mRNA_L-elsbetiae_contig1822.5263.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1822.5263.1 vs. uniprot
Match: D8LQ96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ96_ECTSI) HSP 1 Score: 820 bits (2118), Expect = 4.960e-237 Identity = 858/1832 (46.83%), Postives = 1021/1832 (55.73%), Query Frame = 3 Query: 6459 VANCFRSSASRLTKITRVCGERDRALLFRGWSRVCLHAASLSAAEGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEAHRENSRGSMLETELKVKVKDVEKITRVCGERDRSLMFRGWSRLCLHAASLSAAEGASAAATAVARATRAEAMEKEAEGAAHXXXXXXXXXXXXXXXXXXXEKAQRDTDKMSTLVAELTRKEETMKQAAREHQLRRTKGLGASAXXXXXXRATRAEAMEKEAXXAAEKAEAWRRAAAASXXXXXXREKXQREAAHGSVLTAELKLKDQREKQVVRQQQLRRTKMLIIRVCGERDRALIFRAWSRLCLHAASLSAAEGASASATAVARATRAEAMEKEXXXXXXXXXXXXXXXXXXXXXXXARVKTQREAARGSLLTAELHQSKEEMEQVVRQQQLRRMKMLFTRVCRERDRALVVRGWSRLCLHAASLSAAEGASXXXXXXXXXXXAESMEKEAKXXXXXXEIAVAREELQRATARGSVLATELKLKIEDTDQLLREHRLRRMRMLVARLCGDKDRSLLFRGWSRLCIHAASLSAAEGASASATAVARATRAEAMEKEXXXXXXXXXXXXXXXXXXXXXXXXXEKAQREAARGSLLTAELHQSKEEMEQVVRQQQLRRMKMLVIRVCGERDRALVFRGWSRLCLHAASLSAAEGASXXXXXXXXXXXXXXXXXXXXXXXHKDEAPEGSAPADAEAACAREKAQRDIDEVSMLAAELKGKEKITEEMARDHQLRWIKGLITRVCGERERALIFRGWSRLCLHAASLSAAEGASAAATAVARAARAEAMEKEAAAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEETDQLMREQQLRRMKMLIVRVCGERDRALMFRGWSRLCLHAASLSAAEGGSAAATAVARAARAEAMEKEAEAAVEKAESWRRAAAASAEMAEARENALREAARGSLLTAELHQSKEEMEQVARQQQLRRMKMLVRGCHADSERNEPISLGWPYKHCLSMADPKFT---------------------ACRTLPIVPETLAKYIPSLPLAPFH----LFLKITRLCGERDRALVFRGWSRLCLHAASLSAADGASAAATALARAARAEAVEKEADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEGMDSMRRRTRAILMLQRLSSDRNKQRVWRAWRFLCEHTAAACAADAAIASTTAGSFESQPPGGYEDSSSSRMDPNAAFLMADNREQSRRKQLFKTVLHFALRADRQAIARGWARFTAATATITASAAFAEGARKMAMMEAYVVDLQQKAARRGRELDRKTRALAILLRDDWAAAVLEREQETRAARLQLAQAEADLTAQIDRMAGVGEISTGRKAHEGKASGQPVRHAGGKGSADGAEENEREAAAGEAEVFVGGAGSGVGMVALQGEGAHRLRAYVASKGRELRRARLESQQWRARCGAMQRRWGLNNLPNSQGSGD-SSTAKGKRLAGILLDMLDERDRRLSNLYKDLASLSTAGCSDGLRPLNQKEGGRRREARRHAGELLLRQMIAAGDEARTHIYRLSLEVQQLQTALRIVRAPAHVSEQQRECGFGQVHAENDEFHVKSGTGILAEASAAFSPAHLPQLTSLIESACTLSQTAPTMPAHGGGFGYPSAAVDDSVQAAADAHELVLSLRSELSALERHAATLQTNLDRLSDASAATADRTATHAAWTAHTTAKKRGGGKALAMAD----NADDGLAVEGAEMATPPTATTGHS--KNRKXXXXXRRQRAAAILQQTL-GNGRRGAETVMPAS---AVQSEESRAVELTREARQRAQETFVSRR 11846 V N R A+R+ + RV G+R+R L+FR W R+C H SL+AAEG+S + E S E ELK +++ V KI+R G+ D+ +FRGWSRLCLHAASLSAAEGASAAATA RAEAM+KEAE A XXXXXXXXXXXXXXXXXX EKAQR+ + STL +EL + ++A R+HQLRRTK LGA+A R+ RAEAMEKEA AA+K XXXXXX X + ++VVR+ QLRR KMLI RVCGERDRAL+FR WSRLCLHAASLSAAEG SA+ATA ARA RAEAMEKE XXXXXXXXXXXXXXXXXXX L +EL + E+ +R+ QL R+KML TRVC E DRAL+ RGWSRLCLHAASLSAAEG S XXXXXXAE+MEKEA+XXXXXX + RE+ QR ARGS LA++L+LK++DT++ LR+H+LRR++ML++R+CG+ DR+L FRGWSRLC+HAASLSAAEGASA+A AEAMEKE XXXXXXXXXXXXXXXXXXX L +EL ++ E+VVR+ QL R+KML+ RVCGE DRALVFRGWSRLCLHAASLSAAEGAS XXXXXXX R+HQL +K LI RVC ER+RAL+FRGWSRLCLHAASLSAAEGA+AAA AEAMEKEA AA +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + ++T++ +RE QL R+KML RVCGERDRALMFRGWSRLCLHAASLSAAEG SAA AEAMEKEAEAA + WRRA RE A REAARGS+L AEL ++ E+ R +QL R+KML A + K + AD R + E K + + H + + I R+CGE D+AL+FRGWSRLCLHAASLSAA+G +AAAT AEA+EKEA XXXXXXXXXXXXXXXXXXXXXX G + + + ML + RA E AA AD ++ ARG ++A V ++AAR RELD+KTRALAILL+DDWA AVL+RE+ETRA RLQLAQA+ADL Q+D +AG ++ G K KAS + HAGG G EE +RE E EVF+G G+GMVALQGEGA RLRAYVASKGR+L+RAR+ES+QWR RC AMQRR N L +GS +ST +GK+LA ILL+MLDERDRR THI+RLS EVQ+L+TALR P + + +V +G E A+ L + L+E+ T+S GG G+ A++DD VQ+A DAHELV SLRSE+SALERH ATLQ NL R+ DASAAT A +A G P T T +RK RR RAAA+L+Q + GNG G + PA+ AV++EE+R V L RE RQRAQE FVSRR Sbjct: 1782 VDNQKRQLAARV--VARVLGDRNRRLMFRSWGRLCSHFVSLNAAEGSSAAATPAARAVEVDVEGKGSAKAISSI------DAVEEEGFERSNREKELK-RLRAVAKISRAYGDTDKRSLFRGWSRLCLHAASLSAAEGASAAATAXXXXXRAEAMQKEAEXAXEXXXXXXXXXXXXXXXXXXREKAQREAARGSTLASELQLNIQDKEEALRQHQLRRTKMLGAAAAATATARSARAEAMEKEAKAAADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKDTEEVVREHQLRRLKMLIARVCGERDRALVFRGWSRLCLHAASLSAAEGGSAAATAAARAARAEAMEKEAKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASELQLKVKGTEEAMREHQLHRLKMLITRVCGESDRALMFRGWSRLCLHAASLSAAEGVSAAATAXXXXXXAEAMEKEAEXXXXXXXVXXXREKAQREAARGSELASKLQLKVKDTEEALRQHQLRRLKMLISRVCGESDRALKFRGWSRLCLHAASLSAAEGASAAAXXXXXXXXAEAMEKEAKAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASELQLKVKDTEEVVREHQLHRLKMLITRVCGESDRALVFRGWSRLCLHAASLSAAEGASAAATXXXXXXXAEAMEKEAKAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREHQLHRLKMLIARVC-ERDRALMFRGWSRLCLHAASLSAAEGAAAAAXXXXXXXXAEAMEKEAKAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELASELQLKVKDTEEEVREHQLHRLKMLTSRVCGERDRALMFRGWSRLCLHAASLSAAEGASAAXXXXXXXXXAEAMEKEAEAAADXXXXWRRAXXXXXXXXXXRERAQREAARGSVLAAELKLKVKDTEEAVRDRQLHRLKMLGAAAAATXXXXXXXAEAME-KEAKAAADXXXXXXXXXXXXXXXXXXXXXXXRETSRGSELASELQLKVKDTEEVVREHQLRRIKMLIIRVCGESDKALMFRGWSRLCLHAASLSAAEGGAAAATXXXXXXXAEAMEKEAKVAADXXXXXXXXXXXXXXXXXXXXXX------GKMAREHQLHRLKMLGAAAGXXXXXXXXRAEAMEKEAKAA----------------------------------------ADXXXXXXXXXXXXXXXXXXXXXXQREAARGL---------------------ELASELKLKVKDTEEAARHARELDKKTRALAILLQDDWANAVLKREKETRAVRLQLAQADADLGEQLDSIAG---LAVGSKRRARKASVRHSNHAGG-GHVGEHEEEKRETTGHEPEVFLGEGTGGIGMVALQGEGARRLRAYVASKGRDLKRARVESEQWRVRCEAMQRRL-TNVLQGEEGSEPRASTNEGKKLAAILLNMLDERDRR------------------------------------------------------THIHRLSHEVQRLETALRSGGVPHSSGRTEFDVAP----------NVSAGAARHGEEGASRGGFSLREEGVLVETTNTMSPGQ-------GGHGHSIASIDDVVQSATDAHELVRSLRSEVSALERHRATLQANLMRIEDASAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRARRAVATPGLNKQLPSTKTRPDRGRDSRKRSRVERRARAAAVLRQAVHGNG--GEDNEEPATGGGAVEAEEARVVLLAREERQRAQEVFVSRR 3457
BLAST of mRNA_L-elsbetiae_contig1822.5263.1 vs. uniprot
Match: A0A6H5KKN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN4_9PHAE) HSP 1 Score: 379 bits (973), Expect = 2.690e-101 Identity = 625/1625 (38.46%), Postives = 767/1625 (47.20%), Query Frame = 3 Query: 6459 VANCFRSSASRLTKITRVCGERDRALLFRGWSRVCLHAASLSAAEGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEAHRENSRGSMLETELKVKVKDVEK---------------------------------ITRVCGERDRSLMFRGWSRLCLHAASLSAAEGASAAATAVARATRAEAMEKEAEGAAHXXXXXXXXXXXXXXXXXXXEKAQRDTDKMSTLVAELTRKEETMKQAAREHQLRRTKGLGASAXXXXXXRATRAEAMEKEAXXAAEKAEAWRRAAAASXXXXXXREKXQREAAHGSVLTAELKLKDQREKQVVRQQQLRRTKMLIIRVCGERDRALIFRAWSRLCLHAASLSAAEGASASATAVARATRAEAMEKEXXXXXXXXXXXXXXXXXXXXXXXARVKTQREAARGSLLTAELHQSKEEMEQVVRQQQLRRMKMLFTRVCRERDRALVVRGWSRLCLHAASLSAAEGASXXXXXXXXXXXAESMEKEAKXXXXXXEIAVAREELQRATARGSVLATELKLKIEDTDQLLREHRLRRMRMLVARLCGDKDR-------SLLFRGWSRLCIHAASLSAAEGASASATAVARATRAEAMEKEXXXXXXXXXXXXXXXXXXXXXXXXXEKAQREAARGSLLTAELHQSKEEMEQVVRQQQLRRMKMLVIRVCGERDRALVFRGWSRLCLHAASLSAAEGASXXXXXXXXXXXXXXXXXXXXXXXHKDEAPEGSAPADAEAACAREK--------------------------------------------------------------------------------------------AQRDIDEVSMLAAELKGKEKITEEMARDHQLRWIKGL------------------------------------------------------------------ITRVCGERERALIFRGWSRLCLHAASLSAAEGASAAATAVARAARAEAMEKEAAAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEETDQLMREQQLRRMKMLI------VRVCGERDRALMFRGWSRLCLHAASLSAAEGGSAAATAVARAARAEAMEKEAEAAVEKAESWRRAAAASAEMAEARENALREAARGSLLTAELHQSKEEMEQVARQQQLRRMKMLVRGCHADSERNEPISLGWPYKHCLSMADPKFTACRTLPIVPETLAKYIPSLPLAPFHLFLKITRLCGERDRALVFRGWSRLCLHAASLSAADGASAAATALARAARAEAVEKEADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXME-----------GMDSMRRRT-----RAILMLQRLSSDRNKQRVWRAWRFLCEHTAAACAADAAIASTTAGSFESQPPGGYEDSSSSRMDPNAAFLMADNREQSRRKQLFKTVLHFALRADRQAIARGWARFTAATATITASAAFAEGARKMAMMEAYVVDLQQKAARRGRELDRKTRALAILLRDDWAAAVLEREQETRAARLQLAQAEADLTAQIDRMAGVGEISTGRKAHEGKASGQPVRHAGGKGSADGAEENEREAAAGEAEVFVGGAGSGVGMVALQ 10673 V N R A+RL +TRV G R+R L+FR W R+C + SL+A +G+S EE ++R E ELK +++ V K I R CG+ R +FRGWSRLCLHAASLSAAEGASAAA RA RAEAMEKEAE AA XXXXX XXXXXXXXXXXXX + S L +EL + ++A R+HQLRRTK L ++ R+ RAEAMEKEA AA+ XXXXXX X L+LK +VVR+ QLRR KML AL+FR WSRLCLHAASLSAAEGA+A+A XXXXXX R K QREAARGS+ +EL ++ E+ +R+ QL R+KML AASLSAA XXXXXXXXXXX E+MEKEA+XXXXXX RE+ QR ARGS LA++L+LK++DT+++ RE +LR +MLV K + +L+FRGWSRLC+HAASLSAAEGASA+A AEAMEKE XXXXXXXXXXXXXXXXXX RGS L +EL ++ E+V R+ +L R+KMLV RD W+ L + AASLSAAEGAS XXXXXXX + +AEAA AQR+ SM A+EL+ K K TEE R+HQ+R +K L I+RVCGE +RALIFRGWSRLCLHAASLSAAEGASAAA AEAMEKEA AA +XXXXXXXXXXXXXXXXXXXXX + +T++ +R++QL R+KML+ CG L FRGWSRLCLHAASLSAAEG SA KE A RE +R S L +EL ++ ++V R+ QLRR+KML R H EP +L PE + +Y RAL+FRGWSRLCLHAASLSAA+G +AAATA ARAARAEA+EKEA A XXXXXXXXXXXXXXXXXXXXXXXX E MD+ + R +++ R+ ++++ ++R W LC H A+ AA+ A A++T E + + D + + + ++ V D ++ AAR RELD+KTRALAILL+DDWA AVL+RE+ETRA RLQLAQA+ADL Q+DR+AG ++ G K KAS + H GG G EE ++E + E EVF+GG G+GMVALQ Sbjct: 1378 VDNQKRQLAARL--VTRVLGNRNRRLMFRSWGRLCSYFVSLNAVKGSSAAATPAARAVQVDVEEKGAAMAISSIGAVE--EEGFERSNR----EKELK-RLRAVAKVLGCLFRAPHAPNGCLTVGYKLWFFVASLLPSQIARACGDTGRRSLFRGWSRLCLHAASLSAAEGASAAAXXXXRAVRAEAMEKEAE-AAXXXXXXWXXXXXXXXXXXXXXXXXXXXXRGSELASELQLNIQDKEEALRQHQLRRTKMLVRNSRCSTA-RSARAEAMEKEAKAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQLKVNDTVEVVREHQLRRLKML----------ALMFRGWSRLCLHAASLSAAEGAAAAAXXXXXXXXXXXXXXXXXXXXXKAEAWRRAAAASVEVAEIREKAQREAARGSMSASELQLKVKDTEEALRKHQLHRLKML-----------------------AASLSAAXXXXXXXXXXXXXXXXEAMEKEAEXXXXXXXXXXXREKAQREAARGSELASKLQLKVKDTEEVARERQLRLPKMLVRDSLHWKPQGMPGIFEALMFRGWSRLCLHAASLSAAEGASAAAXXXXXXXXAEAMEKEAKAATEKXXXXXXXXXXXXXXXXXXXXXXXXXXRGSELASELQLKVKDTEEVAREHRLHRLKMLV------RDSLR----WTTLRV-AASLSAAEGASAAAXXXXXXXRAE------------------AMQKEAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQREAARGSMSASELQLKVKDTEEELREHQIRRLKMLVRDSLHWITLWHTGYISVDNREWGREVYESHTSYSRHWPGMQASPVFLLPTLTIAAFPSSSLLPIKISRVCGESDRALIFRGWSRLCLHAASLSAAEGASAAAXXXXXXXXAEAMEKEAKAAADXXXXXXXXXXXXXXXXXXXXXVQREAARGSELAAELQLKVNDTEEAVRDRQLHRLKMLVRGNPSGTTACG----VLKFRGWSRLCLHAASLSAAEGASAXXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRETSRSSELASELQPKVKDTDEVVRKHQLRRIKML-RDKHTAG--GEPNTL------------------------PEAMNRY--------------------RVSRALMFRGWSRLCLHAASLSAAEGGAAAATAAARAARAEAMEKEAKAAADXXXXXXXXXXXXXXXXXXXXXXXXGTHEVSALTTALKQKDMDTEKMAREHQLHRLKMLVVRVCHEKDRALIFRGWSRLCLHAASLSAAEGAAAASTXXXXXXXXEA-MEKEAKAAADXXXXWRXXXXXXXXXXXXXXXXXXXXXXXXE-----------------------------LASELQLKVKDTEE-AARHARELDKKTRALAILLQDDWANAVLKREKETRAVRLQLAQADADLGEQLDRIAG---LAVGSKRRARKASVRHSNHGGG-GHVGEHEEEKQEISGHEPEVFLGGGTGGIGMVALQ 2843 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1822.5263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1822.5263.1 >prot_L-elsbetiae_contig1822.5263.1 ID=prot_L-elsbetiae_contig1822.5263.1|Name=mRNA_L-elsbetiae_contig1822.5263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1278bp MDPDVMDPDSLSSPEHGGGTSSTRERGPGFGSMLSFSIQGPADHASSQRSback to top mRNA from alignment at L-elsbetiae_contig1822:1191..21144+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1822.5263.1 ID=mRNA_L-elsbetiae_contig1822.5263.1|Name=mRNA_L-elsbetiae_contig1822.5263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=19954bp|location=Sequence derived from alignment at L-elsbetiae_contig1822:1191..21144+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1822:1191..21144+ >mRNA_L-elsbetiae_contig1822.5263.1 ID=mRNA_L-elsbetiae_contig1822.5263.1|Name=mRNA_L-elsbetiae_contig1822.5263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7668bp|location=Sequence derived from alignment at L-elsbetiae_contig1822:1191..21144+ (Laminarionema elsbetiae ELsaHSoW15)back to top |