGTGGACGCAACGGTCAGCGGGTGGGGCTCGCCGCAC
CAGTCCTCGTCGCTCCCGCGCCTGGAGCAGTTCGGGTGGGGGACCGGGAA
CTTGGCCGTGGACGTGGGGGGGGGGTCATCCTTGTCCGACCCGTTGGTCT
CCGGGATGCCGCAACACCACCAGTCGGCTCACGGATCCCCGCACCAAGAG
GACTTCGGCTTCATCGAGCTGTTTGCTGCCAACTGGGACGCTGGCGAGGG
CACGTCGCCTTCGTCTTCGTCTCCGTCTTCGATTGGCTCCGCGGGGATGC
TCTCCTCTTCCCCCGGCAGCAACAACTCCGGCGGCGGCGCGGGCGGCAGC
AGCGGGGCTGACATCGACGGCGCGAGCGACGCTTTCTTGCAAGAAGCGCA
GGCCGCTGGGGTGTTCGGCGGTGTTGATGAATTTCTTGTCCCTCGCAGTA
GCGGTGGTGCTCTCGGTGGCTATGGTTGTCACTCCTCCGAATACGCTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1054:6837..10336-

>mRNA_L-elsbetiae_contig1054.527.1 ID=mRNA_L-elsbetiae_contig1054.527.1|Name=mRNA_L-elsbetiae_contig1054.527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3516bp|location=Sequence derived from alignment at L-elsbetiae_contig1054:6837..10336- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCCTATGCCCGTGAAGTTCGAACATGCCAGGGACGTGACAGTCAG
GACGCAGAAGAAGCAGCGCTCGTCGAGCACAGGCGGCAGCGGCGCCGCCG
CCTTCAGTCCCACTCGCAGGGTTGGAGCCCGCGGCGGGCCTCAGTTGTTC
GCGCAGAAGCTGTTCACGCTCGTGGAAGAAGAGGATTCCGAGATCGTGGA
GTGGCTGCCTGATGGCTTGGCCTTTCGCGTGAAGGACATACAACGCTTCA
GTTGCGAGGTCTTGGAGAAATACTTTAACCATGCGTCCTATGCCCGTGAA
GTTCGAACATGCCAGGGACGTGACAGTCAGGACGCAGAAGAAGCAGCGCT
CGTCGAGCACAGGCGGCAGCGGCGCCGCCGCCTTCAGTCCCACTCGCAGG
GTTGGAGCCCGCGGCGGGCCTCAGTTGTTCGCGCAGAAGCTGTTCACGCT
CGTGGAAGAAGAGGATTCCGAGATCGTGGAGTGGCTGCCTGATGGCTTGG
CCTTTCGCGTGAAGGACATACAACGCTTCAGTTGCGAGGTCTTGGAGAAA
TACTTTAACCACTCGAAGTTCACGTCGTTCCAGCGCCAGCTCAACCTCTA
CCAGTTCAAGCGCCGGAAGGGGGCACACGCCGGCGCTTTCCACCACCCCA
GCTTCCGCAGGGGCCAGCACCAGCTCCTCTCCAAGGTCCGGCGCCAGAAG
GTGAAGCGCGACCTCGCCGTCGAGGCGCGTGCCGCGCAGCGCCTGGCGCG
CGCCAGCGGCGGCAGCGACTGCGGGGAGGAGGACTCCGAGCACGGGGGGC
TGTCCGGGCGGGGAAGGGTCAGGGCGGCCGCGCAAGCCGACCTCCGCCCG
ATTCGCCGCCGCCACCACCGGCAGATGGAAGACGACGGCAACGACGAGTA
CGCGTCCGACGAGGACGACGAGTTCACGGCGGCGGGGTCCCGGCGCAGCG
CGTTGCGCCGCCGCGTGGACGCCAGGCCCTCCACCCGCGTTGGCGGCGTC
GGCGGCGGGATCGGTGCGAGGTACACTCAGGACAGCAACAGCGACGAGAG
CTCCAACGACGACGTGTGGCCCGCCGAGAGCAACGCCGGCGGCCAGGAGC
AGGCCTCGAGCGGCGACGACGACGACCGGCTGGAGTGGGGCGGGGGCTAC
AGCAACTGGCGGCAGCAAGTCCCCGGGTCGCCCGAGAGGTCGCCGAGGGA
GCTGCACCATGTGTCCACTCCGATGACCTTTGCCTCTCAGTCCGAGTACG
GGCACTCTCCCGGCGGCAGCAGCGGCTTCGACCGGACTTCCTCCGTGGGT
TCCTCCATGGCCTCGTCGCTGTCCTTCACGTCTTCACCGAGCCCCTCCGA
CATGATGTTCCACTCCAGCAGCCCGTACCGGCTCAACGACTGCGACGAGG
GCGGCCACAGCGACTCCACCTCGCCGGTGTCGACTCATTCGCCGGTCGGG
CAGAAGGGCGTTACCACCGTGAAGGAAGCAGCGGCGGCGGGAACCCAGGT
GTCTCCCGCTCAGCAACGGCAGCGCGACAACGACCTGTCCCTCGCGGCGG
TGGTGGACGCAACGGTCAGCGGGTGGGGCTCGCCGCACCAGTCCTCGTCG
CTCCCGCGCCTGGAGCAGTTCGGGTGGGGGACCGGGAACTTGGCCGTGGA
CGTGGGGGGGGGGTCATCCTTGTCCGACCCGTTGGTCTCCGGGATGCCGC
AACACCACCAGTCGGCTCACGGATCCCCGCACCAAGAGGACTTCGGCTTC
ATCGAGCTGTTTGCTGCCAACTGGGACGCTGGCGAGGGCACGTCGCCTTC
GTCTTCGTCTCCGTCTTCGATTGGCTCCGCGGGGATGCTCTCCTCTTCCC
CCGGCAGCAACAACTCCGGCGGCGGCGCGGGCGGCAGCAGCGGGGCTGAC
ATCGACGGCGCGAGCGACGCTTTCTTGCAAGAAGCGCAGGCCGCTGGGGT
GTTCGGCGGTGTTGATGAATTTCTTGTCCCTCGCAGTAGCGGTGGTGCTC
TCGGTGGCTATGGTTGTCACTCCTCCGAATACGCTTGAACTCGAAGTTCA
CGTCGTTCCAGCGCCAGCTCAACCTCTACCAGTTCAAGCGCCGGAAGGGG
GCACACGCCGGCGCTTTCCACCACCCCAGCTTCCGCAGGGGCCAGCACCA
GCTCCTCTCCAAGGTCCGGCGCCAGAAGGTGAAGCGCGACCTCGCCGTCG
AGGCGCGTGCCGCGCAGCGCCTGGCGCGCGCCAGCGGCGGCAGCGACTGC
GGGGAGGAGGACTCCGAGCACGGGGGGCTGTCCGGGCGGGGAAGGGTCAG
GGCGGCCGCGCAAGCCGACCTCCGCCCGATTCGCCGCCGCCACCACCGGC
AGATGGAAGACGACGGCAACGACGAGTACGCGTCCGACGAGGACGACGAG
TTCACGGCGGCGGGGTCCCGGCGCAGCGCGTTGCGCCGCCGCGTGGACGC
CAGGCCCTCCACCCGCGTTGGCGGCGTCGGCGGCGGGATCGGTGCGAGGT
ACACTCAGGACAGCAACAGCGACGAGAGCTCCAACGACGACGTGTGGCCC
GCCGAGAGCAACGCCGGCGGCCAGGAGCAGGCCTCGAGCGGCGACGACGA
CGACCGGCTGGAGTGGGGCGGGGGCTACAGCAACTGGCGGCAGCAAGTCC
CCGGGTCGCCCGAGAGGTCGCCGAGGGAGCTGCACCATGTGTCCACTCCG
ATGACCTTTGCCTCTCAGTCCGAGTACGGGCACTCTCCCGGCGGCAGCAG
CGGCTTCGACCGGACTTCCTCCGTGGGTTCCTCCATGGCCTCGTCGCTGT
CCTTCACGTCTTCACCGAGCCCCTCCGACATGATGTTCCACTCCAGCAGC
CCGTACCGGCTCAACGACTGCGACGAGGGCGGCCACAGCGACTCCACCTC
GCCGGTGTCGACTCATTCGCCGGTCGGGCAGAAGGGCGTTACCACCGTGA
AGGAAGCAGCGGCGGCGGGAACCCAGGTGTCTCCCGCTCAGCAACGGCAG
CGCGACAACGACCTGTCCCTCGCGGCGGTGGTGGACGCAACGGTCAGCGG
GTGGGGCTCGCCGCACCAGTCCTCGTCGCTCCCGCGCCTGGAGCAGTTCG
GGTGGGGGACCGGGAACTTGGCCGTGGACGTGGGGGGGGGGTCATCCTTG
TCCGACCCGTTGGTCTCCGGGATGCCGCAACACCACCAGTCGGCTCACGG
ATCCCCGCACCAAGAGGACTTCGGCTTCATCGAGCTGTTTGCTGCCAACT
GGGACGCTGGCGAGGGCACGTCGCCTTCGTCTTCGTCTCCGTCTTCGATT
GGCTCCGCGGGGATGCTCTCCTCTTCCCCCGGCAGCAACAACTCCGGCGG
CGGCGCGGGCGGCAGCAGCGGGGCTGACATCGACGGCGCGAGCGACGCTT
TCTTGCAAGAAGCGCAGGCCGCTGGGGTGTTCGGCGGTGTTGATGAATTT
CTTGTCCCTCGCAGTAGCGGTGGTGCTCTCGGTGGCTATGGTTGTCACTC
CTCCGAATACGCTTGA
back to top