mRNA_L-elsbetiae_contig18221.5266.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18221.5266.1
Unique NamemRNA_L-elsbetiae_contig18221.5266.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18221.5266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18221contigL-elsbetiae_contig18221:2544..3160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18221.5266.1prot_L-elsbetiae_contig18221.5266.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18221 2573..2944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.4015744-UTR-L-elsbetiae_contig18221:2543..25721622815760.4015744-UTR-L-elsbetiae_contig18221:2543..2572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18221 2544..2572 +
1691683084.9074004-UTR-L-elsbetiae_contig18221:2543..25721691683084.9074004-UTR-L-elsbetiae_contig18221:2543..2572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18221 2544..2572 +
1622815760.4287567-UTR-L-elsbetiae_contig18221:2944..31601622815760.4287567-UTR-L-elsbetiae_contig18221:2944..3160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18221 2945..3160 +
1691683084.9273841-UTR-L-elsbetiae_contig18221:2944..31601691683084.9273841-UTR-L-elsbetiae_contig18221:2944..3160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18221 2945..3160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.4178143-CDS-L-elsbetiae_contig18221:2572..29441622815760.4178143-CDS-L-elsbetiae_contig18221:2572..2944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18221 2573..2944 +
1691683084.9161656-CDS-L-elsbetiae_contig18221:2572..29441691683084.9161656-CDS-L-elsbetiae_contig18221:2572..2944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18221 2573..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18221.5266.1

>prot_L-elsbetiae_contig18221.5266.1 ID=prot_L-elsbetiae_contig18221.5266.1|Name=mRNA_L-elsbetiae_contig18221.5266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MNCYPIDQPCPAELRTYRARKSLAGWKFISSTATSLATEPHTTTTQVLGR
LAHLRKRITHDKMCQLQSKPIRFAQLTSAIRHQGTYLPICQATRTATPVH
ARKTTAPSRPQRAGGSTYADCPM*
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mRNA from alignment at L-elsbetiae_contig18221:2544..3160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18221.5266.1 ID=mRNA_L-elsbetiae_contig18221.5266.1|Name=mRNA_L-elsbetiae_contig18221.5266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=617bp|location=Sequence derived from alignment at L-elsbetiae_contig18221:2544..3160+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCATTTCGCTTGCTCCACAAGTCAAATGAACTGTTATCCAATCGAT
CAACCATGCCCTGCAGAATTACGCACATATCGAGCACGAAAATCTTTAGC
TGGCTGGAAGTTCATTTCTTCAACTGCCACTTCTTTGGCAACTGAACCAC
ACACCACAACCACACAAGTGCTGGGTAGACTAGCTCACCTCCGAAAAAGA
ATTACCCACGACAAAATGTGCCAACTTCAAAGCAAACCAATACGCTTCGC
CCAACTGACTTCCGCTATACGGCATCAAGGAACATATCTTCCCATTTGTC
AGGCAACGCGGACAGCGACTCCTGTTCATGCCAGGAAAACAACTGCTCCA
TCAAGACCACAAAGGGCCGGAGGCAGTACATACGCAGACTGCCCAATGTG
AAAGAATACCTCCAACAAAACAATTACACATGTATCCCACAAATCAATGT
ACACTATCCAGAAGGTGAGAAACACGCGCGATGTATGCCACCGACACCTT
CCACTCCAGATTAGAGCCTACGCTACAGTAGAACTCCTATATCATCTTCG
AGTATCGCGCTTCAAGGGTGTCCTCACTTCTCGAAAGCCAAAACCACCCA
TCTCCCCACTGCTGATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18221:2544..3160+

>mRNA_L-elsbetiae_contig18221.5266.1 ID=mRNA_L-elsbetiae_contig18221.5266.1|Name=mRNA_L-elsbetiae_contig18221.5266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig18221:2544..3160+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTGTTATCCAATCGATCAACCATGCCCTGCAGAATTACGCACATA
TCGAGCACGAAAATCTTTAGCTGGCTGGAAGTTCATTTCTTCAACTGCCA
CTTCTTTGGCAACTGAACCACACACCACAACCACACAAGTGCTGGGTAGA
CTAGCTCACCTCCGAAAAAGAATTACCCACGACAAAATGTGCCAACTTCA
AAGCAAACCAATACGCTTCGCCCAACTGACTTCCGCTATACGGCATCAAG
GAACATATCTTCCCATTTGTCAGGCAACGCGGACAGCGACTCCTGTTCAT
GCCAGGAAAACAACTGCTCCATCAAGACCACAAAGGGCCGGAGGCAGTAC
ATACGCAGACTGCCCAATGTGAATGAACTGTTATCCAATCGATCAACCAT
GCCCTGCAGAATTACGCACATATCGAGCACGAAAATCTTTAGCTGGCTGG
AAGTTCATTTCTTCAACTGCCACTTCTTTGGCAACTGAACCACACACCAC
AACCACACAAGTGCTGGGTAGACTAGCTCACCTCCGAAAAAGAATTACCC
ACGACAAAATGTGCCAACTTCAAAGCAAACCAATACGCTTCGCCCAACTG
ACTTCCGCTATACGGCATCAAGGAACATATCTTCCCATTTGTCAGGCAAC
GCGGACAGCGACTCCTGTTCATGCCAGGAAAACAACTGCTCCATCAAGAC
CACAAAGGGCCGGAGGCAGTACATACGCAGACTGCCCAATGTGA
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